mRNA_1332 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129406
Unique NamemRNA_1332
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CL33_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL33_9STRA)

HSP 1 Score: 690 bits (1781), Expect = 1.980e-251
Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 1
Query:    1 CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
            CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF
Sbjct:    1 CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 333          
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835Z646_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z646_9STRA)

HSP 1 Score: 473 bits (1217), Expect = 1.380e-164
Identity = 221/241 (91.70%), Postives = 234/241 (97.10%), Query Frame = 1
Query:  277 QASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
            +ASA KW+YI+GYL +GYDVHLVIEF+SKTPLDDINNGHYDGVLQSFAKAANRYTG KQVYIRPLHELN NWY+W VFYKAPDGSNIPVYL+AYRRVV V+RQSAPGKFLFQQHYN VNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSV+LRSFVQVFNTFYYQMTAIT+RP+GIGE+STTSYCGVDKPAW+REAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF
Sbjct:  132 KASALKWNYIEGYLKKGYDVHLVIEFLSKTPLDDINNGHYDGVLQSFAKAANRYTGGKQVYIRPLHELNGNWYAWTVFYKAPDGSNIPVYLDAYRRVVRVIRQSAPGKFLFQQHYNAVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVVLRSFVQVFNTFYYQMTAITSRPIGIGELSTTSYCGVDKPAWVREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 372          
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CA92_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA92_9STRA)

HSP 1 Score: 408 bits (1048), Expect = 1.230e-141
Identity = 195/215 (90.70%), Postives = 204/215 (94.88%), Query Frame = 1
Query:  355 MSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
            MSK PLDDINNG YD VL+SFAKAANRYTG KQVYIRPLHELN NWY+W VFYKAP+GSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSV NACGTSSVILRSF QV NTF YQMTAITNRPMGIGEISTTSYCGVDKPAWIR+AW QLAIKYT+VTAVDFFL+NKPFGKT+K+WD+NTPADVSAF
Sbjct:    1 MSKKPLDDINNGDYDDVLKSFAKAANRYTGGKQVYIRPLHELNGNWYAWTVFYKAPNGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVDNACGTSSVILRSFEQVLNTFCYQMTAITNRPMGIGEISTTSYCGVDKPAWIRDAWQQLAIKYTEVTAVDFFLDNKPFGKTVKDWDMNTPADVSAF 215          
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835Z3C0_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C0_9STRA)

HSP 1 Score: 376 bits (966), Expect = 7.600e-125
Identity = 179/334 (53.59%), Postives = 235/334 (70.36%), Query Frame = 1
Query:    1 CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVIL-RSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
            C  F   T   VL +CC   I  SKKSC+ N++PC++   K +P  + +  G    R V++GL+   L +QLA RA++YG +F   L++LP    A KW  +Q YLD  YDVHLVIEF +  PL DI  G +D VL +FA AAN YTG ++VYIRPLHE NSNWY W ++       NIP YL AYRR+V ++R +APGKFLFQQH+NPVN+G D+Y  L+++YAGD YVD V VS+YN CGTSS +  ++   +FN FYYQMTAIT+RP+ +GE+STT YCG+DKPAW+ ++W QLA KYT+V A+D+FL NKP+G  +K WD+NTPA+V AF
Sbjct:  165 CKNFEAGTQDIVLDKCCVERIIASKKSCDTNASPCIMAANK-YP--ESSGGGEHVQRNVSVGLYTTQLPSQLAIRAVSYGERFDTALMYLPATLDALKWRNVQLYLDLQYDVHLVIEFYADDPLRDILAGKFDNVLVAFASAANTYTGSQKVYIRPLHESNSNWYGWSIWRNTASNVNIPDYLAAYRRIVELVRNAAPGKFLFQQHFNPVNFGNDEYVTLRELYAGDGYVDQVGVSLYNTCGTSSWLYPKTITDIFNRFYYQMTAITSRPISVGEMSTTDYCGIDKPAWVLDSWLQLATKYTRVYAIDWFLVNKPYGNVIKTWDMNTPAEVQAF 495          
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CBG2_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG2_9STRA)

