mRNA_1332 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CL33_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL33_9STRA) HSP 1 Score: 690 bits (1781), Expect = 1.980e-251 Identity = 333/333 (100.00%), Postives = 333/333 (100.00%), Query Frame = 1
Query: 1 CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF
Sbjct: 1 CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 333
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835Z646_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z646_9STRA) HSP 1 Score: 473 bits (1217), Expect = 1.380e-164 Identity = 221/241 (91.70%), Postives = 234/241 (97.10%), Query Frame = 1
Query: 277 QASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
+ASA KW+YI+GYL +GYDVHLVIEF+SKTPLDDINNGHYDGVLQSFAKAANRYTG KQVYIRPLHELN NWY+W VFYKAPDGSNIPVYL+AYRRVV V+RQSAPGKFLFQQHYN VNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSV+LRSFVQVFNTFYYQMTAIT+RP+GIGE+STTSYCGVDKPAW+REAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF
Sbjct: 132 KASALKWNYIEGYLKKGYDVHLVIEFLSKTPLDDINNGHYDGVLQSFAKAANRYTGGKQVYIRPLHELNGNWYAWTVFYKAPDGSNIPVYLDAYRRVVRVIRQSAPGKFLFQQHYNAVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVVLRSFVQVFNTFYYQMTAITSRPIGIGELSTTSYCGVDKPAWVREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 372
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CA92_9STRA (Glycoside hydrolase superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA92_9STRA) HSP 1 Score: 408 bits (1048), Expect = 1.230e-141 Identity = 195/215 (90.70%), Postives = 204/215 (94.88%), Query Frame = 1
Query: 355 MSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
MSK PLDDINNG YD VL+SFAKAANRYTG KQVYIRPLHELN NWY+W VFYKAP+GSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSV NACGTSSVILRSF QV NTF YQMTAITNRPMGIGEISTTSYCGVDKPAWIR+AW QLAIKYT+VTAVDFFL+NKPFGKT+K+WD+NTPADVSAF
Sbjct: 1 MSKKPLDDINNGDYDDVLKSFAKAANRYTGGKQVYIRPLHELNGNWYAWTVFYKAPNGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVDNACGTSSVILRSFEQVLNTFCYQMTAITNRPMGIGEISTTSYCGVDKPAWIRDAWQQLAIKYTEVTAVDFFLDNKPFGKTVKDWDMNTPADVSAF 215
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835Z3C0_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C0_9STRA) HSP 1 Score: 376 bits (966), Expect = 7.600e-125 Identity = 179/334 (53.59%), Postives = 235/334 (70.36%), Query Frame = 1
Query: 1 CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVIL-RSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
C F T VL +CC I SKKSC+ N++PC++ K +P + + G R V++GL+ L +QLA RA++YG +F L++LP A KW +Q YLD YDVHLVIEF + PL DI G +D VL +FA AAN YTG ++VYIRPLHE NSNWY W ++ NIP YL AYRR+V ++R +APGKFLFQQH+NPVN+G D+Y L+++YAGD YVD V VS+YN CGTSS + ++ +FN FYYQMTAIT+RP+ +GE+STT YCG+DKPAW+ ++W QLA KYT+V A+D+FL NKP+G +K WD+NTPA+V AF
Sbjct: 165 CKNFEAGTQDIVLDKCCVERIIASKKSCDTNASPCIMAANK-YP--ESSGGGEHVQRNVSVGLYTTQLPSQLAIRAVSYGERFDTALMYLPATLDALKWRNVQLYLDLQYDVHLVIEFYADDPLRDILAGKFDNVLVAFASAANTYTGSQKVYIRPLHESNSNWYGWSIWRNTASNVNIPDYLAAYRRIVELVRNAAPGKFLFQQHFNPVNFGNDEYVTLRELYAGDGYVDQVGVSLYNTCGTSSWLYPKTITDIFNRFYYQMTAITSRPISVGEMSTTDYCGIDKPAWVLDSWLQLATKYTRVYAIDWFLVNKPYGNVIKTWDMNTPAEVQAF 495
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CBG2_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBG2_9STRA) HSP 1 Score: 228 bits (581), Expect = 5.340e-67 Identity = 134/323 (41.49%), Postives = 193/323 (59.75%), Query Frame = 1
