mRNA_13221 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|9349
Unique NamemRNA_13221
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|9349 vs. uniprot
Match: A0A835ZDB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDB1_9STRA)

HSP 1 Score: 334 bits (857), Expect = 3.230e-115
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 3 
Query:   54 MRLESMERRRRQRAFDGGRARACVQYPPSGWPSGRAERCDGHGDGGGATYAKVHYHTPLSARCRTARLAAVXXXXXXXXXVRALIAVRLLCPAGALLLLCACMKLRRAHPRHHALLFAASINARLLIPLCCCRPEPVHTAGGLVRMRRGGGGGREGRGHGLLLSPLPSPHTLAW 575
            MRLESMERRRRQRAFDGGRARACVQYPPSGWPSGRAERCDGHGDGGGATYAKVHYHTPLSARCRTARLAAVXXXXXXXXXVRALIAVRLLCPAGALLLLCACMKLRRAHPRHHALLFAASINARLLIPLCCCRPEPVHTAGGLVRMRRGGGGGREGRGHGLLLSPLPSPHTLAW
Sbjct:    1 MRLESMERRRRQRAFDGGRARACVQYPPSGWPSGRAERCDGHGDGGGATYAKVHYHTPLSARCRTARLAAVXXXXXXXXXVRALIAVRLLCPAGALLLLCACMKLRRAHPRHHALLFAASINARLLIPLCCCRPEPVHTAGGLVRMRRGGGGGREGRGHGLLLSPLPSPHTLAW 174
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|9349 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZDB1_9STRA3.230e-115100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_113contigContig_113:492942..493580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|9349|CE9348_88
Hectar predicted targeting categorysignal anchor
TranscriptId9671
TrackFilteredModels1
ProteinId9349
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|9349gene_13221Tribonema minus UTEX_B_3156 geneContig_113 492942..493580 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13221_1exon_13221_1Tribonema minus UTEX_B_3156 exonContig_113 492942..493580 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13221UTR5_13221Tribonema minus UTEX_B_3156 five_prime_UTRContig_113 492942..492994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13221CDS_13221Tribonema minus UTEX_B_3156 CDSContig_113 492995..493519 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13221UTR3_13221Tribonema minus UTEX_B_3156 three_prime_UTRContig_113 493520..493580 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|9349Trimin1|9349|CE9348_88Tribonema minus UTEX_B_3156 polypeptideContig_113 492995..493519 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13221 ID=mRNA_13221|Name=jgi.p|Trimin1|9349|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_113:492942..493580+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCGGTTCTGTCCTTGCTGCTCTCTGTTTCTTTGCGCGCAGGTATGAGGG
CGAATGCGACTGGAGTCTATGGAGCGGCGGCGGCGGCAGCGTGCTTTTGA
TGGTGGCAGGGCGCGTGCCTGTGTCCAGTACCCCCCGTCCGGCTGGCCCA
GTGGCCGAGCTGAGCGCTGTGACGGGCACGGGGACGGCGGCGGTGCCACA
TATGCCAAGGTCCATTACCACACCCCACTCTCTGCGCGTTGCCGGACCGC
CCGCTTGGCTGCTGTAGCTGTTGCCGCCGCCGCCGCTGCTGCTGTGCGTG
CGCTGATCGCTGTGCGCCTGCTGTGTCCGGCCGGAGCGCTCTTGCTGCTG
TGCGCGTGCATGAAATTGCGGCGCGCACACCCCAGGCACCACGCACTGCT
CTTCGCTGCGAGTATTAACGCCCGGCTGCTTATTCCACTCTGCTGTTGCC
GACCGGAACCTGTGCATACGGCGGGCGGGTTGGTGCGCATGCGGCGGGGG
GGGGGGGGGGGGCGGGAAGGCCGGGGACACGGGCTATTATTGTCCCCCCT
CCCCTCCCCCCATACTCTGGCGTGGTGAGCGATGGCACAAGAGGCGGTGC
TAGGGGGCGGGGTGGGGGTAAAGGGGATCGCCCCCAGGG
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protein sequence of jgi.p|Trimin1|9349

