mRNA_13039 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|339455
Unique NamemRNA_13039
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: A0A835YII1_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YII1_9STRA)

HSP 1 Score: 546 bits (1406), Expect = 7.030e-194
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 2 
Query:   29 MTESQAMNQAGRRQLLQAAAAAVISGTLAAASTTAEAFCGEPYPVWAYNLDFEEGLVPFEADGFKGQLFSKRFPLVLVPSAGLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPTAAPALERQLQAVLQFLELKSYHLLGHGTGAXXXXXXXXXXXXXXXXXALSVTLASPLLRGTPDGYAAALLSAFDGRAVPVCLAEAVKEDAAAADAQXXXXXXXXAGGVWEVSTDVEVYKAGGRFKVEVEVCLXXXXXXXXXXXXXXXXXXXXRVGVLYGANDPYVSKSDAQQIRDAAEGALAVAMPSAGHLAHLERREEYLGELLPFLQAADAVNAQAAR 1048
            MTESQAMNQAGRRQLLQAAAAAVISGTLAAASTTAEAFCGEPYPVWAYNLDFEEGLVPFEADGFKGQLFSKRFPLVLVPSAGLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPTAAPALERQLQAVLQFLELKSYHLLGHGTGAXXXXXXXXXXXXXXXXXALSVTLASPLLRGTPDGYAAALLSAFDGRAVPVCLAEAVKEDAAAADAQXXXXXXXXAGGVWEVSTDVEVYKAGGRFKVEVEVCLXXXXXXXXXXXXXXXXXXXXRVGVLYGANDPYVSKSDAQQIRDAAEGALAVAMPSAGHLAHLERREEYLGELLPFLQAADAVNAQAAR
Sbjct:    1 MTESQAMNQAGRRQLLQAAAAAVISGTLAAASTTAEAFCGEPYPVWAYNLDFEEGLVPFEADGFKGQLFSKRFPLVLVPSAGLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPTAAPALERQLQAVLQFLELKSYHLLGHGTGAXXXXXXXXXXXXXXXXXALSVTLASPLLRGTPDGYAAALLSAFDGRAVPVCLAEAVKEDAAAADAQXXXXXXXXAGGVWEVSTDVEVYKAGGRFKVEVEVCLXXXXXXXXXXXXXXXXXXXXRVGVLYGANDPYVSKSDAQQIRDAAEGALAVAMPSAGHLAHLERREEYLGELLPFLQAADAVNAQAAR 340
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: A0A7S3XPS5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPS5_HETAK)

HSP 1 Score: 107 bits (266), Expect = 2.110e-22
Identity = 68/154 (44.16%), Postives = 89/154 (57.79%), Query Frame = 2 
Query:   59 GRRQLLQAAAAAVISGTLAAASTT---AEAFCGEPYPVWAYNLDFEEGLVPFEADGFKGQLFS--------KRFPLVLVPSA-GLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPTAAPA-----LERQLQAVLQFLELKSYHLLGHG 469
            GRR+LL     A+  G +AAA      A A+CG+PYP WAY L+F +G++P++      ++          KR PL+++P   GL+H YLETLEA +   RRVVL+DP+GTG S   P PP AA A     L  QL  V+  L LK YHL  HG
Sbjct:   52 GRRELL-----ALGGGLVAAAGMNNRPAGAWCGDPYPAWAYTLNFNDGVIPYQGSQLYIRVVGDEYYEKRVKRKPLIVLPGGPGLSHDYLETLEAVSQTQRRVVLFDPLGTGQSG--PRPPAAASAGSPRSLLDQLNRVISELGLKEYHLFAHG 198
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: D8LLW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLW3_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.230e-19
Identity = 68/190 (35.79%), Postives = 101/190 (53.16%), Query Frame = 2 
Query:  176 LDFEEGLVPFEADGFKGQLFSKRF------------PLVLVPSA-GLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPTAAPA--------LERQLQAVLQFLELKSYHLLGHGTGAXXXXXXXXXXXXXXXXX-------ALSVTLASPLLRG---TPDGYAAALLSAF--DGRAVPVCLAEAV 646
