mRNA_1314 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CJ85_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ85_9STRA) HSP 1 Score: 280 bits (715), Expect = 1.800e-95 Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1 Query: 1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF Sbjct: 1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 136
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835Z9D1_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D1_9STRA) HSP 1 Score: 241 bits (616), Expect = 2.270e-80 Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 1 Query: 1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408 QVDVYESETTR+RYAAARESLAFDG+DTTESWVFHGTA ENVPKIMCAGFRVGGVGEG VAIK+GAT+G GVYAATGPATPIAYSA G R+VILARALRG VGA PG+G+SWPA+ DWWVFADSAQLLPVYVVHF Sbjct: 1 QVDVYESETTRRRYAAARESLAFDGVDTTESWVFHGTARENVPKIMCAGFRVGGVGEGSVAIKNGATYGNGVYAATGPATPIAYSARNGSRSVILARALRGRVGACPGEGDSWPAKLDWWVFADSAQLLPVYVVHF 136
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CJ18_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ18_9STRA) HSP 1 Score: 206 bits (523), Expect = 3.400e-66 Identity = 108/138 (78.26%), Postives = 116/138 (84.06%), Query Frame = 1 Query: 1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSA--CTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408 QVDVYESETTRQRYAAAR+SLAFDG+DTTESWVFHGTA EN+ KIMCAGFRVGG EG VAIKHGA++G GVYAATGPATP+ YS G RAVIL+RALRG VGAR G GNSW WVFADSAQLLPVY+VHF Sbjct: 1 QVDVYESETTRQRYAAARKSLAFDGVDTTESWVFHGTARENIAKIMCAGFRVGG--EGCVAIKHGASYGNGVYAATGPATPVTYSDRNLNGSRAVILSRALRGRVGARQGLGNSWSGASYCWVFADSAQLLPVYMVHF 136
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835YTR3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTR3_9STRA) HSP 1 Score: 194 bits (494), Expect = 1.310e-61 Identity = 101/136 (74.26%), Postives = 111/136 (81.62%), Query Frame = 1 Query: 1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTG-GRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVH 405 QVDVY+S+TTRQRY AA SLAFDGI+T ESWVFH TAH+N+ KIMC G VGG EGGVAIK+GAT+G GVYAATGPATP+ YS G +AVILARAL G G R G GNSWPA+ DWWVFADSAQLLPVYVVH Sbjct: 10 QVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGG--EGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVH 143
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CJE6_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE6_9STRA) HSP 1 Score: 169 bits (428), Expect = 9.970e-52 Identity = 92/136 (67.65%), Postives = 101/136 (74.26%), Query Frame = 1 Query: 1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGG--RAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVV 402 QVDVYESE TRQ+YAAAR +LAFDG DT E WVFHGTA ENVP+IMC GFR+GGV G + +G G GVYAATGP TPI YS +AVILARAL G VGA G+SW RDWWVFADSAQL+PVYVV Sbjct: 4 QVDVYESEITRQKYAAARGALAFDGKDTHELWVFHGTAPENVPRIMCGGFRIGGVDVG---VTNGTALGLGVYAATGPDTPIHYSFDDAAERQAVILARALPGEVGAASHQGDSWRGGRDWWVFADSAQLVPVYVV 136
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CFU3_9STRA (WWE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU3_9STRA) HSP 1 Score: 117 bits (294), Expect = 4.110e-29 Identity = 73/154 (47.40%), Postives = 92/154 (59.74%), Query Frame = 1 Query: 4 VDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRA---VILARALRGCVGAR------PGDGNSW---------PA-RRDWWVFADSAQLLPVYVVHF 408 VDVYES TR+ Y R LA D DT E+WVFHG+ +NV KI GF+VGG G+A+K+GA +G GVY A GP+ P++Y+ G + VILARA++G + P G+SW PA DW VF +AQLLPVYVVHF Sbjct: 209 VDVYESAATREAYDKMRAQLADDRRDTQETWVFHGSDRKNVKKICVGGFKVGG---DGIAVKNGAIYGNGVYTAIGPSAPLSYATSHGAHSKGCVILARAMKGRHTRQSNWLNSPDAGDSWGTADANGTKPAGTEDWVVFRATAQLLPVYVVHF 359
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835YR34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR34_9STRA) HSP 1 Score: 104 bits (259), Expect = 1.520e-26 Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1 Query: 136 MCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408 MC GF++GG G +AIK+GA FG G+Y A GP TP YSA +G AVILARAL+G VG + +SW A +DWWVF +S QLLP YVVH+ Sbjct: 1 MCGGFKIGGTGH--LAIKNGAAFGHGLYTAIGPKTPAMYSASSGCCAVILARALKGTVGEEVCERDSWTAGKDWWVFRNSNQLLPQYVVHY 89
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835YPS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS2_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.750e-25 Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1 Query: 136 MCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408 MC GF++GG G +AIK+GA FG G+Y A GP TP YSA +G AVILARAL+G VG G+SW + WWVF +S QLLP YVVH+ Sbjct: 1 MCGGFKIGGTGR--MAIKNGAAFGHGLYTAIGPKTPAMYSASSGCCAVILARALKGTVGKEVCAGDSWTVGKHWWVFRNSNQLLPQYVVHY 89
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CHI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHI6_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.170e-23 Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 1 Query: 40 YAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYS-ACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408 + A + L G T E+WVFH T +N+P IMC GFRV G G + +G+ G GVYAA+GP + Y+ G +AVILARAL+G G R G G+ W A +W VF AQLLP YVV++ Sbjct: 35 FNAKKSELQSAGKSTDEAWVFHATHRDNIPAIMCTGFRVCGSGAA-FPVLNGSAHGYGVYAASGPPSINVYANEVDGTKAVILARALKGQEGER-GQGDRWGAGGNWRVFRSGAQLLPCYVVYY 156
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835Z1A1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A1_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 6.060e-18 Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1 Query: 1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAY 252 QVDVYESETTR + + R + A G E+WVFHGT N IM GF+VGGV + G+ + +GA +G GVY AT P TP+AY Sbjct: 1 QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGV-DAGIPVVNGAAYGHGVYMATTPLTPMAY 83 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1314 ID=mRNA_1314|Name=jgi.p|Trimin1|146318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=408bp|location=Sequence derived from alignment at Contig_18:622774..624044- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGTGGACGTGTACGAGAGCGAGACCACGCGCCAGCGCTACGCGGCCGCback to top protein sequence of jgi.p|Trimin1|146318 >Trimin1|146318|gw1.18.229.1 ID=Trimin1|146318|gw1.18.229.1|Name=jgi.p|Trimin1|146318|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFback to top mRNA from alignment at Contig_18:622774..624044- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_1314 ID=mRNA_1314|Name=jgi.p|Trimin1|146318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1271bp|location=Sequence derived from alignment at Contig_18:622774..624044- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_18:622774..624044- >mRNA_1314 ID=mRNA_1314|Name=jgi.p|Trimin1|146318|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_18:622774..624044- (Tribonema minus UTEX_B_3156 )back to top |