mRNA_13102 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|177945
Unique NamemRNA_13102
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|177945 vs. uniprot
Match: A0A835Z7B4_9STRA (EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7B4_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 7.180e-22
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 MCAGADERGTQCTKWPSFGVLGGKPTHCAAHKTPGMVDVKNKK 129
            MCAGADERGTQCTKWPSFGVLGGKPTHCAAHKTPGMVDVKNKK
Sbjct:    1 MCAGADERGTQCTKWPSFGVLGGKPTHCAAHKTPGMVDVKNKK 43
[Close]
BLAST of jgi.p|Trimin1|177945 vs. uniprot
Match: A0A835ZAZ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAZ1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.190e-12
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 1 
Query:    4 CAGADERGTQCTKWPSFGVLGGKP-THCAAHKTPGMVD 114
            CAG DE GTQCTKWPSFGVLGGK  THCAAHKTPGMVD
Sbjct:   31 CAGVDEGGTQCTKWPSFGVLGGKAATHCAAHKTPGMVD 68
[Close]
BLAST of jgi.p|Trimin1|177945 vs. uniprot
Match: A0A835ZA10_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA10_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.690e-8
Identity = 31/38 (81.58%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    7 AGADERGTQCTKWPSFGVLGGK-PTHCAAHKTPGMVDV 117
            AG DE GTQCTK P FGV GGK  THCAAHKTPGMVDV
Sbjct:   45 AGVDEGGTQCTKVPYFGVPGGKVATHCAAHKTPGMVDV 82
[Close]
BLAST of jgi.p|Trimin1|177945 vs. uniprot
Match: A0A835ZG73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG73_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 7.960e-7
Identity = 28/38 (73.68%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    4 CAGADERGTQCTKWPSFGVLGGK-PTHCAAHKTPGMVD 114
            C G DE GTQCTK P+FG+ G K  THCAAHKTPGMVD
Sbjct:   24 CVGVDEGGTQCTKRPTFGMPGVKVATHCAAHKTPGMVD 61
[Close]
BLAST of jgi.p|Trimin1|177945 vs. uniprot
Match: A0A835YHI1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI1_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.780e-6
Identity = 25/36 (69.44%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:    4 CAGADERGTQCTKWPSFGVLGGK-PTHCAAHKTPGM 108
            C G DE G QC++ P+FGV GGK PTHCAAHK+PGM
Sbjct:    9 CVGVDEGGVQCSRQPTFGVPGGKAPTHCAAHKSPGM 44
[Close]
BLAST of jgi.p|Trimin1|177945 vs. uniprot
Match: A0A836CJG9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJG9_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 4.820e-6
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:    4 CAGADERGTQCTKWPSFGVLGGKPT-HCAAHKTPGMVD 114
            CAG DE G +CT  P+FG+ GGK   HCAAHKTPGMVD
Sbjct:   24 CAGVDEGGAKCTTLPTFGMPGGKVAMHCAAHKTPGMVD 61
[Close]
BLAST of jgi.p|Trimin1|177945 vs. uniprot
Match: A0A835ZA00_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA00_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.060e-5
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 CAGADERGTQCTKWPSFGVLGGK-PTHCAAHKTPGMVDV 117
            CAG DE G +C K  +FG+ GGK  THCAAHKTP MVDV
Sbjct:   24 CAGVDEGGAKCMKQSTFGMPGGKVATHCAAHKTPAMVDV 62
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|177945 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835Z7B4_9STRA7.180e-22100.00EsV-1-7 n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
A0A835ZAZ1_9STRA1.190e-1289.47Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA10_9STRA5.690e-881.58Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZG73_9STRA7.960e-773.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YHI1_9STRA3.780e-669.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJG9_9STRA4.820e-668.42Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZA00_9STRA1.060e-566.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_161contigContig_161:54277..54945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|177945|e_gw1.161.88.1
Hectar predicted targeting categoryother localisation
TranscriptId178267
TrackFilteredModels1
ProteinId177945
