mRNA_13168 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174316
Unique NamemRNA_13168
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|174316 vs. uniprot
Match: A0A835ZG33_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG33_9STRA)

HSP 1 Score: 165 bits (417), Expect = 1.360e-46
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLRTSICWQTGIATLSDSEHCLGGLAALTDLSWGTHELADAVRVPRSIGALQALTKLHITCSR 441
            MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLRTSICWQTGIATLSDSEHCLGGLAALTDLSWGTHELADAVRVPRSIGALQALTKLHITCSR
Sbjct:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLRTSICWQTGIATLSDSEHCLGGLAALTDLSWGTHELADAVRVPRSIGALQALTKLHITCSR 147
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BLAST of jgi.p|Trimin1|174316 vs. uniprot
Match: A0A836CND2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND2_9STRA)

HSP 1 Score: 141 bits (355), Expect = 2.460e-37
Identity = 134/147 (91.16%), Postives = 136/147 (92.52%), Query Frame = 1 
Query:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLRTSICWQTGIATLSDSEHCLGGLAALTDLSWGTHELADAVRVPRSIGALQALTKLHITCSR 441
            MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ARLRT ICWQTG+ATLS SEHCL GLAALTDLSWGT E ADAV VPRSIGA +ALTKL ITCSR
Sbjct:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGLARLRTFICWQTGLATLSASEHCLRGLAALTDLSWGTREPADAVSVPRSIGAFRALTKLSITCSR 147
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BLAST of jgi.p|Trimin1|174316 vs. uniprot
Match: A0A836CKM6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKM6_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.400e-7
Identity = 104/148 (70.27%), Postives = 114/148 (77.03%), Query Frame = 1 
Query:    1 MPLLPESIGNLIALETLKLQGWQALTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARLRTSICWQTGIATLSDSEHCLGGLAALTDLSWGTH-ELADAVRVPRSIGALQALTKLHITCSR 441
            + LLPESIGNL ALETL L  W+A+   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       C  T +ATLS  E C+GGLA+L+  SWG   E A A++VPR IG LQALT L +  SR
Sbjct:   28 LSLLPESIGNLAALETLGLSEWKAIARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLRCCNTRVATLS--EQCIGGLASLSKFSWGGKPENAAAIQVPRGIGKLQALTALSLHSSR 173
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174316 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835ZG33_9STRA1.360e-46100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CND2_9STRA2.460e-3791.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CKM6_9STRA1.400e-770.27Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_113contigContig_113:106998..107771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174316|e_gw1.113.14.1
Hectar predicted targeting categoryother localisation
TranscriptId174638
TrackFilteredModels1
ProteinId174316
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174316gene_13168Tribonema minus UTEX_B_3156 geneContig_113 106998..107771 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13168_1exon_13168_1Tribonema minus UTEX_B_3156 exonContig_113 106998..107771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13168CDS_13168Tribonema minus UTEX_B_3156 CDSContig_113 106998..107771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174316Trimin1|174316|e_gw1.113.14.1Tribonema minus UTEX_B_3156 polypeptideContig_113 106998..107771 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13168 ID=mRNA_13168|Name=jgi.p|Trimin1|174316|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_113:106998..107771+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTGTTGCCTGAGTCAATCGGCAACCTCATTGCGCTAGAGACGCT
CAAGCTGCAGGGGTGGCAAGCCCTCACGCACCTGCCCGACAGCATCGCCA
GGCTGCAGCGGCTCCGCACGCTCGACCTGTCCGACTGCACGGCGCTGGCA
AAGCTGCCGGACCGCATTGGCGACCTCGCGTCCCTCACGCACCTCGTCGT
GCACTCGTGCGAGCAGCTCGCGAGCCTGCCGGACAGCTTCTACAGCCTCG
CGCGGCTGAGGACTTCCATCTGCTGGCAGACCGGGATAGCAACGCTCAGC
GACTCGGAGCACTGCCTCGGCGGCCTCGCGGCCCTCACGGATCTCAGCTG
GGGGACGCACGAGCTCGCGGATGCCGTGCGCGTGCCGCGCAGCATCGGCG
CGCTTCAGGCGTTGACGAAGCTCCACATCACCTGCAGCCGGCTAGTAAGT
TTGCCGGACAGCATCGGCGAGCTGCAGGCCTTGGCCGCGCTCAACCTCAG
CTGTGAAGCGCTCGGCTGCCTGCCGGAAAGCGTCGTCAAACTTCAAGCGT
TGACATCGCTCAACCTCAACTACTGCCACGCGCTGACGCACCTGCCCGAT
CGCGTGGGCGAACTTCAAGCGCTCACCAGCCTAGATCTGTATAGATGCTA
CGCTTTGTCTAGCCTGCCTGACTCCATATTGGAGTTGAAGGCGCTGCAGC
GTGTGCAGCTAGGGAACTGCAGACTGCTGGTCCATGTCCCAGAAAAAATA
CAGAAGCTGTATGGGGGTTACTGA
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protein sequence of jgi.p|Trimin1|174316