            +DF+E  +PF+ +G+ G+LF++              P+V++P   GL H YLETLE AA +DR V+L+DP+GTG SSALP+   AA +        L  Q +AV+ + ++ ++H+LGHGT A                         LSV LASP+L     +PD +  AL + +  DG   P+CL  A+
Sbjct:    1 MDFDEVFIPFKFEGYSGKLFARTVGNGKDQKKAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSALPSVDAAADSPNLLGTASLVAQTRAVVDYFKVNAFHVLGHGTSAEAALELGRSLGKASPRPPGPEPEAVLSVILASPVLGENELSPD-FLEALRTPYIKDGNEPPLCLETAM 189
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: A0A4D9CNP1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNP1_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 1.450e-17
Identity = 75/226 (33.19%), Postives = 101/226 (44.69%), Query Frame = 2 
Query:  101 SGTLAAASTTAEAFCGEPYPVWAYNLDFEEGLVPFEADGF--KGQLFSKRF------------PLVLVPSA-GLTHSYLETLEAAASDDRRVVLWDPIGTGTSS-ALP-----APPTAAPA----------LERQLQAVLQFLELKSYHLLGHGTGAXXXXXXXXXXXXXXXXXAL-------------SVTLASPLLRGTPDGYAAALLSAFDGRAVPVCLAEAV 646
            +  L  A   A+A+CG+PYP WAY L F +GL+P    G      LF +              P++LVP   GL H Y ETLEA    DRRVV +DP+GTG SS +LP      PP  A            L+ QL+ +L+FLE+ SYH+   G                    +              S+TLA P +   P   +   L +  G AVP+C+ E+V
Sbjct:   45 ASVLGNAPRKAQAWCGKPYPPWAYRLRFNDGLIPVSLPGMAASADLFLRVVGDEQKEKDQGLAPILLVPGGPGLAHDYTETLEALVYGDRRVVSFDPVGTGQSSRSLPPALADGPPGGAETAEWKQAWSALLQEQLREILRFLEIDSYHVWAQGAACLPALQHTAAFAPPSSSPSSPSPSPTSLARGVKSLTLADPFVFA-PGTRSLPSLYSDRGAAVPLCVTESV 269
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: A0A6H5K2E0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E0_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.600e-15
Identity = 61/160 (38.12%), Postives = 87/160 (54.37%), Query Frame = 2 
Query:  230 LFSKRFPLVLVPSA-GLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPTAAPA--------LERQLQAVLQFLELKSYHLLGHGTGAXXXXXXXXXXXXXXXXXA-------LSVTLASPLLRG---TPDGYAAALLSAF--DGRAVPVCLAEAV 646
            + ++  P+V++P   GL H YLETLE AA +DR V+L+DP+GTG SSALP+   AA +        L  Q +AV+ F ++ ++H+LGHGTGA                         LSV LASP+L     +PD +  AL + +  DG   P+CL  A+
Sbjct:    1 MLAQHNPVVIIPGGPGLPHDYLETLEGAAMEDRVVLLFDPVGTGNSSALPSVDAAADSPNLLGTASLVAQTRAVVDFFKVNAFHVLGHGTGAEAALELGRSLGKASPRPPGPEPEAILSVILASPVLGENELSPD-FLEALRTPYIKDGNEPPLCLETAM 159
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: W7TG89_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TG89_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.860e-14
Identity = 77/209 (36.84%), Postives = 100/209 (47.85%), Query Frame = 2 
