mRNA_13063 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|339494
Unique NamemRNA_13063
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A835YJP7_9STRA (HIT-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJP7_9STRA)

HSP 1 Score: 350 bits (899), Expect = 1.290e-120
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1
Query:    1 MGGLRLGHVAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPEP 528
            MGGLRLGHVAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPEP
Sbjct:    1 MGGLRLGHVAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPEP 176          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: D7FWP1_ECTSI (HIT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP1_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.530e-29
Identity = 73/167 (43.71%), Postives = 95/167 (56.89%), Query Frame = 1
Query:   25 VAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPE 525
            V+KGV ++A  ++ SCLFC+FA  T  K LL+EDD  +AF PL  AA+QHILVVPK HI TV DL   D  L   M++VA   L           D    +L++H PP+NS+DHLHLHA E PF  +    ++++    WC   E V  R  A+ A A E     PE
Sbjct:   35 VSKGVVWNARGEMQSCLFCDFANHTKEKELLYEDDLVIAFSPLKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLL---------KCDASQTQLSFHIPPWNSVDHLHLHALETPFL-SWWNGLRFSEGKPWCASFEGV--RYWASGAGAQEEKESVPE 189          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: W2I1J3_PHYPR (HIT domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2I1J3_PHYPR)

HSP 1 Score: 111 bits (278), Expect = 4.670e-26
Identity = 62/160 (38.75%), Postives = 87/160 (54.37%), Query Frame = 1
Query:   31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRD---------IRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRLT 480
            KGV Y  D ++ SC FC   R T A+P L+ED+H   F PL      H+L+VP+ HI+ VN L      L AHM +VA + +TQ    +   L P           +R ++H PPFNSIDH+H+HAF + P +      +KY   + WC+ ++ V  RLT
Sbjct:   48 KGVRYHRDGQVRSCRFCEILR-TRAEPFLYEDEHVAVFRPLRPIVPSHVLIVPRAHIRNVNRLAARHRGLLAHMHRVAESVMTQGPENECVELQPEGLNVHGDENPVRYSFHVPPFNSIDHVHMHAFHDDPRSLGYYGRLKYRTESWWCRSYDQVMARLT 206          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A3F2RSW1_9STRA (HIT domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSW1_9STRA)

HSP 1 Score: 113 bits (282), Expect = 5.080e-26
Identity = 65/164 (39.63%), Postives = 88/164 (53.66%), Query Frame = 1
Query:   31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATL--------------TQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLL-SIKYAPWALWCKQHEDVERRL 477
            KGVTY  D  ++SC FC   +  D +PLL+ED+  V F PL      HILVVP+ HI+ VN L  EDA+L  HMR+VA   L               ++    A   D  D +  +H+PPFNSIDH+H+HAF     +   + SIKY     WC+  ++V  R+
Sbjct:   91 KGVTYGCDGSLVSCRFCEILQAGD-EPLLYEDEDVVVFRPLAPVVVSHILVVPRRHIRNVNKLTAEDAALLRHMREVAAFVLRELPRPPVVLASSKAEKTHDDAEMSDEDDFKFAFHSPPFNSIDHVHMHAFRTRDGRFGCVGSIKYRTETWWCRSFDEVMARV 253          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A225WA02_9STRA (HIT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA02_9STRA)