HSP 1 Score: 228 bits (581), Expect = 5.340e-67
Identity = 134/323 (41.49%), Postives = 193/323 (59.75%), Query Frame = 1
Query:   43 RCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQ-DLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTP-LDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYF-PLKQMYAGDDYVDMVTVSVYNACGTSSVIL-RSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
            +CCG+ I +S + C+   APC++N   RF P +       P R   +G+    DLD  L  R   YG KF +V+L+  +  +   WDY+   LD+G DV LV+EFM   P L DI NG +D  ++ F KAA    GR+ +Y+RPLHELNS WY+WGVF     G+++  + NA++R+VS  R S    F +Q  +   N  +DK   P +  Y GD+YVD V VS YN+CGT +    +S  ++ NTFY+QM AIT R M I E+S+T++CG  K  WI++ W  LA  Y K+ +V++F E+K      K+WDL++P ++SAF
Sbjct:  176 KCCGAAIAQSDRPCDRYGAPCILNAA-RFDPKNPGN----PVRNARVGVWLSGDLDTVLPQREDKYGIKFDSVVLYQTMDTAG--WDYVASVLDKGVDVELVMEFMDNYPNLRDIANGKFDSKMRDFGKAA-AADGRR-IYLRPLHELNSAWYNWGVF---RPGNSVSDFRNAFKRIVSTFR-STGANFKYQMSFAAKN--SDKETTPFEDFYVGDEYVDQVCVSAYNSCGTGTYRENKSLPEIINTFYWQMQAITKRTMCIAEMSSTNHCG-GKATWIKDTWATLARDYPKIVSVNWFFEDKM--NVGKDWDLHSPDEISAF 480          
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CA54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA54_9STRA)

HSP 1 Score: 207 bits (526), Expect = 7.990e-62
Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = 1
Query:  604 LFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
            L  +H+NPVNYG   Y PL  MYAGDD+VDMVTVS YNACGTSSV+LR+F QV N +YYQM  ITNRP+GIGEI TTSYCGVDKPAW+++AW QLA+KYT VT++D+F+ENKPFG T K+WD N+ AD SAF
Sbjct:  111 LSDEHFNPVNYGNTVYVPLVSMYAGDDFVDMVTVSTYNACGTSSVVLRTFTQVLNVWYYQMLDITNRPIGIGEIGTTSYCGVDKPAWLKDAWKQLALKYTSVTSIDWFMENKPFGHTTKDWDTNSNADTSAF 242          
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835Z8N1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N1_9STRA)

HSP 1 Score: 204 bits (519), Expect = 5.380e-59
Identity = 129/334 (38.62%), Postives = 176/334 (52.69%), Query Frame = 1
Query:    1 CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNI-PVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
            C G   +T       CC   IR + KSC   +APCV+      P            R   +G+  Q     L  R   YG K  ++L+F  V    F W  +   ++RG+ V LV+EF   T L DI  G  DGVL  FA  A   T  +Q YIRPLHE N +WY WG++      +++   +  AY+ +V++ R +A     FQQ YN  N   DK  P K  Y GDDYVDMV  S+YN  G  +    +F ++   FY QMT  T++ + I E+STTSY GVDKPAWI++ W  +A ++T++T V++FLENKP G    NWDLN   +  A+
Sbjct:   74 CGGTGCNTFTGGSSNCCAGPIRTANKSCTQYAAPCVMGATSGTPKPTT--------RKTMVGV--QPGGTPLGTREGQYGVKVDSLLMFQKVTDLHFDW--VATEMNRGHTVQLVLEFFG-TSLKDIAAGGSDGVLSDFANKAK--TDGRQFYIRPLHEFNGDWYPWGIYVDGTLHTDLLSDFKAAYKHIVTIFR-NAKAPVQFQQGYNNSNPRDDK-TPFKNFYVGDDYVDMVCFSLYNFAGIPNHSSGTFTKLAGDFYNQMTLATSKDLCISEMSTTSY-GVDKPAWIKDTWSSIANQFTRITTVNWFLENKPDG----NWDLNNGPEQQAW 385          
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835Z777_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z777_9STRA)

