mRNA_13063 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A835YJP7_9STRA (HIT-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJP7_9STRA) HSP 1 Score: 350 bits (899), Expect = 1.290e-120 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 1 Query: 1 MGGLRLGHVAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPEP 528 MGGLRLGHVAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPEP Sbjct: 1 MGGLRLGHVAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPEP 176
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: D7FWP1_ECTSI (HIT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWP1_ECTSI) HSP 1 Score: 118 bits (295), Expect = 5.530e-29 Identity = 73/167 (43.71%), Postives = 95/167 (56.89%), Query Frame = 1 Query: 25 VAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPE 525 V+KGV ++A ++ SCLFC+FA T K LL+EDD +AF PL AA+QHILVVPK HI TV DL D L M++VA L D +L++H PP+NS+DHLHLHA E PF + ++++ WC E V R A+ A A E PE Sbjct: 35 VSKGVVWNARGEMQSCLFCDFANHTKEKELLYEDDLVIAFSPLKPAAKQHILVVPKRHISTVGDLVETDTPLLDRMKEVAVKLL---------KCDASQTQLSFHIPPWNSVDHLHLHALETPFL-SWWNGLRFSEGKPWCASFEGV--RYWASGAGAQEEKESVPE 189
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: W2I1J3_PHYPR (HIT domain-containing protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2I1J3_PHYPR) HSP 1 Score: 111 bits (278), Expect = 4.670e-26 Identity = 62/160 (38.75%), Postives = 87/160 (54.37%), Query Frame = 1 Query: 31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRD---------IRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRLT 480 KGV Y D ++ SC FC R T A+P L+ED+H F PL H+L+VP+ HI+ VN L L AHM +VA + +TQ + L P +R ++H PPFNSIDH+H+HAF + P + +KY + WC+ ++ V RLT Sbjct: 48 KGVRYHRDGQVRSCRFCEILR-TRAEPFLYEDEHVAVFRPLRPIVPSHVLIVPRAHIRNVNRLAARHRGLLAHMHRVAESVMTQGPENECVELQPEGLNVHGDENPVRYSFHVPPFNSIDHVHMHAFHDDPRSLGYYGRLKYRTESWWCRSYDQVMARLT 206
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A3F2RSW1_9STRA (HIT domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RSW1_9STRA) HSP 1 Score: 113 bits (282), Expect = 5.080e-26 Identity = 65/164 (39.63%), Postives = 88/164 (53.66%), Query Frame = 1 Query: 31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATL--------------TQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMPFAKNPLL-SIKYAPWALWCKQHEDVERRL 477 KGVTY D ++SC FC + D +PLL+ED+ V F PL HILVVP+ HI+ VN L EDA+L HMR+VA L ++ A D D + +H+PPFNSIDH+H+HAF + + SIKY WC+ ++V R+ Sbjct: 91 KGVTYGCDGSLVSCRFCEILQAGD-EPLLYEDEDVVVFRPLAPVVVSHILVVPRRHIRNVNKLTAEDAALLRHMREVAAFVLRELPRPPVVLASSKAEKTHDDAEMSDEDDFKFAFHSPPFNSIDHVHMHAFRTRDGRFGCVGSIKYRTETWWCRSFDEVMARV 253