HSP 1 Score: 110 bits (275), Expect = 6.390e-26
Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1
Query:   31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRLT 480
            KGV Y  D ++ SC FC   R    +P L+ED+H V F PL      H+L+VP+ HI+ VN L      L A M +VA A +T +        +  D+R ++H PPFNSIDH+H+HAF + P +      IKY   + WC+ ++ V  RLT
Sbjct:   31 KGVRYHRDGQVRSCRFCEILRM-GTEPFLYEDEHVVVFRPLRPIVPSHVLIVPRAHIRNVNRLAARHRELLARMHRVAEAVMTAENRECELQPEAPDVRYSFHVPPFNSIDHVHMHAFHDDPRSLGYYGRIKYRTESWWCRSYDQVMARLT 180          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A2P4WW40_9STRA (HIT-like protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WW40_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.620e-25
Identity = 63/158 (39.87%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRD-------IRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRLT 480
            KGV Y  D ++ SC FC   R T A+P L+ED+H V F PL      H+L+VP+ HI+ VN L      L A M +VA A +T          DP +       IR ++H PPFNSIDH+H+HAF + P +      +KY   + WC+ ++ V  RLT
Sbjct:   44 KGVRYHRDGQVRSCRFCEILR-TGAEPFLYEDEHVVVFRPLRPIVPSHVLIVPRAHIRNVNRLAARHRELLARMHRVAEAVMT------TGPEDPEEGHGDENRIRYSFHVPPFNSIDHVHMHAFHDDPRSLGYYGRLKYRTESWWCRSYDQVMARLT 194          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: F0W4R8_9STRA (Uncharacterized protein AlNc14C18G1889 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4R8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 7.190e-25
Identity = 59/153 (38.56%), Postives = 81/153 (52.94%), Query Frame = 1
Query:   31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMP--FAKNPLLSIKYAPWALWCKQHEDVERRLTA 483
            KGVTY  D  +++C FC+         +L+ED     F PL   A  HILVVP+ HI+ V +L     SL   MR V    L+QQ   Q  + D    +  +H PPFNSIDH+H+HAF  P   + N L ++KY     WC+ +E +  +L A
Sbjct:  133 KGVTYAEDGSVVNCRFCDILLLKQKTEILYEDAFLAVFRPLTPLAATHILVVPRCHIRNVKELTIAHRSLLQRMRTVGEYVLSQQTQTQTISSDSETNKFAFHLPPFNSIDHVHMHAFRTPRNTSVNSLHALKYCTETWWCQSYEKIVHQLAA 285          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A6G0PKW5_9STRA (HIT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6G0PKW5_9STRA)

HSP 1 Score: 106 bits (265), Expect = 4.950e-24
Identity = 66/182 (36.26%), Postives = 91/182 (50.00%), Query Frame = 1
Query:   31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRD----------------IRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPE 525
            KGV Y  D ++ SC FC   R   A+P L++D+H V F PL      H+L+VP+ HI+ VN L      L A M +VA A +T     Q   L P +                +R ++H PPFNSIDH+H+HAF + P        +KY   + WC+  + V  RL     +AA+AA P  E
Sbjct:   55 KGVRYHRDGQVRSCRFCEILR-AKAEPFLYKDEHVVVFRPLRPVVPSHVLIVPRAHIRNVNRLAARHRELLARMHRVAEAVMTTGPLEQCEELQPEELEAAHGAAAAEDDENPVRYSFHVPPFNSIDHVHMHAFHDDPRRLGYYGRLKYRTESWWCRSFDQVMARLEE---LAADAAGPVDE 232          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: G4YNX0_PHYSP (HIT domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YNX0_PHYSP)

HSP 1 Score: 102 bits (254), Expect = 1.390e-23
Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 1
Query:   52 DNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRL 477
            D ++ SC FC   R T A+P L+ED+H V F PL      H+L+VP+ HI+ VN L      L A M +VA A +   A       D   +R ++H PPFNSIDH+H+HAF + P        IKY   + WC+ ++ V  RL
Sbjct:    2 DGQVRSCRFCEILR-TKAEPFLYEDEHVVVFRPLRPIVPSHVLIVPRAHIRNVNRLAARHRGLLARMHRVAEAVM---AKGSLEEYDENPVRYSFHVPPFNSIDHVHMHAFYDDPRRLGYYGRIKYRTESWWCRSYDQVMARL 140          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: M4BE89_HYAAE (HIT domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BE89_HYAAE)