HSP 1 Score: 191 bits (485), Expect = 5.790e-51
Identity = 120/312 (38.46%), Postives = 168/312 (53.85%), Query Frame = 1
Query:   46 CCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTP-LDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVIL-RSFVQVFNTFYYQMTAIT-NRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDL 972
            CCG+MI  S + C    APC ++ Q +F  A  ++K     R   +G       + L  +    G K   V+++LPV     KW  +   LD    V LV+EF    P L D+ +G YD  L+ F K A +  GR Q+ IRPLHELN +WY+W       +G+N   +  A++ VV+ +R S  G F FQ  Y   N  A+   P K  Y GD YVD + VS YN CGT +    +SF ++ NT+Y+Q+TA   ++ + I E+STT  CG DK  WI +AWH LA  Y K T+V++F E+K  G   K+W L
Sbjct:  308 CCGAMIADSGRPCGLFPAPCYLD-QTKFQNAPGSSK-----RTANVGAWFAGGPDALPQQEQNLGVKLDTVMMYLPVGPDL-KWSAVSDILDTKRQVQLVMEFYDSYPNLRDVKSGKYDQYLKDFGKDA-KADGR-QLTIRPLHELNGDWYNWDAL---RNGNNAEDFPGAFQHVVTTLR-STGGNFKFQISYAAKN-SAESNMPFKDFYPGDSYVDQICVSAYNTCGTGTYKSNKSFSEIINTWYFQVTAFAPSKSLCIAEMSTTDQCGSDKAQWITDAWHSLADDYPKFTSVNWFFESKKLGSAYKDWAL 605          
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CCT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT0_9STRA)

HSP 1 Score: 183 bits (464), Expect = 6.660e-48
Identity = 115/320 (35.94%), Postives = 172/320 (53.75%), Query Frame = 1
Query:   46 CCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFM-SKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAIT-NRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
            CC  +I     SC+    PC+VN  K       A +     R  ++ + +   ++ L  R   Y   F  +L++LPVQ   +KW  I G+LD G +V LVIEF+ S + L D+  G YD  L  F +AA      + + IRPLHE N +WY WG   +   G+++  +L A++ VV+ +R +    F +QQ Y   N   D   PL + Y GDDYVD V VS YN CG S    +    ++ +FYYQ+ +    +   I E+S+T +C   KP W+ + W  LA ++T+VT +++FLENK      ++WDLN+ ADV A+
Sbjct:  974 CCPQVIAAEALSCDIAGPPCLVNTDKPIVIDPTAVR-----RKTSVQVLSGS-ESSLEDREGHYHMTFDGILVYLPVQNLNWKW--IVGFLDAGRNVDLVIEFVDSYSNLADVAAGKYDRFLGKFGQAA--ADDGRVINIRPLHEFNGDWYPWGALRQ---GNSMQDFLLAFKHVVTTLRATG-ANFKYQQSYAMKNANNDP-TPLSEWYVGDDYVDQVCVSAYNLCGVSYPTNKPLASMYGSFYYQVLSFAPTKTQCIAEMSSTGHCE-GKPQWLLDTWRSLAYQFTRVTVINWFLENK-IDSLNRDWDLNSKADVEAW 1276          
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835ZA06_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA06_9STRA)

