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Homology
BLAST of jgi.p|Trimin1|157233 vs. uniprot
Match: A0A836CDZ6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDZ6_9STRA) HSP 1 Score: 102 bits (254), Expect = 4.490e-21 Identity = 45/45 (100.00%), Postives = 45/45 (100.00%), Query Frame = 1
Query: 1 MPDLRRHEQEHAGKLFKCPHEGCAAAFDRNDVLSSHLTVHSDARP 135
MPDLRRHEQEHAGKLFKCPHEGCAAAFDRNDVLSSHLTVHSDARP
Sbjct: 1 MPDLRRHEQEHAGKLFKCPHEGCAAAFDRNDVLSSHLTVHSDARP 45
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|157233|e_gw1.3.328.1 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Zinc finger C2H2-type/integrase DNA-binding domain |
| Ec32 ortholog | Ec-24_001700.1 |
| TranscriptId | 157555 |
| Track | FilteredModels1 |
| ProteinId | 157233 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_133 ID=mRNA_133|Name=jgi.p|Trimin1|157233|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_3:551711..552739- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCCTGACCTCCGGAGACACGAACAAGAGCACGCAGGAAAGCTGTTCAA
GTGTCCGCACGAGGGGTGTGCTGCTGCTTTCGATCGCAATGACGTCCTGT
CGTCGCACTTGACTGTGCACAGCGATGCGCGTCCGTTTAACTGCGAGCAC
AAAGACTGCGGGATGGCGTTCAAGACGCGCTCAACACTCAGCAAACACGA
GAAGACCCACAACAATGATCATCCGTTCGTCTGTGGTTTCAGCGGGTGTG
GGAGGGCCTTCGCACGCAGAGGCACCCTCGAGAACCACACAACAACGCAT
TATGACGACAAGCCTCATTTTTGTGAGCAGCCTGGGTGCGGGAGGGCATT
CAAGACATGTGCACAGCTGCACAACCACAACAAGACTCACGCCATTACGG
GACGGCGATTTGCCTGCAATGTGCGGGGATGTGGCAAGTCATTTAAGACC
CGCTCGTGCTTAGCGGCGCATGCTTCGACCCACAGCGATCTGCGCTGTTT
TGTCTGCAAGCACCTCAACTGCGGCAAAACCTTCAAAACCCAGAAGCATC
TCGATGTACACACCAGCATCCACATGACGCCAAAGCGGTACGCATGCGGG
TACTCAGGGTGTGAGGCCACATTCACACAGCGTGGCAACTTGACGACGCA
CATGCGGTCTCACACCCATGAGCGGCGTTTTGCCTGCTCACTGTGTGAAC
GGTCTTTTGTGAGGCGCTCGGTCCTGGAGCAGCATGTCCTGACCCACACG
GGCGAGCGACCATTCTTATGCCCTCACGAAGGCTGTGGGTCCTCCTTCAA
GCAAAAAACCCATCTCGACCAGCACCAACGGACGCATACTGGTGCGAAAC
CTTTTGCTTGTCCAGTCGCAGGTTGCGATCATCGGTGCGCCACTTCCGGT
GGCCTCATCACCCATGCCCGTACTCACAGTGGCTTGAAGCCATACGTGTG
CCAGCAACCGCATTGCGGACACGCGTGCACGACGTCAAGCGCACTTGCCG
TCCACACCAGACGCTACCACACCAAGGAG back to topprotein sequence of jgi.p|Trimin1|157233 >Trimin1|157233|e_gw1.3.328.1 ID=Trimin1|157233|e_gw1.3.328.1|Name=jgi.p|Trimin1|157233|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=343bp
MPDLRRHEQEHAGKLFKCPHEGCAAAFDRNDVLSSHLTVHSDARPFNCEH
KDCGMAFKTRSTLSKHEKTHNNDHPFVCGFSGCGRAFARRGTLENHTTTH
YDDKPHFCEQPGCGRAFKTCAQLHNHNKTHAITGRRFACNVRGCGKSFKT
RSCLAAHASTHSDLRCFVCKHLNCGKTFKTQKHLDVHTSIHMTPKRYACG
YSGCEATFTQRGNLTTHMRSHTHERRFACSLCERSFVRRSVLEQHVLTHT
GERPFLCPHEGCGSSFKQKTHLDQHQRTHTGAKPFACPVAGCDHRCATSG