HSP 1 Score: 105 bits (261), Expect = 1.420e-23
Identity = 60/162 (37.04%), Postives = 89/162 (54.94%), Query Frame = 1
Query:   31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQ----QAAAQARTLDPRDIR--------LTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRL 477
            KGV Y  D ++ SC FC   R T A+P L++D+H V F PL      H+L+VP+ HI+ VN L  +   L A M  VA   +T+    +  A+   L P++++         T+H PPFNSIDH+H+HAF + P +      +KY   + WC+ ++ V  RL
Sbjct:   45 KGVCYHRDGQVHSCRFCEILRTT-AEPFLYQDEHVVVFRPLRPIVPSHVLIVPRAHIRNVNRLAAKHRGLLARMHHVAKTFMTRGSETKTEAECVGLQPQELKDFHGHRVHYTFHVPPFNSIDHVHMHAFLDDPCSLGCYGRLKYRTTSWWCRSYDQVMARL 205          
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A835YH48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH48_9STRA)

HSP 1 Score: 1628 bits (4217), Expect = 0.000e+0
Identity = 940/940 (100.00%), Postives = 940/940 (100.00%), Query Frame = 1
Query:    1 MRGRQVRATVVAVALVVLCSWTDAKHHEGWPFNYRVQPFFVTDAALCARSGADALSGSCFLLTRANPAPDARYNTLGDLLTLTASRAFLSASRRETVTVTLAFTNGPQVCSGDTIAAVGSNGSGAAAAAWLALVDAFQRAAASQQRGAAAVVRWVLSGDALPQRCLAERWRPWPAAFTTAACPRDALTSDRRPLDRFQMLSDPPDDSLWETLASAGVDYGKFARKDFPYVLRGGGAPLEQGTVRRYLDLYEGGRGHREGFQFSTDADPAMLEVFAGRQRAFSGAAPPSGTNPRRRGISAALPAPALPRGNASXXXXXXXXXXXGDEEAWRFPQLVAVAGSDDGPVTLLSIATNGTAVVAQHVELAAATDSAEAGVRLAGVTALNATVRFAALGXXXXXXXXXXLSASAARTVPAARHRPYWHKATLLLSNATGAYHLYNVTAARDGGAAAVALAPWVADGALPRPLNSAAPSLATHLFAAPRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADALCHPRVQLLRVGGGGALSPLGLVCLSLPERAAAAAPPAVDSGSVAVARLGRALYLFVTASAEGNLYAGATALEQSMWEEDGXXXXXXSGGEPWGGGRGVGGVRAVALKWVGAGGRPHVSVQDAQALRGGDDAAVTSDVVLLLSDNGYCFDLSRARAAKGCAAIPSPTPHALDYAVATIAAWLEWLAAPPSGALSPCDARVYRGTYDRGDAPSGALFAARGRRLALAAAHAAAPRARYRADAAACGASAHERGLVLAAFPLPPALTDGSDRAAADGYDDVTDGGSHARWSSNNGAVAGVVLAAVAAALGLGGCARCLWRXXXXXXXXXXACARTHRGRQRLDTDDGGDGGATGRVYHVQNGAAVRGGFAPLRSPRRRVGSPDGXXXXXXXXXXXXAEGVELQAMGQAELLADSGEGDASTAALV 2820
            MRGRQVRATVVAVALVVLCSWTDAKHHEGWPFNYRVQPFFVTDAALCARSGADALSGSCFLLTRANPAPDARYNTLGDLLTLTASRAFLSASRRETVTVTLAFTNGPQVCSGDTIAAVGSNGSGAAAAAWLALVDAFQRAAASQQRGAAAVVRWVLSGDALPQRCLAERWRPWPAAFTTAACPRDALTSDRRPLDRFQMLSDPPDDSLWETLASAGVDYGKFARKDFPYVLRGGGAPLEQGTVRRYLDLYEGGRGHREGFQFSTDADPAMLEVFAGRQRAFSGAAPPSGTNPRRRGISAALPAPALPRGNASXXXXXXXXXXXGDEEAWRFPQLVAVAGSDDGPVTLLSIATNGTAVVAQHVELAAATDSAEAGVRLAGVTALNATVRFAALGXXXXXXXXXXLSASAARTVPAARHRPYWHKATLLLSNATGAYHLYNVTAARDGGAAAVALAPWVADGALPRPLNSAAPSLATHLFAAPRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADALCHPRVQLLRVGGGGALSPLGLVCLSLPERAAAAAPPAVDSGSVAVARLGRALYLFVTASAEGNLYAGATALEQSMWEEDGXXXXXXSGGEPWGGGRGVGGVRAVALKWVGAGGRPHVSVQDAQALRGGDDAAVTSDVVLLLSDNGYCFDLSRARAAKGCAAIPSPTPHALDYAVATIAAWLEWLAAPPSGALSPCDARVYRGTYDRGDAPSGALFAARGRRLALAAAHAAAPRARYRADAAACGASAHERGLVLAAFPLPPALTDGSDRAAADGYDDVTDGGSHARWSSNNGAVAGVVLAAVAAALGLGGCARCLWRXXXXXXXXXXACARTHRGRQRLDTDDGGDGGATGRVYHVQNGAAVRGGFAPLRSPRRRVGSPDGXXXXXXXXXXXXAEGVELQAMGQAELLADSGEGDASTAALV
Sbjct:    1 MRGRQVRATVVAVALVVLCSWTDAKHHEGWPFNYRVQPFFVTDAALCARSGADALSGSCFLLTRANPAPDARYNTLGDLLTLTASRAFLSASRRETVTVTLAFTNGPQVCSGDTIAAVGSNGSGAAAAAWLALVDAFQRAAASQQRGAAAVVRWVLSGDALPQRCLAERWRPWPAAFTTAACPRDALTSDRRPLDRFQMLSDPPDDSLWETLASAGVDYGKFARKDFPYVLRGGGAPLEQGTVRRYLDLYEGGRGHREGFQFSTDADPAMLEVFAGRQRAFSGAAPPSGTNPRRRGISAALPAPALPRGNASXXXXXXXXXXXGDEEAWRFPQLVAVAGSDDGPVTLLSIATNGTAVVAQHVELAAATDSAEAGVRLAGVTALNATVRFAALGXXXXXXXXXXLSASAARTVPAARHRPYWHKATLLLSNATGAYHLYNVTAARDGGAAAVALAPWVADGALPRPLNSAAPSLATHLFAAPRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADALCHPRVQLLRVGGGGALSPLGLVCLSLPERAAAAAPPAVDSGSVAVARLGRALYLFVTASAEGNLYAGATALEQSMWEEDGXXXXXXSGGEPWGGGRGVGGVRAVALKWVGAGGRPHVSVQDAQALRGGDDAAVTSDVVLLLSDNGYCFDLSRARAAKGCAAIPSPTPHALDYAVATIAAWLEWLAAPPSGALSPCDARVYRGTYDRGDAPSGALFAARGRRLALAAAHAAAPRARYRADAAACGASAHERGLVLAAFPLPPALTDGSDRAAADGYDDVTDGGSHARWSSNNGAVAGVVLAAVAAALGLGGCARCLWRXXXXXXXXXXACARTHRGRQRLDTDDGGDGGATGRVYHVQNGAAVRGGFAPLRSPRRRVGSPDGXXXXXXXXXXXXAEGVELQAMGQAELLADSGEGDASTAALV 940          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJP7_9STRA1.290e-120100.00HIT-like domain-containing protein n=1 Tax=Tribone... [more]
D7FWP1_ECTSI5.530e-2943.71HIT domain-containing protein n=2 Tax=Ectocarpus T... [more]
W2I1J3_PHYPR4.670e-2638.75HIT domain-containing protein n=12 Tax=Phytophthor... [more]
A0A3F2RSW1_9STRA5.080e-2639.63HIT domain-containing protein n=1 Tax=Phytophthora... [more]
A0A225WA02_9STRA6.390e-2639.74HIT domain-containing protein n=1 Tax=Phytophthora... [more]
A0A2P4WW40_9STRA5.620e-2539.87HIT-like protein n=2 Tax=Phytophthora palmivora va... [more]
F0W4R8_9STRA7.190e-2538.56Uncharacterized protein AlNc14C18G1889 n=1 Tax=Alb... [more]
A0A6G0PKW5_9STRA4.950e-2436.26HIT domain-containing protein n=3 Tax=Phytophthora... [more]
G4YNX0_PHYSP1.390e-2339.86HIT domain-containing protein (Fragment) n=1 Tax=P... [more]
M4BE89_HYAAE1.420e-2337.04HIT domain-containing protein n=1 Tax=Hyaloperonos... [more]

