mRNA_1330 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A836CJ24_9STRA (GIY-YIG domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ24_9STRA) HSP 1 Score: 164 bits (414), Expect = 1.500e-51 Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query: 1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP
Sbjct: 1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 73
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A836CN45_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN45_9STRA) HSP 1 Score: 146 bits (368), Expect = 3.260e-43 Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 1
Query: 1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
MSHYCYALCN+SGRTY+GYTVCP+RR+RQHNS IKGGAKATRGRGPWRFIYVV+ I+++AS+ALSLEWHIKHP
Sbjct: 1 MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHP 73
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A836CIF4_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF4_9STRA) HSP 1 Score: 101 bits (252), Expect = 7.410e-26 Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1
Query: 1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
M+H+CY + NE GRTYVGYTV P RR+RQHN I GGA++T G+GPWRF +V+ + + LS EWH+K P
Sbjct: 1 MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRP 73
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A835ZCR8_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR8_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 7.010e-25 Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query: 13 CYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
CY + NE GRTYVGYTV P RR+RQHN +KGGA+ T G+GPWR++ V+ + ALS EWH+KHP
Sbjct: 2 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 70
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A6C0CV58_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CV58_9ZZZZ) HSP 1 Score: 84.0 bits (206), Expect = 5.210e-19 Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1
Query: 1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVV-----DCIDYSASDALSLEWHIKHP 219
M +YCY + N + RTY GYTV RR++QHN I+GGAKATRGRGPW F+ ++ DCI S A+ EW IK+P
Sbjct: 1 MVYYCYVIGNANDRTYNGYTVNLTRRLKQHNGVIQGGAKATRGRGPWEFVLILTSECWDCI----SVAMQHEWSIKYP 74
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A6C0F1Y7_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F1Y7_9ZZZZ) HSP 1 Score: 81.6 bits (200), Expect = 7.960e-18 Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1
Query: 7 HYCYALCNES------GRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
+YCY L GRTY GYTV R+RQHN +IKGGA AT+ +GPW FI V+ C+D+++ A+ +EW I++P
Sbjct: 34 YYCYILGQTRHVRTGVGRTYNGYTVDLTHRLRQHNGEIKGGAFATKNKGPWEFIAVMTCLDWTSVRAMQVEWLIRYP 110
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A3G4ZPN0_9VIRU (GIY-YIG nuclease n=1 Tax=Terrestrivirus sp. TaxID=2487775 RepID=A0A3G4ZPN0_9VIRU) HSP 1 Score: 76.3 bits (186), Expect = 4.830e-16 Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1
Query: 1 MSHYCYALCNES----GRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
MS+YCY L + + TYVG TV P RR+RQHN ++ GGAKAT+ R P+ ++ + DALS EWHIKHP
Sbjct: 1 MSYYCYILRSVNPLYPNNTYVGMTVNPTRRLRQHNGELVGGAKATKTRQPYEMYCIISGFP-TLHDALSYEWHIKHP 76
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A0F2S0S7_9PROT (GIY-YIG domain-containing protein n=1 Tax=Rhodospirillaceae bacterium BRH_c57 TaxID=1629718 RepID=A0A0F2S0S7_9PROT) HSP 1 Score: 68.6 bits (166), Expect = 1.300e-13 Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1
Query: 22 LCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIK 213
L NE G TYVG T ARR+RQHN ++ GGA+ATRGRG W +YV D A+ A S E+++K
Sbjct: 2 LANERGHTYVGITTDVARRVRQHNGEVVGGARATRGRGVWCVVYVEDGFPGRAA-AQSREYYLK 64
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A5K0U819_9VIRU (GIY-YIG nuclease n=1 Tax=Yasminevirus sp. GU-2018 TaxID=2420051 RepID=A0A5K0U819_9VIRU) HSP 1 Score: 71.6 bits (174), Expect = 2.660e-13 Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 4 SHYCYALCN----ESGRTYVGYTVCPARRIRQHNSDIKGGAKATR--GRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
SHYCY L N + RTY GYTV P +RIRQHN +IKGGAK T+ G W I ++ +AL EW IKHP
Sbjct: 112 SHYCYILRNHHPPDLNRTYNGYTVNPRKRIRQHNQEIKGGAKYTKIWGNKSWEIIALIKGFP-DHHNALQCEWRIKHP 188
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A7S2GS18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GS18_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 3.040e-13 Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1
Query: 43 TYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
TY+G+TV PARRIRQHN +I GAK T PW + VV +S + ALS EWH +HP
Sbjct: 4 TYIGFTVNPARRIRQHNGEISAGAKRTHKCRPWEIVAVVHGFPHSTA-ALSFEWHWQHP 61 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1330 ID=mRNA_1330|Name=jgi.p|Trimin1|154484|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_18:724340..724558+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCCACTACTGCTACGCGTTGTGCAATGAAAGTGGACGAACATATGTback to top protein sequence of jgi.p|Trimin1|154484 >Trimin1|154484|gw1.18.325.1 ID=Trimin1|154484|gw1.18.325.1|Name=jgi.p|Trimin1|154484|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=73bp MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIback to top mRNA from alignment at Contig_18:724340..724558+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1330 ID=mRNA_1330|Name=jgi.p|Trimin1|154484|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_18:724340..724558+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:724340..724558+ >mRNA_1330 ID=mRNA_1330|Name=jgi.p|Trimin1|154484|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=219bp|location=Sequence derived from alignment at Contig_18:724340..724558+ (Tribonema minus UTEX_B_3156 )back to top |