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177945gene_13102Tribonema minus UTEX_B_3156 geneContig_161 54277..54945 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13102_1exon_13102_1Tribonema minus UTEX_B_3156 exonContig_161 54277..54945 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13102CDS_13102Tribonema minus UTEX_B_3156 CDSContig_161 54277..54945 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|177945Trimin1|177945|e_gw1.161.88.1Tribonema minus UTEX_B_3156 polypeptideContig_161 54277..54945 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13102 ID=mRNA_13102|Name=jgi.p|Trimin1|177945|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=669bp|location=Sequence derived from alignment at Contig_161:54277..54945- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGCCGGTGCTGACGAGAGGGGCACCCAGTGCACTAAGTGGCCAAG
CTTCGGCGTGCTCGGAGGGAAGCCCACGCACTGCGCTGCGCACAAGACGC
CGGGCATGGTCGACGTCAAAAACAAGAAATGCGCCGGTGTGGACGAGGCG
GGCGTCAAGTGCACGAGGTCCCCGAGCTTCGGCATGCTCGCAGGGAAGGC
CGCCACGCACTGCGCAGCGCACAAGACGCCGGGCATGGTTGACGTCAAAA
ACATAAAGTGCGCTGGTGTGGACGAGGGGGGCGTCCAGTGCTTGAAGCAG
CCGGTCTTCGGCATGCCCTGGGATGAGGCCGCCACGTACTGCGCCGCGCA
CAAGACGCCGGGCATGGTCGACGTCAAGCACAAGCGGTGCACCGGTGTGG
ACGAGGGGGGCGCCGAGTGCACGAAGCGGCCGAGCTTCCGCACGCCCGGG
GGTAAGGCCCCCACGCACTGCGCTGCGCACAAGACGCCGGGCATGGTCAA
TGTCGTGGACAAGAAGTGCGCCGGTGTGGACGAGGGGGGCGTCAAGTGCA
CGAGGTGGCCGAGCTTTGGCGTGCCGGGGGGTAAGGCCGCCACGCATTGC
GCCGCACACAAGACGCCGGGCATGGTCAACGTGAGATACAAGCAGCTTGC
AAGGCGTGAAGTACACTAA
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protein sequence of jgi.p|Trimin1|177945

>Trimin1|177945|e_gw1.161.88.1 ID=Trimin1|177945|e_gw1.161.88.1|Name=jgi.p|Trimin1|177945|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=223bp
MCAGADERGTQCTKWPSFGVLGGKPTHCAAHKTPGMVDVKNKKCAGVDEA
GVKCTRSPSFGMLAGKAATHCAAHKTPGMVDVKNIKCAGVDEGGVQCLKQ
PVFGMPWDEAATYCAAHKTPGMVDVKHKRCTGVDEGGAECTKRPSFRTPG
GKAPTHCAAHKTPGMVNVVDKKCAGVDEGGVKCTRWPSFGVPGGKAATHC
AAHKTPGMVNVRYKQLARREVH*
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mRNA from alignment at Contig_161:54277..54945-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13102 ID=mRNA_13102|Name=jgi.p|Trimin1|177945|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=669bp|location=Sequence derived from alignment at Contig_161:54277..54945- (Tribonema minus UTEX_B_3156 )
ATGTGCGCCGGTGCTGACGAGAGGGGCACCCAGTGCACTAAGTGGCCAAG
CTTCGGCGTGCTCGGAGGGAAGCCCACGCACTGCGCTGCGCACAAGACGC
CGGGCATGGTCGACGTCAAAAACAAGAAATGCGCCGGTGTGGACGAGGCG
GGCGTCAAGTGCACGAGGTCCCCGAGCTTCGGCATGCTCGCAGGGAAGGC
CGCCACGCACTGCGCAGCGCACAAGACGCCGGGCATGGTTGACGTCAAAA
ACATAAAGTGCGCTGGTGTGGACGAGGGGGGCGTCCAGTGCTTGAAGCAG
CCGGTCTTCGGCATGCCCTGGGATGAGGCCGCCACGTACTGCGCCGCGCA
CAAGACGCCGGGCATGGTCGACGTCAAGCACAAGCGGTGCACCGGTGTGG
ACGAGGGGGGCGCCGAGTGCACGAAGCGGCCGAGCTTCCGCACGCCCGGG
GGTAAGGCCCCCACGCACTGCGCTGCGCACAAGACGCCGGGCATGGTCAA
TGTCGTGGACAAGAAGTGCGCCGGTGTGGACGAGGGGGGCGTCAAGTGCA
CGAGGTGGCCGAGCTTTGGCGTGCCGGGGGGTAAGGCCGCCACGCATTGC
GCCGCACACAAGACGCCGGGCATGGTCAACGTGAGATACAAGCAGCTTGC
AAGGCGTGAAGTACACTAA
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Coding sequence (CDS) from alignment at Contig_161:54277..54945-

>mRNA_13102 ID=mRNA_13102|Name=jgi.p|Trimin1|177945|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=669bp|location=Sequence derived from alignment at Contig_161:54277..54945- (Tribonema minus UTEX_B_3156 )
ATGTGCGCCGGTGCTGACGAGAGGGGCACCCAGTGCACTAAGTGGCCAAG
CTTCGGCGTGCTCGGAGGGAAGCCCACGCACTGCGCTGCGCACAAGACGC
CGGGCATGGTCGACGTCAAAAACAAGAAATGCGCCGGTGTGGACGAGGCG
GGCGTCAAGTGCACGAGGTCCCCGAGCTTCGGCATGCTCGCAGGGAAGGC
CGCCACGCACTGCGCAGCGCACAAGACGCCGGGCATGGTTGACGTCAAAA
ACATAAAGTGCGCTGGTGTGGACGAGGGGGGCGTCCAGTGCTTGAAGCAG
CCGGTCTTCGGCATGCCCTGGGATGAGGCCGCCACGTACTGCGCCGCGCA
CAAGACGCCGGGCATGGTCGACGTCAAGCACAAGCGGTGCACCGGTGTGG
ACGAGGGGGGCGCCGAGTGCACGAAGCGGCCGAGCTTCCGCACGCCCGGG
GGTAAGGCCCCCACGCACTGCGCTGCGCACAAGACGCCGGGCATGGTCAA
TGTCGTGGACAAGAAGTGCGCCGGTGTGGACGAGGGGGGCGTCAAGTGCA
CGAGGTGGCCGAGCTTTGGCGTGCCGGGGGGTAAGGCCGCCACGCATTGC
GCCGCACACAAGACGCCGGGCATGGTCAACGTGAGATACAAGCAGCTTGC
AAGGCGTGAAGTACACTAA
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