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BLAST of jgi.p|Trimin1|339494 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YH48_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:357443..358513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|339494|MIX48257_6_43
Descriptionnucleoside phosphate binding
COG categoryFG
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0537@1|root,KOG4359@2759|Eukaryota
Evalue8.46e-31
Seed ortholog2880.D7FWP1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHistidine triad (HIT) protein
Ec32 orthologEc-06_001390.1
TranscriptId339816
TrackFilteredModels1
ProteinId339494
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339494gene_13063Tribonema minus UTEX_B_3156 geneContig_96 357443..358513 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13063_1exon_13063_1Tribonema minus UTEX_B_3156 exonContig_96 357443..357649 +
exon_13063_2exon_13063_2Tribonema minus UTEX_B_3156 exonContig_96 357912..358513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13063CDS_13063Tribonema minus UTEX_B_3156 CDSContig_96 357443..357649 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13063UTR3_13063Tribonema minus UTEX_B_3156 three_prime_UTRContig_96 358236..358513 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339494Trimin1|339494|MIX48257_6_43Tribonema minus UTEX_B_3156 polypeptideContig_96 357443..358235 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13063 ID=mRNA_13063|Name=jgi.p|Trimin1|339494|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=809bp|location=Sequence derived from alignment at Contig_96:357443..358513+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGGACTCCGTCTGGGCCATGTCGCCAAGGGCGTGACTTATGACGC
CGACAACAAGATCATAAGTTGCCTGTTTTGCAACTTCGCAAGGCGGACCG
ATGCCAAGCCACTACTGTTCGAGGACGATCATTGCGTGGCTTTTCTACCA
CTGGATATTGCGGCTGAACAACACATCCTCGTCGTACCCAAGACACACAT
CAAAACGGTTAATGATTTACGGACAGAGGACGCGTCTCTAGCAGCTCACA
TGCGCCAGGTCGCGACGGCAACGCTCACGCAGCAGGCTGCGGCACAGGCG
CGCACACTCGACCCACGCGACATCCGACTCACGTACCACGCCCCGCCGTT
CAACTCCATAGATCACCTTCACCTGCACGCTTTCGAGATGCCGTTCGCCA
AGAACCCGCTGCTGTCCATCAAGTACGCACCGTGGGCGCTATGGTGCAAG
CAGCACGAGGACGTAGAGCGGCGGCTCACTGCAGCGGCTGCGGTGGCGGC
GGAAGCGGCGGCGCCATTCCCGGAGCCTTGATTGCGCACGCGGCGCGGCG
CAAGTGCAAAGGCAACTTTGAAGTTGCTGCGGTAGCAGGGATGGCAGGAG
CGTGGAGCTCTGTGCCGGAGTCACAATGGTGGCGGTGCACGCGTTTGGGG
CAGCAGCATGTCACTGCGGTCTGTCACAGGTGCCGTGCGCCGCCAACGCC
GCTGCGGCGCCATGGACGCTCAGCTGAGCACTGCTGCTTGATGTGTGGAG
CTGCTCAAGCGTTGCTGAAGGGCAGCAGCAGCTGTCATGCATTGTGGTGC
CAAATTCCA
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protein sequence of jgi.p|Trimin1|339494