GLITHARTHSGLKPYVCQQPHCGHACTTSSALAVHTRRYHTKE back to topmRNA from alignment at Contig_3:551711..552739- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_133 ID=mRNA_133|Name=jgi.p|Trimin1|157233|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1029bp|location=Sequence derived from alignment at Contig_3:551711..552739- (Tribonema minus UTEX_B_3156 )
ATGCCTGACCTCCGGAGACACGAACAAGAGCACGCAGGAAAGCTGTTCAA
GTGTCCGCACGAGGGGTGTGCTGCTGCTTTCGATCGCAATGACGTCCTGT
CGTCGCACTTGACTGTGCACAGCGATGCGCGTCCGTTTAACTGCGAGCAC
AAAGACTGCGGGATGGCGTTCAAGACGCGCTCAACACTCAGCAAACACGA
GAAGACCCACAACAATGATCATCCGTTCGTCTGTGGTTTCAGCGGGTGTG
GGAGGGCCTTCGCACGCAGAGGCACCCTCGAGAACCACACAACAACGCAT
TATGACGACAAGCCTCATTTTTGTGAGCAGCCTGGGTGCGGGAGGGCATT
CAAGACATGTGCACAGCTGCACAACCACAACAAGACTCACGCCATTACGG
GACGGCGATTTGCCTGCAATGTGCGGGGATGTGGCAAGTCATTTAAGACC
CGCTCGTGCTTAGCGGCGCATGCTTCGACCCACAGCGATCTGCGCTGTTT
TGTCTGCAAGCACCTCAACTGCGGCAAAACCTTCAAAACCCAGAAGCATC
TCGATGTACACACCAGCATCCACATGACGCCAAAGCGGTACGCATGCGGG
TACTCAGGGTGTGAGGCCACATTCACACAGCGTGGCAACTTGACGACGCA
CATGCGGTCTCACACCCATGAGCGGCGTTTTGCCTGCTCACTGTGTGAAC
GGTCTTTTGTGAGGCGCTCGGTCCTGGAGCAGCATGTCCTGACCCACACG
GGCGAGCGACCATTCTTATGCCCTCACGAAGGCTGTGGGTCCTCCTTCAA
GCAAAAAACCCATCTCGACCAGCACCAACGGACGCATACTGGTGCGAAAC
CTTTTGCTTGTCCAGTCGCAGGTTGCGATCATCGGTGCGCCACTTCCGGT
GGCCTCATCACCCATGCCCGTACTCACAGTGGCTTGAAGCCATACGTGTG
CCAGCAACCGCATTGCGGACACGCGTGCACGACGTCAAGCGCACTTGCCG
TCCACACCAGACGCTACCACACCAAGGAG back to topCoding sequence (CDS) from alignment at Contig_3:551711..552739- >mRNA_133 ID=mRNA_133|Name=jgi.p|Trimin1|157233|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1029bp|location=Sequence derived from alignment at Contig_3:551711..552739- (Tribonema minus UTEX_B_3156 )
ATGCCTGACCTCCGGAGACACGAACAAGAGCACGCAGGAAAGCTGTTCAA
GTGTCCGCACGAGGGGTGTGCTGCTGCTTTCGATCGCAATGACGTCCTGT
CGTCGCACTTGACTGTGCACAGCGATGCGCGTCCGTTTAACTGCGAGCAC
AAAGACTGCGGGATGGCGTTCAAGACGCGCTCAACACTCAGCAAACACGA
GAAGACCCACAACAATGATCATCCGTTCGTCTGTGGTTTCAGCGGGTGTG
GGAGGGCCTTCGCACGCAGAGGCACCCTCGAGAACCACACAACAACGCAT
TATGACGACAAGCCTCATTTTTGTGAGCAGCCTGGGTGCGGGAGGGCATT
CAAGACATGTGCACAGCTGCACAACCACAACAAGACTCACGCCATTACGG
GACGGCGATTTGCCTGCAATGTGCGGGGATGTGGCAAGTCATTTAAGACC
CGCTCGTGCTTAGCGGCGCATGCTTCGACCCACAGCGATCTGCGCTGTTT
TGTCTGCAAGCACCTCAACTGCGGCAAAACCTTCAAAACCCAGAAGCATC
TCGATGTACACACCAGCATCCACATGACGCCAAAGCGGTACGCATGCGGG
TACTCAGGGTGTGAGGCCACATTCACACAGCGTGGCAACTTGACGACGCA
CATGCGGTCTCACACCCATGAGCGGCGTTTTGCCTGCTCACTGTGTGAAC
GGTCTTTTGTGAGGCGCTCGGTCCTGGAGCAGCATGTCCTGACCCACACG
GGCGAGCGACCATTCTTATGCCCTCACGAAGGCTGTGGGTCCTCCTTCAA
GCAAAAAACCCATCTCGACCAGCACCAACGGACGCATACTGGTGCGAAAC
CTTTTGCTTGTCCAGTCGCAGGTTGCGATCATCGGTGCGCCACTTCCGGT
GGCCTCATCACCCATGCCCGTACTCACAGTGGCTTGAAGCCATACGTGTG
CCAGCAACCGCATTGCGGACACGCGTGCACGACGTCAAGCGCACTTGCCG
TCCACACCAGACGCTACCACACCAAGGAG back to top
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