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A225WA02_9STRA (HIT domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WA02_9STRA) HSP 1 Score: 110 bits (275), Expect = 6.390e-26 Identity = 60/151 (39.74%), Postives = 84/151 (55.63%), Query Frame = 1 Query: 31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRLT 480 KGV Y D ++ SC FC R +P L+ED+H V F PL H+L+VP+ HI+ VN L L A M +VA A +T + + D+R ++H PPFNSIDH+H+HAF + P + IKY + WC+ ++ V RLT Sbjct: 31 KGVRYHRDGQVRSCRFCEILRM-GTEPFLYEDEHVVVFRPLRPIVPSHVLIVPRAHIRNVNRLAARHRELLARMHRVAEAVMTAENRECELQPEAPDVRYSFHVPPFNSIDHVHMHAFHDDPRSLGYYGRIKYRTESWWCRSYDQVMARLT 180
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A2P4WW40_9STRA (HIT-like protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WW40_9STRA) HSP 1 Score: 108 bits (270), Expect = 5.620e-25 Identity = 63/158 (39.87%), Postives = 86/158 (54.43%), Query Frame = 1 Query: 31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRD-------IRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRLT 480 KGV Y D ++ SC FC R T A+P L+ED+H V F PL H+L+VP+ HI+ VN L L A M +VA A +T DP + IR ++H PPFNSIDH+H+HAF + P + +KY + WC+ ++ V RLT Sbjct: 44 KGVRYHRDGQVRSCRFCEILR-TGAEPFLYEDEHVVVFRPLRPIVPSHVLIVPRAHIRNVNRLAARHRELLARMHRVAEAVMT------TGPEDPEEGHGDENRIRYSFHVPPFNSIDHVHMHAFHDDPRSLGYYGRLKYRTESWWCRSYDQVMARLT 194
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: F0W4R8_9STRA (Uncharacterized protein AlNc14C18G1889 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4R8_9STRA) HSP 1 Score: 109 bits (273), Expect = 7.190e-25 Identity = 59/153 (38.56%), Postives = 81/153 (52.94%), Query Frame = 1 Query: 31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAFEMP--FAKNPLLSIKYAPWALWCKQHEDVERRLTA 483 KGVTY D +++C FC+ +L+ED F PL A HILVVP+ HI+ V +L SL MR V L+QQ Q + D + +H PPFNSIDH+H+HAF P + N L ++KY WC+ +E + +L A Sbjct: 133 KGVTYAEDGSVVNCRFCDILLLKQKTEILYEDAFLAVFRPLTPLAATHILVVPRCHIRNVKELTIAHRSLLQRMRTVGEYVLSQQTQTQTISSDSETNKFAFHLPPFNSIDHVHMHAFRTPRNTSVNSLHALKYCTETWWCQSYEKIVHQLAA 285
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A6G0PKW5_9STRA (HIT domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6G0PKW5_9STRA) HSP 1 Score: 106 bits (265), Expect = 4.950e-24 Identity = 66/182 (36.26%), Postives = 91/182 (50.00%), Query Frame = 1 Query: 31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRD----------------IRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRLTAAAAVAAEAAAPFPE 525 KGV Y D ++ SC FC R A+P L++D+H V F PL H+L+VP+ HI+ VN L L A M +VA A +T Q L P + +R ++H PPFNSIDH+H+HAF + P +KY + WC+ + V RL +AA+AA P E Sbjct: 55 KGVRYHRDGQVRSCRFCEILR-AKAEPFLYKDEHVVVFRPLRPVVPSHVLIVPRAHIRNVNRLAARHRELLARMHRVAEAVMTTGPLEQCEELQPEELEAAHGAAAAEDDENPVRYSFHVPPFNSIDHVHMHAFHDDPRRLGYYGRLKYRTESWWCRSFDQVMARLEE---LAADAAGPVDE 232