Query:  149 EPYPVWAYNLDFEEGLVPFEADGFKG--QLFSKRF------------PLVLVPSA-GLTHSYLETLEAAASDDRRVVLWDPIGTGTSS-ALP-----APPTAAPA----------LERQLQAVLQFLELKSYHLLGHG---------TGAXXXXXXXXXXXXXXXXXAL---SVTLASPLLRGTPDGYAAALLSAFDGRAVPVCLAEAV 646
            +PYP WAY L F +GL+P    G      LF +              P++LVP   GL H Y ETLEA    DRRVV +DP+GTG SS +LP      PP  A            L+ QL+ +L+FLE+ S+H+   G         T A         XXXXXX  A    S+TLA P +   P   +   L +  G AVP+C+ E+V
Sbjct:   51 QPYPPWAYRLRFNDGLIPVSLPGMPAPADLFLRVVGDEQKEKDQGLAPILLVPGGPGLAHDYTETLEALVYGDRRVVSFDPVGTGQSSRSLPPALADGPPGGAETAEWKQAWSALLQEQLREILRFLEIDSHHVWAQGAACLPALQHTAAFAPPSSAPSXXXXXXALARGVKSLTLADPFVFA-PGARSLPSLYSDRGAAVPLCVTESV 258
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: A0A7S2UVU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVU9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.480e-13
Identity = 48/110 (43.64%), Postives = 61/110 (55.45%), Query Frame = 2 
Query:  191 GLVPFEADGFKGQLFSKRF-------------PLVLVPSA-GLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPTAA-PALERQLQAVLQFLELKSYHLLGHGTG 475
            G +P+ A+G K Q    R              PLV+VP   GL+H+YLET+EA    +RRVV +DPIG G SS      +A+  AL  Q+ AV  FLELK YH+  HG G
Sbjct:    1 GTIPYTANGQKDQQIFIRVVGAERREKKLKLSPLVVVPGGPGLSHNYLETVEAVGQTERRVVFFDPIGAGLSSKPQDSQSASIEALASQIAAVTDFLELKEYHIYAHGFG 110
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: A0A7S2RFF4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFF4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.490e-11
Identity = 39/93 (41.94%), Postives = 51/93 (54.84%), Query Frame = 2 
Query:  131 AEAFCGEPYPVWAYNLDFEEGLVPFEADGFKG-QLFSKRF------------PLVLVPSA-GLTHSYLETLEAAASDDRRVVLWDPIGTGTSS 367
            A AFCGEP+P WAY + + EGL+ F+        L+ +              P++L+P   GL H Y ETLE     DRRVV +DPIGTG S+
Sbjct:   20 ASAFCGEPFPSWAYYIVYNEGLLAFQGPSQSSLDLYLRESGTQDAEKKAQVRPVLLIPGGPGLPHDYFETLEGLVKTDRRVVEFDPIGTGQST 112
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: R1CW06_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CW06_EMIHU)

HSP 1 Score: 70.9 bits (172), Expect = 3.030e-10
Identity = 46/120 (38.33%), Postives = 65/120 (54.17%), Query Frame = 2 
Query:  113 AAASTTAEAFCGEPYPVWAYNLDFEEGLVPFEADGFKGQLFSKRF------------PLVLVPSAGLTHSYLETLEAAASDDRRVVLWDPIGTGTSSALPAPPTAAPALERQLQAVLQFL 436
            AAA   A  +CGE  P WA+ + +++G VPFE +G KG+ + +              P++LV + GL + YLE LEA    DRRVV  + +  GT+ A  AP   A A   QL AV++ L
Sbjct:   15 AAAPRAAVGWCGEAVPSWAFFVKWDDGRVPFEWEGAKGEAYCRVVGDRAREAKAGVPPILLVGTPGLGYDYLENLEALTVSDRRVV--EVVFAGTNGAASAPLLTADACAAQLGAVVRSL 132
[Close]
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Match: A0A7S4GJC4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJC4_9EUGL)

