mRNA_13270 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132285
Unique NamemRNA_13270
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132285 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_118contigContig_118:382390..382635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132285|gw1.118.25.1
Hectar predicted targeting categorymitochondrion
TranscriptId132607
TrackFilteredModels1
ProteinId132285
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132285gene_13270Tribonema minus UTEX_B_3156 geneContig_118 382390..382635 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13270_1exon_13270_1Tribonema minus UTEX_B_3156 exonContig_118 382390..382635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13270CDS_13270Tribonema minus UTEX_B_3156 CDSContig_118 382390..382635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132285Trimin1|132285|gw1.118.25.1Tribonema minus UTEX_B_3156 polypeptideContig_118 382390..382635 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13270 ID=mRNA_13270|Name=jgi.p|Trimin1|132285|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_118:382390..382635+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCCGCGGCCAGCAAGTCACGCTCCTCAGTCAGCGAGTCCCGCTCCTCAA
TCAGCGAGTCCCGCTCCTGAGTCAGCGAGTCCCGATCCTCCGTCAGCGAG
TCCCGCTCCACCGTCAGCGAGTCCCGCTCCTGCGCCAGCGAGTCCCGCTC
CCGCGTGAGCGAGTCGCGCTCCTCCCTGAGCGCTGCCGCCTCGCTGACGA
GCGCTGCCTTCTCCGCGCCGAGCGCCTGCGCGCGCGCGCACAGCGT
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protein sequence of jgi.p|Trimin1|132285

>Trimin1|132285|gw1.118.25.1 ID=Trimin1|132285|gw1.118.25.1|Name=jgi.p|Trimin1|132285|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=82bp
LRGQQVTLLSQRVPLLNQRVPLLSQRVPILRQRVPLHRQRVPLLRQRVPL
PRERVALLPERCRLADERCLLRAERLRARAQR
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mRNA from alignment at Contig_118:382390..382635+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13270 ID=mRNA_13270|Name=jgi.p|Trimin1|132285|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=246bp|location=Sequence derived from alignment at Contig_118:382390..382635+ (Tribonema minus UTEX_B_3156 )
CTCCGCGGCCAGCAAGTCACGCTCCTCAGTCAGCGAGTCCCGCTCCTCAA
TCAGCGAGTCCCGCTCCTGAGTCAGCGAGTCCCGATCCTCCGTCAGCGAG
TCCCGCTCCACCGTCAGCGAGTCCCGCTCCTGCGCCAGCGAGTCCCGCTC
CCGCGTGAGCGAGTCGCGCTCCTCCCTGAGCGCTGCCGCCTCGCTGACGA
GCGCTGCCTTCTCCGCGCCGAGCGCCTGCGCGCGCGCGCACAGCGT
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Coding sequence (CDS) from alignment at Contig_118:382390..382635+

>mRNA_13270 ID=mRNA_13270|Name=jgi.p|Trimin1|132285|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=246bp|location=Sequence derived from alignment at Contig_118:382390..382635+ (Tribonema minus UTEX_B_3156 )
CTCCGCGGCCAGCAAGTCACGCTCCTCAGTCAGCGAGTCCCGCTCCTCAA
TCAGCGAGTCCCGCTCCTGAGTCAGCGAGTCCCGATCCTCCGTCAGCGAG
TCCCGCTCCACCGTCAGCGAGTCCCGCTCCTGCGCCAGCGAGTCCCGCTC
CCGCGTGAGCGAGTCGCGCTCCTCCCTGAGCGCTGCCGCCTCGCTGACGA
GCGCTGCCTTCTCCGCGCCGAGCGCCTGCGCGCGCGCGCACAGCGT
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