mRNA_1314 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|146318
Unique NamemRNA_1314
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CJ85_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ85_9STRA)

HSP 1 Score: 280 bits (715), Expect = 1.800e-95
Identity = 136/136 (100.00%), Postives = 136/136 (100.00%), Query Frame = 1
Query:    1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408
            QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF
Sbjct:    1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 136          
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835Z9D1_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9D1_9STRA)

HSP 1 Score: 241 bits (616), Expect = 2.270e-80
Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 1
Query:    1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408
            QVDVYESETTR+RYAAARESLAFDG+DTTESWVFHGTA ENVPKIMCAGFRVGGVGEG VAIK+GAT+G GVYAATGPATPIAYSA  G R+VILARALRG VGA PG+G+SWPA+ DWWVFADSAQLLPVYVVHF
Sbjct:    1 QVDVYESETTRRRYAAARESLAFDGVDTTESWVFHGTARENVPKIMCAGFRVGGVGEGSVAIKNGATYGNGVYAATGPATPIAYSARNGSRSVILARALRGRVGACPGEGDSWPAKLDWWVFADSAQLLPVYVVHF 136          
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CJ18_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ18_9STRA)

HSP 1 Score: 206 bits (523), Expect = 3.400e-66
Identity = 108/138 (78.26%), Postives = 116/138 (84.06%), Query Frame = 1
Query:    1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSA--CTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408
            QVDVYESETTRQRYAAAR+SLAFDG+DTTESWVFHGTA EN+ KIMCAGFRVGG  EG VAIKHGA++G GVYAATGPATP+ YS     G RAVIL+RALRG VGAR G GNSW      WVFADSAQLLPVY+VHF
Sbjct:    1 QVDVYESETTRQRYAAARKSLAFDGVDTTESWVFHGTARENIAKIMCAGFRVGG--EGCVAIKHGASYGNGVYAATGPATPVTYSDRNLNGSRAVILSRALRGRVGARQGLGNSWSGASYCWVFADSAQLLPVYMVHF 136          
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835YTR3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTR3_9STRA)

HSP 1 Score: 194 bits (494), Expect = 1.310e-61
Identity = 101/136 (74.26%), Postives = 111/136 (81.62%), Query Frame = 1
Query:    1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTG-GRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVH 405
            QVDVY+S+TTRQRY AA  SLAFDGI+T ESWVFH TAH+N+ KIMC G  VGG  EGGVAIK+GAT+G GVYAATGPATP+ YS   G  +AVILARAL G  G R G GNSWPA+ DWWVFADSAQLLPVYVVH
Sbjct:   10 QVDVYKSKTTRQRYQAALASLAFDGINTDESWVFHSTAHDNIIKIMCGGLCVGG--EGGVAIKNGATYGNGVYAATGPATPMTYSTGRGTNQAVILARALHGRAGTRIGQGNSWPAKWDWWVFADSAQLLPVYVVH 143          
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CJE6_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE6_9STRA)