HSP 1 Score: 66.2 bits (160), Expect = 2.040e-8
Identity = 69/215 (32.09%), Postives = 97/215 (45.12%), Query Frame = 2 
Query:   59 GRRQLL-----QAAAAAVISGTLAAASTTAEAFCGEPYPVWAYNLDFEEGLVPFEADGFKGQLFSK------------RFPLVLVPSAGL-THSYLETLE--AAASD----DRRVVLWDPIGTGTSSALPAPPTAAPALER----------QLQAVLQFLELKS---YHLLGHGTGAXXXXXXXXXXXXXXXXXALSVTLASPLLRGT----PDG 580
            GRR LL      AA  A++ G  AA      A+CG+PYP W   ++  +G + F+     G+LF +             +P+VLVP   L +H YLETLE   A  D    +RRV+ +DPIGTG S++      A                +L AVL+ ++L     +HL+ HG+G                    S+ LASPL+ G     PDG
Sbjct:  169 GRRTLLGTGTATAAGVAMLGGRPAATP----AWCGDPYPNWTRGININQGTILFKG----GRLFLRVLGDEGREGRQNAYPVVLVPGGPLVSHDYLETLEFLGAPPDRGGRNRRVIEYDPIGTGYSTSGNGAVKAVXXXXXXXXXXXXXXXELLAVLEVMDLGKGAPFHLVAHGSGCATALEALARGAAPGLR---SLVLASPLVGGPYPRQPDG 372
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|339455 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A835YII1_9STRA7.030e-194100.00Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A7S3XPS5_HETAK2.110e-2244.16Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
D8LLW3_ECTSI1.230e-1935.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A4D9CNP1_9STRA1.450e-1733.19Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A6H5K2E0_9PHAE2.600e-1538.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7TG89_9STRA3.860e-1436.84Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S2UVU9_9STRA6.480e-1343.64Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2RFF4_9STRA2.490e-1141.94Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
R1CW06_EMIHU3.030e-1038.33Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S4GJC4_9EUGL2.040e-832.09Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:70907..74781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|339455|MIX48218_4_21
Max annot lvl2759|Eukaryota
EggNOG OGs2E7EQ@1|root,2SE0Z@2759|Eukaryota
Evalue1.75e-20
Seed ortholog2880.D8LLW3
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAlpha/beta hydrolase fold-1
Ec32 orthologEc-14_001920.1
TranscriptId339777
TrackFilteredModels1
ProteinId339455
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339455gene_13039Tribonema minus UTEX_B_3156 geneContig_96 70907..74781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|339455Trimin1|339455|MIX48218_4_21Tribonema minus UTEX_B_3156 polypeptideContig_96 70907..74753 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13039_4exon_13039_4Tribonema minus UTEX_B_3156 exonContig_96 70907..71103 -
exon_13039_3exon_13039_3Tribonema minus UTEX_B_3156 exonContig_96 72331..72739 -
exon_13039_2exon_13039_2Tribonema minus UTEX_B_3156 exonContig_96 73781..73990 -