HSP 1 Score: 169 bits (428), Expect = 6.440e-47
Identity = 102/249 (40.96%), Postives = 142/249 (57.03%), Query Frame = 1
Query:  262 LFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSK-TPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSN-IPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTL-KNWDLNTPADVSAF 999
            ++LPV  +  KW Y+   +D    V LVIEF+ +   L  I +G YD  L++F K A +  GR Q+Y+R LHE+N +WY+W  F+    G N +  + NAY+  V+V+R S      FQ  Y   N  + K  P K  Y GD+YVD V  S YN CG +    +S   VF  FY ++   T RP+ I E+S+T  C   KPAWI   W  LA K+T+V+ +++F ENK   K L ++WDLNT AD+ AF
Sbjct:    1 MYLPV--TDLKWSYVASKIDAYGKVQLVIEFIDQGANLKKIASGAYDSKLRAFGKDAAK-DGR-QIYVRMLHEMNGDWYNWCAFF----GDNTVGDFKNAYKHAVTVLR-STGANIKFQMSY-AANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKSLEDVFGDFYTEVQTFTKRPICIAEMSSTGICK-GKPAWISATWKSLATKFTRVSTINWFFENK---KNLGRDWDLNTKADIHAF 235          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CL33_9STRA1.980e-251100.00Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835Z646_9STRA1.380e-16491.70Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CA92_9STRA1.230e-14190.70Glycoside hydrolase superfamily (Fragment) n=1 Tax... [more]
A0A835Z3C0_9STRA7.600e-12553.59Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CBG2_9STRA5.340e-6741.49Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A836CA54_9STRA7.990e-6270.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z8N1_9STRA5.380e-5938.62Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]
A0A835Z777_9STRA5.790e-5138.46GH26 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CCT0_9STRA6.660e-4835.94Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA06_9STRA6.440e-4740.96Glycoside hydrolase superfamily n=1 Tax=Tribonema ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:726168..727166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129406|gw1.18.10.1
DescriptionBelongs to the glycosyl hydrolase 26 family
COG categoryG
Max annot lvl2|Bacteria
EggNOG OGsCOG4124@1|root,COG4124@2|Bacteria
Evalue1.71e-31
Seed ortholog1123400.KB904752_gene841
Hectar predicted targeting categorymitochondrion
TranscriptId129728
TrackFilteredModels1
ProteinId129406
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129406gene_1332Tribonema minus UTEX_B_3156 geneContig_18 726168..727166 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1332_1exon_1332_1Tribonema minus UTEX_B_3156 exonContig_18 726168..727166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1332CDS_1332Tribonema minus UTEX_B_3156 CDSContig_18 726168..727166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129406Trimin1|129406|gw1.18.10.1Tribonema minus UTEX_B_3156 polypeptideContig_18 726168..727166 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1332 ID=mRNA_1332|Name=jgi.p|Trimin1|129406|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_18:726168..727166+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCAATGGGTTCTCACGCTCAACAAGTGCGAATGTGTTAAGGCGGTGCTG
TGGCAGCATGATCAGAAAATCGAAGAAATCCTGCGAGCATAATAGTGCGC
CATGTGTGGTGAACGTACAGAAGCGCTTCCCGCCTGCAGATGTCGCAACG
AAAGGTGCTGAACCATGTAGGCCTGTAGCAATCGGTTTGCATGCTCAAGA
TCTTGATAATCAGCTAGCACCTCGCGCGATTGCGTATGGCTCTAAATTCA
CTGCAGTATTGCTGTTCCTACCTGTGCAGGCTTCAGCCTTTAAGTGGGAC
TATATTCAAGGTTACCTAGATAGAGGATATGACGTGCACCTTGTGATTGA
GTTCATGTCGAAGACCCCCCTTGATGACATCAATAACGGCCATTATGACG
GCGTGCTACAGTCCTTTGCAAAAGCCGCAAACAGGTACACAGGCCGCAAG
CAGGTGTACATTCGGCCCCTCCACGAACTGAACTCCAACTGGTACAGCTG
GGGGGTATTTTACAAGGCACCTGATGGGAGCAACATTCCCGTGTACCTCA
ACGCCTACCGTCGGGTGGTGAGTGTCATGCGGCAGAGCGCACCAGGCAAG
TTTTTGTTTCAGCAGCACTACAACCCTGTGAACTACGGCGCTGACAAGTA
CTTTCCGCTTAAGCAGATGTATGCAGGTGATGACTATGTAGACATGGTGA
CAGTGTCGGTATATAACGCCTGCGGCACAAGCTCAGTAATACTGCGCTCA
TTCGTGCAGGTCTTCAACACGTTTTATTATCAAATGACTGCTATTACAAA
TCGACCCATGGGAATTGGTGAGATAAGCACAACCAGTTACTGCGGCGTTG
ACAAGCCTGCGTGGATCCGTGAAGCATGGCATCAATTGGCTATTAAGTAC
ACCAAGGTGACTGCTGTCGACTTCTTTCTTGAGAACAAGCCCTTTGGTAA
GACTTTGAAAAACTGGGACCTCAACACTCCGGCAGATGTGTCTGCCTTC
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protein sequence of jgi.p|Trimin1|129406

