mRNA_1330 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154484
Unique NamemRNA_1330
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A836CJ24_9STRA (GIY-YIG domain-containing protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ24_9STRA)

HSP 1 Score: 164 bits (414), Expect = 1.500e-51
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1
Query:    1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
            MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP
Sbjct:    1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 73          
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A836CN45_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN45_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.260e-43
Identity = 62/73 (84.93%), Postives = 71/73 (97.26%), Query Frame = 1
Query:    1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
            MSHYCYALCN+SGRTY+GYTVCP+RR+RQHNS IKGGAKATRGRGPWRFIYVV+ I+++AS+ALSLEWHIKHP
Sbjct:    1 MSHYCYALCNDSGRTYIGYTVCPSRRLRQHNSSIKGGAKATRGRGPWRFIYVVEYINFTASEALSLEWHIKHP 73          
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A836CIF4_9STRA (GIY-YIG domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIF4_9STRA)

HSP 1 Score: 101 bits (252), Expect = 7.410e-26
Identity = 41/73 (56.16%), Postives = 53/73 (72.60%), Query Frame = 1
Query:    1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
            M+H+CY + NE GRTYVGYTV P RR+RQHN  I GGA++T G+GPWRF +V+    + +   LS EWH+K P
Sbjct:    1 MTHFCYTIVNEQGRTYVGYTVLPKRRLRQHNGVITGGARSTAGKGPWRFAFVLTSESFDSHKGLSCEWHLKRP 73          
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A835ZCR8_9STRA (GIY-YIG domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.010e-25
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   13 CYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
            CY + NE GRTYVGYTV P RR+RQHN  +KGGA+ T G+GPWR++ V+    +    ALS EWH+KHP
Sbjct:    2 CYVIVNEQGRTYVGYTVNPKRRLRQHNGCLKGGARNTAGKGPWRYVIVLTSEAFDNRKALSAEWHLKHP 70          
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A6C0CV58_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0CV58_9ZZZZ)

HSP 1 Score: 84.0 bits (206), Expect = 5.210e-19
Identity = 41/78 (52.56%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    1 MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVV-----DCIDYSASDALSLEWHIKHP 219
            M +YCY + N + RTY GYTV   RR++QHN  I+GGAKATRGRGPW F+ ++     DCI    S A+  EW IK+P
Sbjct:    1 MVYYCYVIGNANDRTYNGYTVNLTRRLKQHNGVIQGGAKATRGRGPWEFVLILTSECWDCI----SVAMQHEWSIKYP 74          
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A6C0F1Y7_9ZZZZ (GIY-YIG domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0F1Y7_9ZZZZ)

HSP 1 Score: 81.6 bits (200), Expect = 7.960e-18
Identity = 37/77 (48.05%), Postives = 51/77 (66.23%), Query Frame = 1
Query:    7 HYCYALCNES------GRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
            +YCY L          GRTY GYTV    R+RQHN +IKGGA AT+ +GPW FI V+ C+D+++  A+ +EW I++P
Sbjct:   34 YYCYILGQTRHVRTGVGRTYNGYTVDLTHRLRQHNGEIKGGAFATKNKGPWEFIAVMTCLDWTSVRAMQVEWLIRYP 110          
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A3G4ZPN0_9VIRU (GIY-YIG nuclease n=1 Tax=Terrestrivirus sp. TaxID=2487775 RepID=A0A3G4ZPN0_9VIRU)

HSP 1 Score: 76.3 bits (186), Expect = 4.830e-16
Identity = 38/77 (49.35%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 MSHYCYALCNES----GRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
            MS+YCY L + +      TYVG TV P RR+RQHN ++ GGAKAT+ R P+    ++     +  DALS EWHIKHP
Sbjct:    1 MSYYCYILRSVNPLYPNNTYVGMTVNPTRRLRQHNGELVGGAKATKTRQPYEMYCIISGFP-TLHDALSYEWHIKHP 76          
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A0F2S0S7_9PROT (GIY-YIG domain-containing protein n=1 Tax=Rhodospirillaceae bacterium BRH_c57 TaxID=1629718 RepID=A0A0F2S0S7_9PROT)

HSP 1 Score: 68.6 bits (166), Expect = 1.300e-13
Identity = 34/64 (53.12%), Postives = 43/64 (67.19%), Query Frame = 1
Query:   22 LCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIK 213
            L NE G TYVG T   ARR+RQHN ++ GGA+ATRGRG W  +YV D     A+ A S E+++K
Sbjct:    2 LANERGHTYVGITTDVARRVRQHNGEVVGGARATRGRGVWCVVYVEDGFPGRAA-AQSREYYLK 64          
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A5K0U819_9VIRU (GIY-YIG nuclease n=1 Tax=Yasminevirus sp. GU-2018 TaxID=2420051 RepID=A0A5K0U819_9VIRU)