>Trimin1|174316|e_gw1.113.14.1 ID=Trimin1|174316|e_gw1.113.14.1|Name=jgi.p|Trimin1|174316|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=258bp
MPLLPESIGNLIALETLKLQGWQALTHLPDSIARLQRLRTLDLSDCTALA
KLPDRIGDLASLTHLVVHSCEQLASLPDSFYSLARLRTSICWQTGIATLS
DSEHCLGGLAALTDLSWGTHELADAVRVPRSIGALQALTKLHITCSRLVS
LPDSIGELQALAALNLSCEALGCLPESVVKLQALTSLNLNYCHALTHLPD
RVGELQALTSLDLYRCYALSSLPDSILELKALQRVQLGNCRLLVHVPEKI
QKLYGGY*
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mRNA from alignment at Contig_113:106998..107771+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13168 ID=mRNA_13168|Name=jgi.p|Trimin1|174316|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=774bp|location=Sequence derived from alignment at Contig_113:106998..107771+ (Tribonema minus UTEX_B_3156 )
ATGCCGCTGTTGCCTGAGTCAATCGGCAACCTCATTGCGCTAGAGACGCT
CAAGCTGCAGGGGTGGCAAGCCCTCACGCACCTGCCCGACAGCATCGCCA
GGCTGCAGCGGCTCCGCACGCTCGACCTGTCCGACTGCACGGCGCTGGCA
AAGCTGCCGGACCGCATTGGCGACCTCGCGTCCCTCACGCACCTCGTCGT
GCACTCGTGCGAGCAGCTCGCGAGCCTGCCGGACAGCTTCTACAGCCTCG
CGCGGCTGAGGACTTCCATCTGCTGGCAGACCGGGATAGCAACGCTCAGC
GACTCGGAGCACTGCCTCGGCGGCCTCGCGGCCCTCACGGATCTCAGCTG
GGGGACGCACGAGCTCGCGGATGCCGTGCGCGTGCCGCGCAGCATCGGCG
CGCTTCAGGCGTTGACGAAGCTCCACATCACCTGCAGCCGGCTAGTAAGT
TTGCCGGACAGCATCGGCGAGCTGCAGGCCTTGGCCGCGCTCAACCTCAG
CTGTGAAGCGCTCGGCTGCCTGCCGGAAAGCGTCGTCAAACTTCAAGCGT
TGACATCGCTCAACCTCAACTACTGCCACGCGCTGACGCACCTGCCCGAT
CGCGTGGGCGAACTTCAAGCGCTCACCAGCCTAGATCTGTATAGATGCTA
CGCTTTGTCTAGCCTGCCTGACTCCATATTGGAGTTGAAGGCGCTGCAGC
GTGTGCAGCTAGGGAACTGCAGACTGCTGGTCCATGTCCCAGAAAAAATA
CAGAAGCTGTATGGGGGTTACTGA
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Coding sequence (CDS) from alignment at Contig_113:106998..107771+

>mRNA_13168 ID=mRNA_13168|Name=jgi.p|Trimin1|174316|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=774bp|location=Sequence derived from alignment at Contig_113:106998..107771+ (Tribonema minus UTEX_B_3156 )
ATGCCGCTGTTGCCTGAGTCAATCGGCAACCTCATTGCGCTAGAGACGCT
CAAGCTGCAGGGGTGGCAAGCCCTCACGCACCTGCCCGACAGCATCGCCA
GGCTGCAGCGGCTCCGCACGCTCGACCTGTCCGACTGCACGGCGCTGGCA
AAGCTGCCGGACCGCATTGGCGACCTCGCGTCCCTCACGCACCTCGTCGT
GCACTCGTGCGAGCAGCTCGCGAGCCTGCCGGACAGCTTCTACAGCCTCG
CGCGGCTGAGGACTTCCATCTGCTGGCAGACCGGGATAGCAACGCTCAGC
GACTCGGAGCACTGCCTCGGCGGCCTCGCGGCCCTCACGGATCTCAGCTG
GGGGACGCACGAGCTCGCGGATGCCGTGCGCGTGCCGCGCAGCATCGGCG
CGCTTCAGGCGTTGACGAAGCTCCACATCACCTGCAGCCGGCTAGTAAGT
TTGCCGGACAGCATCGGCGAGCTGCAGGCCTTGGCCGCGCTCAACCTCAG
CTGTGAAGCGCTCGGCTGCCTGCCGGAAAGCGTCGTCAAACTTCAAGCGT
TGACATCGCTCAACCTCAACTACTGCCACGCGCTGACGCACCTGCCCGAT
CGCGTGGGCGAACTTCAAGCGCTCACCAGCCTAGATCTGTATAGATGCTA
CGCTTTGTCTAGCCTGCCTGACTCCATATTGGAGTTGAAGGCGCTGCAGC
GTGTGCAGCTAGGGAACTGCAGACTGCTGGTCCATGTCCCAGAAAAAATA
CAGAAGCTGTATGGGGGTTACTGA
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