Query: 43 RCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQ-DLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTP-LDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYF-PLKQMYAGDDYVDMVTVSVYNACGTSSVIL-RSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
+CCG+ I +S + C+ APC++N RF P + P R +G+ DLD L R YG KF +V+L+ + + WDY+ LD+G DV LV+EFM P L DI NG +D ++ F KAA GR+ +Y+RPLHELNS WY+WGVF G+++ + NA++R+VS R S F +Q + N +DK P + Y GD+YVD V VS YN+CGT + +S ++ NTFY+QM AIT R M I E+S+T++CG K WI++ W LA Y K+ +V++F E+K K+WDL++P ++SAF
Sbjct: 176 KCCGAAIAQSDRPCDRYGAPCILNAA-RFDPKNPGN----PVRNARVGVWLSGDLDTVLPQREDKYGIKFDSVVLYQTMDTAG--WDYVASVLDKGVDVELVMEFMDNYPNLRDIANGKFDSKMRDFGKAA-AADGRR-IYLRPLHELNSAWYNWGVF---RPGNSVSDFRNAFKRIVSTFR-STGANFKYQMSFAAKN--SDKETTPFEDFYVGDEYVDQVCVSAYNSCGTGTYRENKSLPEIINTFYWQMQAITKRTMCIAEMSSTNHCG-GKATWIKDTWATLARDYPKIVSVNWFFEDKM--NVGKDWDLHSPDEISAF 480
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CA54_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA54_9STRA) HSP 1 Score: 207 bits (526), Expect = 7.990e-62 Identity = 93/132 (70.45%), Postives = 110/132 (83.33%), Query Frame = 1
Query: 604 LFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
L +H+NPVNYG Y PL MYAGDD+VDMVTVS YNACGTSSV+LR+F QV N +YYQM ITNRP+GIGEI TTSYCGVDKPAW+++AW QLA+KYT VT++D+F+ENKPFG T K+WD N+ AD SAF
Sbjct: 111 LSDEHFNPVNYGNTVYVPLVSMYAGDDFVDMVTVSTYNACGTSSVVLRTFTQVLNVWYYQMLDITNRPIGIGEIGTTSYCGVDKPAWLKDAWKQLALKYTSVTSIDWFMENKPFGHTTKDWDTNSNADTSAF 242
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835Z8N1_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N1_9STRA) HSP 1 Score: 204 bits (519), Expect = 5.380e-59 Identity = 129/334 (38.62%), Postives = 176/334 (52.69%), Query Frame = 1
Query: 1 CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNI-PVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
C G +T CC IR + KSC +APCV+ P R +G+ Q L R YG K ++L+F V F W + ++RG+ V LV+EF T L DI G DGVL FA A T +Q YIRPLHE N +WY WG++ +++ + AY+ +V++ R +A FQQ YN N DK P K Y GDDYVDMV S+YN G + +F ++ FY QMT T++ + I E+STTSY GVDKPAWI++ W +A ++T++T V++FLENKP G NWDLN + A+
Sbjct: 74 CGGTGCNTFTGGSSNCCAGPIRTANKSCTQYAAPCVMGATSGTPKPTT--------RKTMVGV--QPGGTPLGTREGQYGVKVDSLLMFQKVTDLHFDW--VATEMNRGHTVQLVLEFFG-TSLKDIAAGGSDGVLSDFANKAK--TDGRQFYIRPLHEFNGDWYPWGIYVDGTLHTDLLSDFKAAYKHIVTIFR-NAKAPVQFQQGYNNSNPRDDK-TPFKNFYVGDDYVDMVCFSLYNFAGIPNHSSGTFTKLAGDFYNQMTLATSKDLCISEMSTTSY-GVDKPAWIKDTWSSIANQFTRITTVNWFLENKPDG----NWDLNNGPEQQAW 385
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835Z777_9STRA (GH26 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z777_9STRA) HSP 1 Score: 191 bits (485), Expect = 5.790e-51 Identity = 120/312 (38.46%), Postives = 168/312 (53.85%), Query Frame = 1
Query: 46 CCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSKTP-LDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVIL-RSFVQVFNTFYYQMTAIT-NRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDL 972
CCG+MI S + C APC ++ Q +F A ++K R +G + L + G K V+++LPV KW + LD V LV+EF P L D+ +G YD L+ F K A + GR Q+ IRPLHELN +WY+W +G+N + A++ VV+ +R S G F FQ Y N A+ P K Y GD YVD + VS YN CGT + +SF ++ NT+Y+Q+TA ++ + I E+STT CG DK WI +AWH LA Y K T+V++F E+K G K+W L
Sbjct: 308 CCGAMIADSGRPCGLFPAPCYLD-QTKFQNAPGSSK-----RTANVGAWFAGGPDALPQQEQNLGVKLDTVMMYLPVGPDL-KWSAVSDILDTKRQVQLVMEFYDSYPNLRDVKSGKYDQYLKDFGKDA-KADGR-QLTIRPLHELNGDWYNWDAL---RNGNNAEDFPGAFQHVVTTLR-STGGNFKFQISYAAKN-SAESNMPFKDFYPGDSYVDQICVSAYNTCGTGTYKSNKSFSEIINTWYFQVTAFAPSKSLCIAEMSTTDQCGSDKAQWITDAWHSLADDYPKFTSVNWFFESKKLGSAYKDWAL 605