exon_13039_1exon_13039_1Tribonema minus UTEX_B_3156 exonContig_96 74547..74781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13039CDS_13039Tribonema minus UTEX_B_3156 CDSContig_96 74547..74753 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13039UTR5_13039Tribonema minus UTEX_B_3156 five_prime_UTRContig_96 74754..74781 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13039 ID=mRNA_13039|Name=jgi.p|Trimin1|339455|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1051bp|location=Sequence derived from alignment at Contig_96:70907..74781- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCCTGCGGGCCCACCAAGTGCAAATGACGGAAAGCCAAGCCATGA
ACCAGGCTGGTCGCCGTCAATTACTGCAGGCCGCCGCAGCAGCGGTCATA
TCGGGAACGCTCGCGGCTGCTTCAACGACCGCAGAAGCTTTCTGTGGCGA
GCCTTATCCGGTGTGGGCCTACAATCTTGATTTCGAGGAGGGATTGGTAC
CTTTCGAGGCGGACGGATTCAAGGGACAGCTGTTTAGCAAGCGCTTCCCC
CTCGTACTCGTGCCCAGCGCGGGCCTGACGCACTCTTACCTGGAAACACT
CGAAGCCGCGGCGAGCGACGACAGGAGAGTCGTGCTGTGGGACCCAATAG
GAACGGGCACATCGAGCGCGCTGCCAGCGCCGCCTACAGCGGCGCCGGCG
CTGGAGCGGCAGCTGCAAGCTGTTCTTCAGTTTCTCGAGCTCAAGAGCTA
CCACCTGCTGGGGCACGGCACAGGCGCGGCAGCAGCGCTCAGCGCCGCGG
CGTCGCAGAGCACTGATGCCGGTGCCGGCGCTCTGTCAGTTACACTCGCG
TCGCCGCTGCTGCGCGGCACCCCCGACGGGTACGCCGCCGCGCTGCTGTC
AGCCTTCGACGGCCGCGCGGTGCCGGTGTGCCTGGCGGAGGCGGTGAAGG
AGGACGCAGCGGCGGCGGATGCGCAGCAAGGGGGGGACGGGGGGGGCGCT
GCGGGGGGCGTGTGGGAGGTGAGCACAGACGTTGAAGTTTACAAAGCTGG
TGGTAGGTTCAAAGTTGAGGTTGAAGTTTGCTTGGAGGACGCGGCGGCGG
CGGATGCGCAGCGACGGGCGGGAGGGGGCGGGGGCTGCGGGGGACGTGTG
GGAGTGCTCTACGGCGCCAACGACCCGTATGTCAGCAAGAGCGATGCGCA
GCAAATCCGCGATGCCGCGGAGGGCGCGCTCGCTGTGGCAATGCCCAGCG
CCGGCCACCTTGCGCACCTGGAGCGGCGCGAGGAGTACCTGGGAGAGCTG
CTGCCGTTCCTGCAGGCGGCGGACGCGGTGAACGCGCAGGCGGCGCGATG
A
back to top

protein sequence of jgi.p|Trimin1|339455

>Trimin1|339455|MIX48218_4_21 ID=Trimin1|339455|MIX48218_4_21|Name=jgi.p|Trimin1|339455|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=341bp
MTESQAMNQAGRRQLLQAAAAAVISGTLAAASTTAEAFCGEPYPVWAYNL
DFEEGLVPFEADGFKGQLFSKRFPLVLVPSAGLTHSYLETLEAAASDDRR
VVLWDPIGTGTSSALPAPPTAAPALERQLQAVLQFLELKSYHLLGHGTGA
AAALSAAASQSTDAGAGALSVTLASPLLRGTPDGYAAALLSAFDGRAVPV
CLAEAVKEDAAAADAQQGGDGGGAAGGVWEVSTDVEVYKAGGRFKVEVEV
CLEDAAAADAQRRAGGGGGCGGRVGVLYGANDPYVSKSDAQQIRDAAEGA
LAVAMPSAGHLAHLERREEYLGELLPFLQAADAVNAQAAR*
back to top

mRNA from alignment at Contig_96:70907..74781-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13039 ID=mRNA_13039|Name=jgi.p|Trimin1|339455|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3875bp|location=Sequence derived from alignment at Contig_96:70907..74781- (Tribonema minus UTEX_B_3156 )
ATGCAGCCTGCGGGCCCACCAAGTGCAAATGACGGAAAGCCAAGCCATGA