>Trimin1|129406|gw1.18.10.1 ID=Trimin1|129406|gw1.18.10.1|Name=jgi.p|Trimin1|129406|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=333bp
CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVAT
KGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWD
YIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRK
QVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGK
FLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRS
FVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKY
TKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF
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mRNA from alignment at Contig_18:726168..727166+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1332 ID=mRNA_1332|Name=jgi.p|Trimin1|129406|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_18:726168..727166+ (Tribonema minus UTEX_B_3156 )
TGCAATGGGTTCTCACGCTCAACAAGTGCGAATGTGTTAAGGCGGTGCTG TGGCAGCATGATCAGAAAATCGAAGAAATCCTGCGAGCATAATAGTGCGC CATGTGTGGTGAACGTACAGAAGCGCTTCCCGCCTGCAGATGTCGCAACG AAAGGTGCTGAACCATGTAGGCCTGTAGCAATCGGTTTGCATGCTCAAGA TCTTGATAATCAGCTAGCACCTCGCGCGATTGCGTATGGCTCTAAATTCA CTGCAGTATTGCTGTTCCTACCTGTGCAGGCTTCAGCCTTTAAGTGGGAC TATATTCAAGGTTACCTAGATAGAGGATATGACGTGCACCTTGTGATTGA GTTCATGTCGAAGACCCCCCTTGATGACATCAATAACGGCCATTATGACG GCGTGCTACAGTCCTTTGCAAAAGCCGCAAACAGGTACACAGGCCGCAAG CAGGTGTACATTCGGCCCCTCCACGAACTGAACTCCAACTGGTACAGCTG GGGGGTATTTTACAAGGCACCTGATGGGAGCAACATTCCCGTGTACCTCA ACGCCTACCGTCGGGTGGTGAGTGTCATGCGGCAGAGCGCACCAGGCAAG TTTTTGTTTCAGCAGCACTACAACCCTGTGAACTACGGCGCTGACAAGTA CTTTCCGCTTAAGCAGATGTATGCAGGTGATGACTATGTAGACATGGTGA CAGTGTCGGTATATAACGCCTGCGGCACAAGCTCAGTAATACTGCGCTCA TTCGTGCAGGTCTTCAACACGTTTTATTATCAAATGACTGCTATTACAAA TCGACCCATGGGAATTGGTGAGATAAGCACAACCAGTTACTGCGGCGTTG ACAAGCCTGCGTGGATCCGTGAAGCATGGCATCAATTGGCTATTAAGTAC ACCAAGGTGACTGCTGTCGACTTCTTTCTTGAGAACAAGCCCTTTGGTAA GACTTTGAAAAACTGGGACCTCAACACTCCGGCAGATGTGTCTGCCTTC
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Coding sequence (CDS) from alignment at Contig_18:726168..727166+

>mRNA_1332 ID=mRNA_1332|Name=jgi.p|Trimin1|129406|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=999bp|location=Sequence derived from alignment at Contig_18:726168..727166+ (Tribonema minus UTEX_B_3156 )
TGCAATGGGTTCTCACGCTCAACAAGTGCGAATGTGTTAAGGCGGTGCTG
TGGCAGCATGATCAGAAAATCGAAGAAATCCTGCGAGCATAATAGTGCGC
CATGTGTGGTGAACGTACAGAAGCGCTTCCCGCCTGCAGATGTCGCAACG
AAAGGTGCTGAACCATGTAGGCCTGTAGCAATCGGTTTGCATGCTCAAGA
TCTTGATAATCAGCTAGCACCTCGCGCGATTGCGTATGGCTCTAAATTCA
CTGCAGTATTGCTGTTCCTACCTGTGCAGGCTTCAGCCTTTAAGTGGGAC
TATATTCAAGGTTACCTAGATAGAGGATATGACGTGCACCTTGTGATTGA
GTTCATGTCGAAGACCCCCCTTGATGACATCAATAACGGCCATTATGACG
GCGTGCTACAGTCCTTTGCAAAAGCCGCAAACAGGTACACAGGCCGCAAG
CAGGTGTACATTCGGCCCCTCCACGAACTGAACTCCAACTGGTACAGCTG
GGGGGTATTTTACAAGGCACCTGATGGGAGCAACATTCCCGTGTACCTCA
ACGCCTACCGTCGGGTGGTGAGTGTCATGCGGCAGAGCGCACCAGGCAAG
TTTTTGTTTCAGCAGCACTACAACCCTGTGAACTACGGCGCTGACAAGTA
CTTTCCGCTTAAGCAGATGTATGCAGGTGATGACTATGTAGACATGGTGA
CAGTGTCGGTATATAACGCCTGCGGCACAAGCTCAGTAATACTGCGCTCA
TTCGTGCAGGTCTTCAACACGTTTTATTATCAAATGACTGCTATTACAAA
TCGACCCATGGGAATTGGTGAGATAAGCACAACCAGTTACTGCGGCGTTG
ACAAGCCTGCGTGGATCCGTGAAGCATGGCATCAATTGGCTATTAAGTAC
ACCAAGGTGACTGCTGTCGACTTCTTTCTTGAGAACAAGCCCTTTGGTAA
GACTTTGAAAAACTGGGACCTCAACACTCCGGCAGATGTGTCTGCCTTC
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