HSP 1 Score: 169 bits (428), Expect = 9.970e-52
Identity = 92/136 (67.65%), Postives = 101/136 (74.26%), Query Frame = 1
Query:    1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGG--RAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVV 402
            QVDVYESE TRQ+YAAAR +LAFDG DT E WVFHGTA ENVP+IMC GFR+GGV  G   + +G   G GVYAATGP TPI YS       +AVILARAL G VGA    G+SW   RDWWVFADSAQL+PVYVV
Sbjct:    4 QVDVYESEITRQKYAAARGALAFDGKDTHELWVFHGTAPENVPRIMCGGFRIGGVDVG---VTNGTALGLGVYAATGPDTPIHYSFDDAAERQAVILARALPGEVGAASHQGDSWRGGRDWWVFADSAQLVPVYVV 136          
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CFU3_9STRA (WWE domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU3_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.110e-29
Identity = 73/154 (47.40%), Postives = 92/154 (59.74%), Query Frame = 1
Query:    4 VDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRA---VILARALRGCVGAR------PGDGNSW---------PA-RRDWWVFADSAQLLPVYVVHF 408
            VDVYES  TR+ Y   R  LA D  DT E+WVFHG+  +NV KI   GF+VGG    G+A+K+GA +G GVY A GP+ P++Y+   G  +   VILARA++G    +      P  G+SW         PA   DW VF  +AQLLPVYVVHF
Sbjct:  209 VDVYESAATREAYDKMRAQLADDRRDTQETWVFHGSDRKNVKKICVGGFKVGG---DGIAVKNGAIYGNGVYTAIGPSAPLSYATSHGAHSKGCVILARAMKGRHTRQSNWLNSPDAGDSWGTADANGTKPAGTEDWVVFRATAQLLPVYVVHF 359          
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835YR34_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR34_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.520e-26
Identity = 53/91 (58.24%), Postives = 65/91 (71.43%), Query Frame = 1
Query:  136 MCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408
            MC GF++GG G   +AIK+GA FG G+Y A GP TP  YSA +G  AVILARAL+G VG    + +SW A +DWWVF +S QLLP YVVH+
Sbjct:    1 MCGGFKIGGTGH--LAIKNGAAFGHGLYTAIGPKTPAMYSASSGCCAVILARALKGTVGEEVCERDSWTAGKDWWVFRNSNQLLPQYVVHY 89          
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835YPS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPS2_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.750e-25
Identity = 52/91 (57.14%), Postives = 63/91 (69.23%), Query Frame = 1
Query:  136 MCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408
            MC GF++GG G   +AIK+GA FG G+Y A GP TP  YSA +G  AVILARAL+G VG     G+SW   + WWVF +S QLLP YVVH+
Sbjct:    1 MCGGFKIGGTGR--MAIKNGAAFGHGLYTAIGPKTPAMYSASSGCCAVILARALKGTVGKEVCAGDSWTVGKHWWVFRNSNQLLPQYVVHY 89          
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A836CHI6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHI6_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 1.170e-23
Identity = 58/124 (46.77%), Postives = 75/124 (60.48%), Query Frame = 1
Query:   40 YAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYS-ACTGGRAVILARALRGCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF 408
            + A +  L   G  T E+WVFH T  +N+P IMC GFRV G G     + +G+  G GVYAA+GP +   Y+    G +AVILARAL+G  G R G G+ W A  +W VF   AQLLP YVV++
Sbjct:   35 FNAKKSELQSAGKSTDEAWVFHATHRDNIPAIMCTGFRVCGSGAA-FPVLNGSAHGYGVYAASGPPSINVYANEVDGTKAVILARALKGQEGER-GQGDRWGAGGNWRVFRSGAQLLPCYVVYY 156          
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Match: A0A835Z1A1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 6.060e-18
Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAY 252
            QVDVYESETTR  + + R + A  G    E+WVFHGT   N   IM  GF+VGGV + G+ + +GA +G GVY AT P TP+AY
Sbjct:    1 QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGV-DAGIPVVNGAAYGHGVYMATTPLTPMAY 83          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|146318 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CJ85_9STRA1.800e-95100.00PARP catalytic domain-containing protein (Fragment... [more]
A0A835Z9D1_9STRA2.270e-8087.50PARP catalytic domain-containing protein (Fragment... [more]
A0A836CJ18_9STRA3.400e-6678.26PARP catalytic domain-containing protein (Fragment... [more]
A0A835YTR3_9STRA1.310e-6174.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJE6_9STRA9.970e-5267.65PARP catalytic domain-containing protein (Fragment... [more]
A0A836CFU3_9STRA4.110e-2947.40WWE domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YR34_9STRA1.520e-2658.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YPS2_9STRA1.750e-2557.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CHI6_9STRA1.170e-2346.77Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z1A1_9STRA6.060e-1852.38Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:622774..624044 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|146318|gw1.18.229.1
DescriptionPoly(ADP-ribose) polymerase catalytic domain
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2D08G@1|root,2SD6R@2759|Eukaryota
Evalue3.28e-24
Seed ortholog227086.JGI_V11_130672
Hectar predicted targeting categoryother localisation
TranscriptId146640
TrackFilteredModels1
ProteinId146318
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146318gene_1314Tribonema minus UTEX_B_3156 geneContig_18 622774..624044 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|146318Trimin1|146318|gw1.18.229.1Tribonema minus UTEX_B_3156 polypeptideContig_18 622774..624044 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1314_2exon_1314_2Tribonema minus UTEX_B_3156 exonContig_18 622774..622946 -
exon_1314_1exon_1314_1Tribonema minus UTEX_B_3156 exonContig_18 623810..624044 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1314CDS_1314Tribonema minus UTEX_B_3156 CDSContig_18 623810..624044 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1314 ID=mRNA_1314|Name=jgi.p|Trimin1|146318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=408bp|location=Sequence derived from alignment at Contig_18:622774..624044- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGTGGACGTGTACGAGAGCGAGACCACGCGCCAGCGCTACGCGGCCGC
GCGCGAGAGCCTGGCCTTTGACGGCATTGACACCACCGAGTCGTGGGTGT
TCCACGGCACGGCGCACGAGAACGTGCCCAAGATCATGTGCGCGGGGTTC
CGCGTTGGCGGCGTGGGGGAGGGCGGCGTGGCCATCAAGCACGGCGCCAC
TTTTGGCACGGGCGTGTACGCCGCCACCGGCCCAGCGACGCCCATCGCCT
ACAGCGCGTGCACAGGCGGCCGCGCCGTGATCCTCGCGCGCGCGCTGCGC
GGCTGCGTCGGCGCGCGCCCCGGCGACGGCAACTCGTGGCCCGCGCGACG
CGACTGGTGGGTCTTCGCGGACAGCGCTCAGCTCCTGCCTGTCTACGTCG
TGCACTTT
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protein sequence of jgi.p|Trimin1|146318