ACCAGGCTGGTCGCCGTCAATTACTGCAGGCCGCCGCAGCAGCGGTCATA
TCGGGAACGCTCGCGGCTGCTTCAACGACCGCAGAAGCTTTCTGTGGCGA
GCCTTATCCGGTGTGGGCCTACAATCTTGATTTCGAGGAGGGATTGGTAC
CTTTCGAGGCGGACGGATTCAAGGGACAGCTGTTTGTGCGTGTGCTGGGC
AATCAGAAACGCGAGAAAAAGGCAAGTGCCTGTCTGCCGATTTTGATGAG
AGTCTGGCAGCTTGCATGGCTGTGAGCTGCACATAGGACTCTTGGCTGCT
TGTGTTCAGTTGCTTGTACAGTCACATTCAATGTCATGTTGCCTTTTTCA
ATCATTGACTCATTGTAGTACAGGCGCAGCCTGATGGCGCTCTAGCTTAG
CCCTGCCGCAACATGCGCAGATGCATAACTGTAGCTATGATGCCTAGTTG
CATAAATGTATGCTGCGTGCTTTGCTGACCAGTCCGGCCATGTCCATGCA
AGGCTGCTTGCACGTTGACGCGCTTGCAGTATGCTCAGTGAAAGCTTTGC
CTCTGCACAGCGGTGCTGCTTCAACGCCAACATGAACAAGTACCAGCCTC
GCCGCACATCAGCCATATCAAAGAGTCTCGAAACGCTTTCTCTGCGCAGC
GGCGCCGCTGCAATGCCACCACCACCAGTCACCACACCTTTGTCGCGCAG
CAACCATAACAAAGCAGCCTCTCTGTCGTTTCACACCGCAGAGCAAGCGC
TTCCCCCTCGTACTCGTGCCCAGCGCGGGCCTGACGCACTCTTACCTGGA
AACACTCGAAGCCGCGGCGAGCGACGACAGGAGAGTCGTGCTGTGGGACC
CAATAGGAACGGGCACATCGAGCGCGCTGCCAGCGCCGCCTACAGCGGCG
CCGGCGCTGGAGCGGCAGCTGCAAGCTGTTCTTCAGTTTCTCGAGCTCAA
GGTGAGTGAAATCACGTGATTTTTCAATCACTTGAAGCCGGAAATTGCCT
GCACGACCGTCATGCGGCATGTTGCTGTTCACTGTGTAGGATGCCTGCGG
TGTGGGGGCGAGTGCGGACTGTCGTACGAGATGCGGCAGCGGCGGCAGCG
GCAGCAGCAGCGGCAGCAGCAGTGGCGGCAGCAGCGGCAGCAGCAGTGGC
GGCAGCAGCAGCGGCAGCGACAGCAGCGGCGGCAGCAGTGGTACCTCATG
GAGGTTGCAGCCTAGCGTTGAGGCATGCGTCACGAAAGGGTACACGTCAT
TCAAGTGCACGCGTGTGGCAGAACAGGCAGCACGCATGACAGCGCACGCC
GTTGCTTGCTAACTTGATCCGTCCTTGCTACGATGCATGAAGAATTTCTG
AACAAAGGCGGCCGAGAGCGCTACAGCGTGCTGAGCATGCACTTGCACAC
AGCACGCCGCCAGTGACCCTGTTGAGCGAGCTGTGCTCTGACGATACATA
CATACTGTGTCGGGACACCAATGCTGATGTTACCAGTGGCAGCACCGAAG
TGTACACTGTACACCAGTGGCGTGAGGCGCATCGCGGCGCATGACCATGA
GTCATGAGTATACAAGCGAGTCGATGAGTCCATCAACGAGTCATTGAATC
GAGTGCACATGACACCTCTGCGTCCCACCTCAAGCGCCAACAAAACAAGC
ACCAGGAGAGGCTGCTCGCTACGCTAAAAAACTACAGTAACGCTCACCGC
TTTCACCGCTGCGATCAAACTCAATCTCCTATGGCTTACCGCTCATAGCC
GCTGCACATTTCAACTCAACCTCTACTGCGCTGCCGCAGAGCTACCACCT
GCTGGGGCACGGCACAGGGGCAGCAGCAGCGCTCAGCGCGGCGGCATCGC
AGCCATTGAGTGCAAGCGACATCTCCACGTCCCACCTTAATTATCAACCT
AAAGCAGGGTGCTGCTTGCATGCCATCGAGGTAGTGCTAAGGCTTACTGT
TCTCAGCTTCAATTGCACCCAACTTCTCTCGCGCCGCTGCAGAGCTACCA
CCTGCTGGGGCACGGCACAGGCGCGGCAGCAGCGCTCAGCGCCGCGGCGT
CGCAGAGCACTGATGCCGGTGCCGGCGCTCTGTCAGTTACACTCGCGTCG
CCGCTGCTGCGCGGCACCCCCGACGGGTACGCCGCCGCGCTGCTGTCAGC
CTTCGACGGCCGCGCGGTGCCGGTGTGCCTGGCGGAGGCGGTGAAGGAGG
ACGCAGCGGCGGCGGATGCGCAGCAAGGGGGGGACGGGGGGGGCGCTGCG
GGGGGCGTGTGGGAGGTGAGCACAGACGTTGAAGTTTACAAAGCTGGTGG
TAGGTTCAAAGTTGAGGTTGAAGTTTGCTTGGAGGACGCGGCGGCGGCGG
ATGCGCAGCGACGGGCGGGAGGGGGCGGGGGCTGCGGGGGACGTGTGGGA
GGTGAGCACATGAGTTGAAGTAGGTGTGATGTTGACGTTGAGGTTGAAGT
TTGCTTGGAGGACGCGGCGGCAGCGGCAGATGCGCAGCGGCGGGGGGAGA
GGGGGGGCGCTGCGGGGGACGTGTGGGAGGTGAGCACATGCATTGAAATT