HSP 1 Score: 71.6 bits (174), Expect = 2.660e-13
Identity = 39/78 (50.00%), Postives = 46/78 (58.97%), Query Frame = 1
Query:    4 SHYCYALCN----ESGRTYVGYTVCPARRIRQHNSDIKGGAKATR--GRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
            SHYCY L N    +  RTY GYTV P +RIRQHN +IKGGAK T+  G   W  I ++        +AL  EW IKHP
Sbjct:  112 SHYCYILRNHHPPDLNRTYNGYTVNPRKRIRQHNQEIKGGAKYTKIWGNKSWEIIALIKGFP-DHHNALQCEWRIKHP 188          
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Match: A0A7S2GS18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GS18_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 3.040e-13
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   43 TYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFIYVVDCIDYSASDALSLEWHIKHP 219
            TY+G+TV PARRIRQHN +I  GAK T    PW  + VV    +S + ALS EWH +HP
Sbjct:    4 TYIGFTVNPARRIRQHNGEISAGAKRTHKCRPWEIVAVVHGFPHSTA-ALSFEWHWQHP 61          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154484 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ24_9STRA1.500e-51100.00GIY-YIG domain-containing protein (Fragment) n=2 T... [more]
A0A836CN45_9STRA3.260e-4384.93GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A836CIF4_9STRA7.410e-2656.16GIY-YIG domain-containing protein n=1 Tax=Tribonem... [more]
A0A835ZCR8_9STRA7.010e-2557.97GIY-YIG domain-containing protein (Fragment) n=1 T... [more]
A0A6C0CV58_9ZZZZ5.210e-1952.56GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A6C0F1Y7_9ZZZZ7.960e-1848.05GIY-YIG domain-containing protein n=1 Tax=viral me... [more]
A0A3G4ZPN0_9VIRU4.830e-1649.35GIY-YIG nuclease n=1 Tax=Terrestrivirus sp. TaxID=... [more]
A0A0F2S0S7_9PROT1.300e-1353.13GIY-YIG domain-containing protein n=1 Tax=Rhodospi... [more]
A0A5K0U819_9VIRU2.660e-1350.00GIY-YIG nuclease n=1 Tax=Yasminevirus sp. GU-2018 ... [more]
A0A7S2GS18_9STRA3.040e-1354.24Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:724340..724558 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154484|gw1.18.325.1
DescriptionGIY-YIG catalytic domain
COG categoryL
Max annot lvl5794|Apicomplexa
EggNOG OGsKOG3005@1|root,KOG3005@2759|Eukaryota,3YCJ4@5794|Apicomplexa,3YIMR@5796|Coccidia
Evalue3.43e-13
Seed ortholog5808.XP_002142784.1
Hectar predicted targeting categoryother localisation
TranscriptId154806
TrackFilteredModels1
ProteinId154484
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154484gene_1330Tribonema minus UTEX_B_3156 geneContig_18 724340..724558 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1330_1exon_1330_1Tribonema minus UTEX_B_3156 exonContig_18 724340..724558 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1330CDS_1330Tribonema minus UTEX_B_3156 CDSContig_18 724340..724558 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154484Trimin1|154484|gw1.18.325.1Tribonema minus UTEX_B_3156 polypeptideContig_18 724340..724558 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1330 ID=mRNA_1330|Name=jgi.p|Trimin1|154484|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_18:724340..724558+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCCACTACTGCTACGCGTTGTGCAATGAAAGTGGACGAACATATGT
AGGCTATACTGTATGCCCTGCCAGGCGTATCAGGCAGCACAACTCAGACA
TTAAAGGCGGAGCGAAAGCGACAAGAGGACGAGGCCCGTGGCGGTTCATA
TATGTAGTTGACTGCATAGACTATTCTGCAAGTGATGCACTGTCTCTAGA
GTGGCACATCAAGCACCCT
back to top

protein sequence of jgi.p|Trimin1|154484

>Trimin1|154484|gw1.18.325.1 ID=Trimin1|154484|gw1.18.325.1|Name=jgi.p|Trimin1|154484|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=73bp
MSHYCYALCNESGRTYVGYTVCPARRIRQHNSDIKGGAKATRGRGPWRFI
YVVDCIDYSASDALSLEWHIKHP
back to top

mRNA from alignment at Contig_18:724340..724558+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1330 ID=mRNA_1330|Name=jgi.p|Trimin1|154484|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=219bp|location=Sequence derived from alignment at Contig_18:724340..724558+ (Tribonema minus UTEX_B_3156 )
ATGAGCCACTACTGCTACGCGTTGTGCAATGAAAGTGGACGAACATATGT AGGCTATACTGTATGCCCTGCCAGGCGTATCAGGCAGCACAACTCAGACA TTAAAGGCGGAGCGAAAGCGACAAGAGGACGAGGCCCGTGGCGGTTCATA TATGTAGTTGACTGCATAGACTATTCTGCAAGTGATGCACTGTCTCTAGA GTGGCACATCAAGCACCCT
back to top

Coding sequence (CDS) from alignment at Contig_18:724340..724558+

>mRNA_1330 ID=mRNA_1330|Name=jgi.p|Trimin1|154484|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=219bp|location=Sequence derived from alignment at Contig_18:724340..724558+ (Tribonema minus UTEX_B_3156 )
ATGAGCCACTACTGCTACGCGTTGTGCAATGAAAGTGGACGAACATATGT
AGGCTATACTGTATGCCCTGCCAGGCGTATCAGGCAGCACAACTCAGACA
TTAAAGGCGGAGCGAAAGCGACAAGAGGACGAGGCCCGTGGCGGTTCATA
TATGTAGTTGACTGCATAGACTATTCTGCAAGTGATGCACTGTCTCTAGA
GTGGCACATCAAGCACCCT
back to top