>Trimin1|146318|gw1.18.229.1 ID=Trimin1|146318|gw1.18.229.1|Name=jgi.p|Trimin1|146318|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=136bp
QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGF
RVGGVGEGGVAIKHGATFGTGVYAATGPATPIAYSACTGGRAVILARALR
GCVGARPGDGNSWPARRDWWVFADSAQLLPVYVVHF
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mRNA from alignment at Contig_18:622774..624044-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1314 ID=mRNA_1314|Name=jgi.p|Trimin1|146318|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1271bp|location=Sequence derived from alignment at Contig_18:622774..624044- (Tribonema minus UTEX_B_3156 )
CAGGTGGACGTGTACGAGAGCGAGACCACGCGCCAGCGCTACGCGGCCGC GCGCGAGAGCCTGGCCTTTGACGGCATTGACACCACCGAGTCGTGGGTGT TCCACGGCACGGCGCACGAGAACGTGCCCAAGATCATGTGCGCGGGGTTC CGCGTTGGCGGCGTGGGGGAGGGCGGCGTGGCCATCAAGCACGGCGCCAC TTTTGGCACGGGCGTGTACGCCGCCACCGGCCCAGGTAATCGTGGCACAC TTGTGACAGTTGATGTCTGTTTCTGTTTGGCTTCAGAGTCGCGATGCCGC CGCGCAACTTCTCGGGCTGTGCCCATCGCCCCGACTTCCCTGCTGCACCT CAGCCCTGTCGTCAGGTGTGAGGGTCAGCTCCGTGCCCACTGTGCCTGTT AAATTTGTGTGCTTTTCACGCCTCATGTTAATCAGGCGAGCTGCACGCGT GAAACACTCTGTGCACGCGAAATGCTCAGGTTTATGGCGCATGTGATGGC CACCGGGCTGTCTAGCGCGCGTGTGCCCCGAGTTGATCGCATTGGCTCAG CGAAGCGACAGCTTGAGATATGATAATAACATACGCCCAGACGTGCGCTG CAGCCATGCGCAGCCAGCGCACTGCGCGCGTGGCTGCCCGCCTCGTAACG CATGCAACGCTCATCCTTCACAGGGCGAACAGCACCGTGCTTTCCTGCGC AGTCATGTGCTGCGCACACACTCATCGTACTCATGCACATGCCGGTGCAC AAACAGCACTTCTCAATGCACCACGCGCGCAGGCAGCGCATCAGAGCGCA TGCAGAGTGCCCGTTCATTTGCAGCTGGCCGCACACCAATGCGCTCCCTG CCAATTGCACCTTTTCTTTGGTGCTACATCAGAATGCAAGCTGCCGCGCT GCTGCCCTGCCTCCGAGCGTAGACCGCAGTCGGACGCTTGTGCACCCTTT CCCGCATCGCCAACCGCGCGTGCGCAGCGCCTCTCCGCGCAAAGCGCGAA ACTCTCGGCGCTACCCACACGCACAGCCACCGCCGCATACCCCGTACCCT CATACCCATACATATCTCCCGTGGTTTGCACTGTCCCCAACCGCGCAGCG ACGCCCATCGCCTACAGCGCGTGCACAGGCGGCCGCGCCGTGATCCTCGC GCGCGCGCTGCGCGGCTGCGTCGGCGCGCGCCCCGGCGACGGCAACTCGT GGCCCGCGCGACGCGACTGGTGGGTCTTCGCGGACAGCGCTCAGCTCCTG CCTGTCTACGTCGTGCACTTT
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Coding sequence (CDS) from alignment at Contig_18:622774..624044-

>mRNA_1314 ID=mRNA_1314|Name=jgi.p|Trimin1|146318|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=408bp|location=Sequence derived from alignment at Contig_18:622774..624044- (Tribonema minus UTEX_B_3156 )
CAGGTGGACGTGTACGAGAGCGAGACCACGCGCCAGCGCTACGCGGCCGC
GCGCGAGAGCCTGGCCTTTGACGGCATTGACACCACCGAGTCGTGGGTGT
TCCACGGCACGGCGCACGAGAACGTGCCCAAGATCATGTGCGCGGGGTTC
CGCGTTGGCGGCGTGGGGGAGGGCGGCGTGGCCATCAAGCACGGCGCCAC
TTTTGGCACGGGCGTGTACGCCGCCACCGGCCCAGCGACGCCCATCGCCT
ACAGCGCGTGCACAGGCGGCCGCGCCGTGATCCTCGCGCGCGCGCTGCGC
GGCTGCGTCGGCGCGCGCCCCGGCGACGGCAACTCGTGGCCCGCGCGACG
CGACTGGTGGGTCTTCGCGGACAGCGCTCAGCTCCTGCCTGTCTACGTCG
TGCACTTT
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