TACCCAAGCTGGTGATAGGTTTAACGGCGAGGTTGAGGTTTGCTTGAAGG
ATGCGGCGGCGGCGGCGAATGCGCAGCGGCGGGGAGATGGGGCGGGGGCT
GCGGGGGACGTGTGGAAGGTAAGCACATGCATTGAAGTTTACAAAGACGG
TGATAGGTTTGAAGTTGAGGTTGAAGTTTGCTCTAGCGCCGCTCGCACAC
CTGCATACATCTGAGCATGAGCTGCCGACAGGTTTGAAGTTGGAGTTGAA
GCTTTCTGGAGCGCATCGTGTGTGCTGGCCTGAGGAGTGTGATGCGTGAC
GAGCAGTCAGCCTTGGGGGGGCGGCAGGGTGCAGCGGCACGCTGTGAAAT
AGAGGTTGAAGTTCGCTCAAGCGCCCACATGCATGGCCTCAGGAGCTTGG
TTTGTGACGATCATCAGCCGGGGGGGCGGCGGGGTGGCAGGCTGCAGCGC
TGCAGCGGGCATGCAGTGTTTGTGCTGGCGTGCAATGTGTGCTACAGGTG
TGCCGTTGATGGGGGCTTGATGGGAGCATGGGGGGCTTGCGGGTATATTC
CGCGGCGCGCAAAGCAAGCATGGCAAAGCCCGTGCAACGTGTTGACGCAT
CCAGAGAAGTTGAAGTTCAAGGCTTGCAGACAGTTTGGTCATGCAGTAGG
TATGAACAGTATGTATGAACAGCATGTTTGAGTCACCGCCCAAGCGTGCT
GGGCAGAGGGACCTGGCGGCTGATCAAGTGCTGCGTTCGCAAACCGCTTG
GCTCACACGTTGAGTCGCCTTTGGTGCATCGCTGCTGCTGCGGCCGCCTC
CGCTGCTGCTGCTGCTGCCGCTGCCGGTGCTGCTGCCACAAGCACCTACA
AGTGACGGAGTAGAAGACGACGTAGACAGAGGTGTGTAGTTCTTTTCAGT
GAGGGAGCAGTAAGATTCACGTGCCGTTTCCCTAGCATCTCGTGGCCGAG
ATCCTACGCGTGTACTCGCCTGACGACCTGCTGCTGCCGCTGCCGCCGCT
GCTGCTGCTGCCGCCGCTGCCGCCGCCGCCGCGACCGCTGAGCACAGTCC
GTCAAAGCTCTTAAAGTGCCGCTGCTAGTGCTCTACGGCGCCAACGACCC
GTATGTCAGCAAGAGCGATGCGCAGCAAATCCGCGATGCCGCGGAGGGCG
CGCTCGCTGTGGCAATGCCCAGCGCCGGCCACCTTGCGCACCTGGAGCGG
CGCGAGGAGTACCTGGGAGAGCTGCTGCCGTTCCTGCAGGCGGCGGACGC
GGTGAACGCGCAGGCGGCGCGATGA
back to top

Coding sequence (CDS) from alignment at Contig_96:70907..74781-

>mRNA_13039 ID=mRNA_13039|Name=jgi.p|Trimin1|339455|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1023bp|location=Sequence derived from alignment at Contig_96:70907..74781- (Tribonema minus UTEX_B_3156 )
ATGACGGAAAGCCAAGCCATGAACCAGGCTGGTCGCCGTCAATTACTGCA
GGCCGCCGCAGCAGCGGTCATATCGGGAACGCTCGCGGCTGCTTCAACGA
CCGCAGAAGCTTTCTGTGGCGAGCCTTATCCGGTGTGGGCCTACAATCTT
GATTTCGAGGAGGGATTGGTACCTTTCGAGGCGGACGGATTCAAGGGACA
GCTGTTTAGCAAGCGCTTCCCCCTCGTACTCGTGCCCAGCGCGGGCCTGA
CGCACTCTTACCTGGAAACACTCGAAGCCGCGGCGAGCGACGACAGGAGA
GTCGTGCTGTGGGACCCAATAGGAACGGGCACATCGAGCGCGCTGCCAGC
GCCGCCTACAGCGGCGCCGGCGCTGGAGCGGCAGCTGCAAGCTGTTCTTC
AGTTTCTCGAGCTCAAGAGCTACCACCTGCTGGGGCACGGCACAGGCGCG
GCAGCAGCGCTCAGCGCCGCGGCGTCGCAGAGCACTGATGCCGGTGCCGG
CGCTCTGTCAGTTACACTCGCGTCGCCGCTGCTGCGCGGCACCCCCGACG
GGTACGCCGCCGCGCTGCTGTCAGCCTTCGACGGCCGCGCGGTGCCGGTG
TGCCTGGCGGAGGCGGTGAAGGAGGACGCAGCGGCGGCGGATGCGCAGCA
AGGGGGGGACGGGGGGGGCGCTGCGGGGGGCGTGTGGGAGGTGAGCACAG
ACGTTGAAGTTTACAAAGCTGGTGGTAGGTTCAAAGTTGAGGTTGAAGTT
TGCTTGGAGGACGCGGCGGCGGCGGATGCGCAGCGACGGGCGGGAGGGGG
CGGGGGCTGCGGGGGACGTGTGGGAGTGCTCTACGGCGCCAACGACCCGT
ATGTCAGCAAGAGCGATGCGCAGCAAATCCGCGATGCCGCGGAGGGCGCG
CTCGCTGTGGCAATGCCCAGCGCCGGCCACCTTGCGCACCTGGAGCGGCG
CGAGGAGTACCTGGGAGAGCTGCTGCCGTTCCTGCAGGCGGCGGACGCGG
TGAACGCGCAGGCGGCGCGATGA
back to top