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A836CCT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCT0_9STRA) HSP 1 Score: 183 bits (464), Expect = 6.660e-48 Identity = 115/320 (35.94%), Postives = 172/320 (53.75%), Query Frame = 1
Query: 46 CCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATKGAEPCRPVAIGLHAQDLDNQLAPRAIAYGSKFTAVLLFLPVQASAFKWDYIQGYLDRGYDVHLVIEFM-SKTPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSNIPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAIT-NRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTLKNWDLNTPADVSAF 999
CC +I SC+ PC+VN K A + R ++ + + ++ L R Y F +L++LPVQ +KW I G+LD G +V LVIEF+ S + L D+ G YD L F +AA + + IRPLHE N +WY WG + G+++ +L A++ VV+ +R + F +QQ Y N D PL + Y GDDYVD V VS YN CG S + ++ +FYYQ+ + + I E+S+T +C KP W+ + W LA ++T+VT +++FLENK ++WDLN+ ADV A+
Sbjct: 974 CCPQVIAAEALSCDIAGPPCLVNTDKPIVIDPTAVR-----RKTSVQVLSGS-ESSLEDREGHYHMTFDGILVYLPVQNLNWKW--IVGFLDAGRNVDLVIEFVDSYSNLADVAAGKYDRFLGKFGQAA--ADDGRVINIRPLHEFNGDWYPWGALRQ---GNSMQDFLLAFKHVVTTLRATG-ANFKYQQSYAMKNANNDP-TPLSEWYVGDDYVDQVCVSAYNLCGVSYPTNKPLASMYGSFYYQVLSFAPTKTQCIAEMSSTGHCE-GKPQWLLDTWRSLAYQFTRVTVINWFLENK-IDSLNRDWDLNSKADVEAW 1276
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Match: A0A835ZA06_9STRA (Glycoside hydrolase superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA06_9STRA) HSP 1 Score: 169 bits (428), Expect = 6.440e-47 Identity = 102/249 (40.96%), Postives = 142/249 (57.03%), Query Frame = 1
Query: 262 LFLPVQASAFKWDYIQGYLDRGYDVHLVIEFMSK-TPLDDINNGHYDGVLQSFAKAANRYTGRKQVYIRPLHELNSNWYSWGVFYKAPDGSN-IPVYLNAYRRVVSVMRQSAPGKFLFQQHYNPVNYGADKYFPLKQMYAGDDYVDMVTVSVYNACGTSSVILRSFVQVFNTFYYQMTAITNRPMGIGEISTTSYCGVDKPAWIREAWHQLAIKYTKVTAVDFFLENKPFGKTL-KNWDLNTPADVSAF 999
++LPV + KW Y+ +D V LVIEF+ + L I +G YD L++F K A + GR Q+Y+R LHE+N +WY+W F+ G N + + NAY+ V+V+R S FQ Y N + K P K Y GD+YVD V S YN CG + +S VF FY ++ T RP+ I E+S+T C KPAWI W LA K+T+V+ +++F ENK K L ++WDLNT AD+ AF
Sbjct: 1 MYLPV--TDLKWSYVASKIDAYGKVQLVIEFIDQGANLKKIASGAYDSKLRAFGKDAAK-DGR-QIYVRMLHEMNGDWYNWCAFF----GDNTVGDFKNAYKHAVTVLR-STGANIKFQMSY-AANNASKKKTPFKDFYVGDEYVDQVCTSAYNQCGATYPKNKSLEDVFGDFYTEVQTFTKRPICIAEMSSTGICK-GKPAWISATWKSLATKFTRVSTINWFFENK---KNLGRDWDLNTKADIHAF 235 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129406 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1332 ID=mRNA_1332|Name=jgi.p|Trimin1|129406|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_18:726168..727166+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TGCAATGGGTTCTCACGCTCAACAAGTGCGAATGTGTTAAGGCGGTGCTGback to top protein sequence of jgi.p|Trimin1|129406 >Trimin1|129406|gw1.18.10.1 ID=Trimin1|129406|gw1.18.10.1|Name=jgi.p|Trimin1|129406|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=333bp CNGFSRSTSANVLRRCCGSMIRKSKKSCEHNSAPCVVNVQKRFPPADVATback to top mRNA from alignment at Contig_18:726168..727166+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1332 ID=mRNA_1332|Name=jgi.p|Trimin1|129406|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=999bp|location=Sequence derived from alignment at Contig_18:726168..727166+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:726168..727166+ >mRNA_1332 ID=mRNA_1332|Name=jgi.p|Trimin1|129406|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=999bp|location=Sequence derived from alignment at Contig_18:726168..727166+ (Tribonema minus UTEX_B_3156 )back to top |