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: G4YNX0_PHYSP (HIT domain-containing protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YNX0_PHYSP) HSP 1 Score: 102 bits (254), Expect = 1.390e-23 Identity = 57/143 (39.86%), Postives = 78/143 (54.55%), Query Frame = 1 Query: 52 DNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQQAAAQARTLDPRDIRLTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRL 477 D ++ SC FC R T A+P L+ED+H V F PL H+L+VP+ HI+ VN L L A M +VA A + A D +R ++H PPFNSIDH+H+HAF + P IKY + WC+ ++ V RL Sbjct: 2 DGQVRSCRFCEILR-TKAEPFLYEDEHVVVFRPLRPIVPSHVLIVPRAHIRNVNRLAARHRGLLARMHRVAEAVM---AKGSLEEYDENPVRYSFHVPPFNSIDHVHMHAFYDDPRRLGYYGRIKYRTESWWCRSYDQVMARL 140
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: M4BE89_HYAAE (HIT domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BE89_HYAAE) HSP 1 Score: 105 bits (261), Expect = 1.420e-23 Identity = 60/162 (37.04%), Postives = 89/162 (54.94%), Query Frame = 1 Query: 31 KGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPLDIAAEQHILVVPKTHIKTVNDLRTEDASLAAHMRQVATATLTQ----QAAAQARTLDPRDIR--------LTYHAPPFNSIDHLHLHAF-EMPFAKNPLLSIKYAPWALWCKQHEDVERRL 477 KGV Y D ++ SC FC R T A+P L++D+H V F PL H+L+VP+ HI+ VN L + L A M VA +T+ + A+ L P++++ T+H PPFNSIDH+H+HAF + P + +KY + WC+ ++ V RL Sbjct: 45 KGVCYHRDGQVHSCRFCEILRTT-AEPFLYQDEHVVVFRPLRPIVPSHVLIVPRAHIRNVNRLAAKHRGLLARMHHVAKTFMTRGSETKTEAECVGLQPQELKDFHGHRVHYTFHVPPFNSIDHVHMHAFLDDPCSLGCYGRLKYRTTSWWCRSYDQVMARL 205
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Match: A0A835YH48_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH48_9STRA) HSP 1 Score: 1628 bits (4217), Expect = 0.000e+0 Identity = 940/940 (100.00%), Postives = 940/940 (100.00%), Query Frame = 1 Query: 1 MRGRQVRATVVAVALVVLCSWTDAKHHEGWPFNYRVQPFFVTDAALCARSGADALSGSCFLLTRANPAPDARYNTLGDLLTLTASRAFLSASRRETVTVTLAFTNGPQVCSGDTIAAVGSNGSGAAAAAWLALVDAFQRAAASQQRGAAAVVRWVLSGDALPQRCLAERWRPWPAAFTTAACPRDALTSDRRPLDRFQMLSDPPDDSLWETLASAGVDYGKFARKDFPYVLRGGGAPLEQGTVRRYLDLYEGGRGHREGFQFSTDADPAMLEVFAGRQRAFSGAAPPSGTNPRRRGISAALPAPALPRGNASXXXXXXXXXXXGDEEAWRFPQLVAVAGSDDGPVTLLSIATNGTAVVAQHVELAAATDSAEAGVRLAGVTALNATVRFAALGXXXXXXXXXXLSASAARTVPAARHRPYWHKATLLLSNATGAYHLYNVTAARDGGAAAVALAPWVADGALPRPLNSAAPSLATHLFAAPRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADALCHPRVQLLRVGGGGALSPLGLVCLSLPERAAAAAPPAVDSGSVAVARLGRALYLFVTASAEGNLYAGATALEQSMWEEDGXXXXXXSGGEPWGGGRGVGGVRAVALKWVGAGGRPHVSVQDAQALRGGDDAAVTSDVVLLLSDNGYCFDLSRARAAKGCAAIPSPTPHALDYAVATIAAWLEWLAAPPSGALSPCDARVYRGTYDRGDAPSGALFAARGRRLALAAAHAAAPRARYRADAAACGASAHERGLVLAAFPLPPALTDGSDRAAADGYDDVTDGGSHARWSSNNGAVAGVVLAAVAAALGLGGCARCLWRXXXXXXXXXXACARTHRGRQRLDTDDGGDGGATGRVYHVQNGAAVRGGFAPLRSPRRRVGSPDGXXXXXXXXXXXXAEGVELQAMGQAELLADSGEGDASTAALV 2820 MRGRQVRATVVAVALVVLCSWTDAKHHEGWPFNYRVQPFFVTDAALCARSGADALSGSCFLLTRANPAPDARYNTLGDLLTLTASRAFLSASRRETVTVTLAFTNGPQVCSGDTIAAVGSNGSGAAAAAWLALVDAFQRAAASQQRGAAAVVRWVLSGDALPQRCLAERWRPWPAAFTTAACPRDALTSDRRPLDRFQMLSDPPDDSLWETLASAGVDYGKFARKDFPYVLRGGGAPLEQGTVRRYLDLYEGGRGHREGFQFSTDADPAMLEVFAGRQRAFSGAAPPSGTNPRRRGISAALPAPALPRGNASXXXXXXXXXXXGDEEAWRFPQLVAVAGSDDGPVTLLSIATNGTAVVAQHVELAAATDSAEAGVRLAGVTALNATVRFAALGXXXXXXXXXXLSASAARTVPAARHRPYWHKATLLLSNATGAYHLYNVTAARDGGAAAVALAPWVADGALPRPLNSAAPSLATHLFAAPRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADALCHPRVQLLRVGGGGALSPLGLVCLSLPERAAAAAPPAVDSGSVAVARLGRALYLFVTASAEGNLYAGATALEQSMWEEDGXXXXXXSGGEPWGGGRGVGGVRAVALKWVGAGGRPHVSVQDAQALRGGDDAAVTSDVVLLLSDNGYCFDLSRARAAKGCAAIPSPTPHALDYAVATIAAWLEWLAAPPSGALSPCDARVYRGTYDRGDAPSGALFAARGRRLALAAAHAAAPRARYRADAAACGASAHERGLVLAAFPLPPALTDGSDRAAADGYDDVTDGGSHARWSSNNGAVAGVVLAAVAAALGLGGCARCLWRXXXXXXXXXXACARTHRGRQRLDTDDGGDGGATGRVYHVQNGAAVRGGFAPLRSPRRRVGSPDGXXXXXXXXXXXXAEGVELQAMGQAELLADSGEGDASTAALV Sbjct: 1 MRGRQVRATVVAVALVVLCSWTDAKHHEGWPFNYRVQPFFVTDAALCARSGADALSGSCFLLTRANPAPDARYNTLGDLLTLTASRAFLSASRRETVTVTLAFTNGPQVCSGDTIAAVGSNGSGAAAAAWLALVDAFQRAAASQQRGAAAVVRWVLSGDALPQRCLAERWRPWPAAFTTAACPRDALTSDRRPLDRFQMLSDPPDDSLWETLASAGVDYGKFARKDFPYVLRGGGAPLEQGTVRRYLDLYEGGRGHREGFQFSTDADPAMLEVFAGRQRAFSGAAPPSGTNPRRRGISAALPAPALPRGNASXXXXXXXXXXXGDEEAWRFPQLVAVAGSDDGPVTLLSIATNGTAVVAQHVELAAATDSAEAGVRLAGVTALNATVRFAALGXXXXXXXXXXLSASAARTVPAARHRPYWHKATLLLSNATGAYHLYNVTAARDGGAAAVALAPWVADGALPRPLNSAAPSLATHLFAAPRRAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADALCHPRVQLLRVGGGGALSPLGLVCLSLPERAAAAAPPAVDSGSVAVARLGRALYLFVTASAEGNLYAGATALEQSMWEEDGXXXXXXSGGEPWGGGRGVGGVRAVALKWVGAGGRPHVSVQDAQALRGGDDAAVTSDVVLLLSDNGYCFDLSRARAAKGCAAIPSPTPHALDYAVATIAAWLEWLAAPPSGALSPCDARVYRGTYDRGDAPSGALFAARGRRLALAAAHAAAPRARYRADAAACGASAHERGLVLAAFPLPPALTDGSDRAAADGYDDVTDGGSHARWSSNNGAVAGVVLAAVAAALGLGGCARCLWRXXXXXXXXXXACARTHRGRQRLDTDDGGDGGATGRVYHVQNGAAVRGGFAPLRSPRRRVGSPDGXXXXXXXXXXXXAEGVELQAMGQAELLADSGEGDASTAALV 940 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339494 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|339494 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13063 ID=mRNA_13063|Name=jgi.p|Trimin1|339494|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=809bp|location=Sequence derived from alignment at Contig_96:357443..358513+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGCGGACTCCGTCTGGGCCATGTCGCCAAGGGCGTGACTTATGACGCback to top protein sequence of jgi.p|Trimin1|339494 >Trimin1|339494|MIX48257_6_43 ID=Trimin1|339494|MIX48257_6_43|Name=jgi.p|Trimin1|339494|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=177bp MGGLRLGHVAKGVTYDADNKIISCLFCNFARRTDAKPLLFEDDHCVAFLPback to top mRNA from alignment at Contig_96:357443..358513+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13063 ID=mRNA_13063|Name=jgi.p|Trimin1|339494|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1071bp|location=Sequence derived from alignment at Contig_96:357443..358513+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_96:357443..358513+ >mRNA_13063 ID=mRNA_13063|Name=jgi.p|Trimin1|339494|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=531bp|location=Sequence derived from alignment at Contig_96:357443..358513+ (Tribonema minus UTEX_B_3156 )back to top |