>Trimin1|9349|CE9348_88 ID=Trimin1|9349|CE9348_88|Name=jgi.p|Trimin1|9349|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
MRLESMERRRRQRAFDGGRARACVQYPPSGWPSGRAERCDGHGDGGGATY
AKVHYHTPLSARCRTARLAAVAVAAAAAAAVRALIAVRLLCPAGALLLLC
ACMKLRRAHPRHHALLFAASINARLLIPLCCCRPEPVHTAGGLVRMRRGG
GGGREGRGHGLLLSPLPSPHTLAW*
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mRNA from alignment at Contig_113:492942..493580+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13221 ID=mRNA_13221|Name=jgi.p|Trimin1|9349|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=639bp|location=Sequence derived from alignment at Contig_113:492942..493580+ (Tribonema minus UTEX_B_3156 )
CGCGGTTCTGTCCTTGCTGCTCTCTGTTTCTTTGCGCGCAGGTATGAGGG
CGAATGCGACTGGAGTCTATGGAGCGGCGGCGGCGGCAGCGTGCTTTTGA
TGGTGGCAGGGCGCGTGCCTGTGTCCAGTACCCCCCGTCCGGCTGGCCCA
GTGGCCGAGCTGAGCGCTGTGACGGGCACGGGGACGGCGGCGGTGCCACA
TATGCCAAGGTCCATTACCACACCCCACTCTCTGCGCGTTGCCGGACCGC
CCGCTTGGCTGCTGTAGCTGTTGCCGCCGCCGCCGCTGCTGCTGTGCGTG
CGCTGATCGCTGTGCGCCTGCTGTGTCCGGCCGGAGCGCTCTTGCTGCTG
TGCGCGTGCATGAAATTGCGGCGCGCACACCCCAGGCACCACGCACTGCT
CTTCGCTGCGAGTATTAACGCCCGGCTGCTTATTCCACTCTGCTGTTGCC
GACCGGAACCTGTGCATACGGCGGGCGGGTTGGTGCGCATGCGGCGGGGG
GGGGGGGGGGGGCGGGAAGGCCGGGGACACGGGCTATTATTGTCCCCCCT
CCCCTCCCCCCATACTCTGGCGTGGTGAGCGATGGCACAAGAGGCGGTGC
TAGGGGGCGGGGTGGGGGTAAAGGGGATCGCCCCCAGGG
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Coding sequence (CDS) from alignment at Contig_113:492942..493580+

>mRNA_13221 ID=mRNA_13221|Name=jgi.p|Trimin1|9349|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=525bp|location=Sequence derived from alignment at Contig_113:492942..493580+ (Tribonema minus UTEX_B_3156 )
ATGCGACTGGAGTCTATGGAGCGGCGGCGGCGGCAGCGTGCTTTTGATGG
TGGCAGGGCGCGTGCCTGTGTCCAGTACCCCCCGTCCGGCTGGCCCAGTG
GCCGAGCTGAGCGCTGTGACGGGCACGGGGACGGCGGCGGTGCCACATAT
GCCAAGGTCCATTACCACACCCCACTCTCTGCGCGTTGCCGGACCGCCCG
CTTGGCTGCTGTAGCTGTTGCCGCCGCCGCCGCTGCTGCTGTGCGTGCGC
TGATCGCTGTGCGCCTGCTGTGTCCGGCCGGAGCGCTCTTGCTGCTGTGC
GCGTGCATGAAATTGCGGCGCGCACACCCCAGGCACCACGCACTGCTCTT
CGCTGCGAGTATTAACGCCCGGCTGCTTATTCCACTCTGCTGTTGCCGAC
CGGAACCTGTGCATACGGCGGGCGGGTTGGTGCGCATGCGGCGGGGGGGG
GGGGGGGGGCGGGAAGGCCGGGGACACGGGCTATTATTGTCCCCCCTCCC
CTCCCCCCATACTCTGGCGTGGTGA
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