>Trimin1|339494|MIX48257_6_43 ID=Trimin1|339494|MIX48257_6_43|Name=jgi.p|Trimin1|339494|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp
MGGLRLGHVAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLP
LDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQA
RTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLLSIKYAPWALWCK
QHEDVERRLTAAAAVAAEAAAPFPEP*
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mRNA from alignment at Contig_96:357443..358513+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13063 ID=mRNA_13063|Name=jgi.p|Trimin1|339494|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1071bp|location=Sequence derived from alignment at Contig_96:357443..358513+ (Tribonema minus UTEX_B_3156 )
ATGGGCGGACTCCGTCTGGGCCATGTCGCCAAGGGCGTGACTTATGACGC CGACAACAAGATCATAAGTTGCCTGTTTTGCAACTTCGCAAGGCGGACCG ATGCCAAGCCACTACTGTTCGAGGACGATCATTGCGTGGCTTTTCTACCA CTGGATATTGCGGCTGAACAACACATCCTCGTCGTACCCAAGACACACAT CAAAACGGTGAGGGAGGCTGCGGGTGCTCAATTGTCACAGTTTGTGACAA TGATGATGCTTGGCTTCTGTATGTATCTGTTTGACAAGCCAAGCCCGCAA GGTGCTGTACGCAAAGTTGTTCTAATTCCTGTGCACCACGCCTTCTCTGC GCAGGCACTCAGTGTTTGCCGCATCATATATTACGCCTGTGACCTTCACA AAGTCCAAACGCCCAAAGCAGTACCTCAAGTATGCTTCTTTTGCCATGCT GCCTGTATCCGTGCCACAGGTTAATGATTTACGGACAGAGGACGCGTCTC TAGCAGCTCACATGCGCCAGGTCGCGACGGCAACGCTCACGCAGCAGGCT GCGGCACAGGCGCGCACACTCGACCCACGCGACATCCGACTCACGTACCA CGCCCCGCCGTTCAACTCCATAGATCACCTTCACCTGCACGCTTTCGAGA TGCCGTTCGCCAAGAACCCGCTGCTGTCCATCAAGTACGCACCGTGGGCG CTATGGTGCAAGCAGCACGAGGACGTAGAGCGGCGGCTCACTGCAGCGGC TGCGGTGGCGGCGGAAGCGGCGGCGCCATTCCCGGAGCCTTGATTGCGCA CGCGGCGCGGCGCAAGTGCAAAGGCAACTTTGAAGTTGCTGCGGTAGCAG GGATGGCAGGAGCGTGGAGCTCTGTGCCGGAGTCACAATGGTGGCGGTGC ACGCGTTTGGGGCAGCAGCATGTCACTGCGGTCTGTCACAGGTGCCGTGC GCCGCCAACGCCGCTGCGGCGCCATGGACGCTCAGCTGAGCACTGCTGCT TGATGTGTGGAGCTGCTCAAGCGTTGCTGAAGGGCAGCAGCAGCTGTCAT GCATTGTGGTGCCAAATTCCA
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Coding sequence (CDS) from alignment at Contig_96:357443..358513+

>mRNA_13063 ID=mRNA_13063|Name=jgi.p|Trimin1|339494|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_96:357443..358513+ (Tribonema minus UTEX_B_3156 )
ATGGGCGGACTCCGTCTGGGCCATGTCGCCAAGGGCGTGACTTATGACGC
CGACAACAAGATCATAAGTTGCCTGTTTTGCAACTTCGCAAGGCGGACCG
ATGCCAAGCCACTACTGTTCGAGGACGATCATTGCGTGGCTTTTCTACCA
CTGGATATTGCGGCTGAACAACACATCCTCGTCGTACCCAAGACACACAT
CAAAACGGTTAATGATTTACGGACAGAGGACGCGTCTCTAGCAGCTCACA
TGCGCCAGGTCGCGACGGCAACGCTCACGCAGCAGGCTGCGGCACAGGCG
CGCACACTCGACCCACGCGACATCCGACTCACGTACCACGCCCCGCCGTT
CAACTCCATAGATCACCTTCACCTGCACGCTTTCGAGATGCCGTTCGCCA
AGAACCCGCTGCTGTCCATCAAGTACGCACCGTGGGCGCTATGGTGCAAG
CAGCACGAGGACGTAGAGCGGCGGCTCACTGCAGCGGCTGCGGTGGCGGC
GGAAGCGGCGGCGCCATTCCCGGAGCCTTGA
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