mRNA_13027 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|6649
Unique Name	mRNA_13027
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: A0A836CMP4_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMP4_9STRA)

HSP 1 Score: 398 bits (1023), Expect = 2.610e-139
Identity = 203/203 (100.00%), Postives = 203/203 (100.00%), Query Frame = 1

Query:   58 MQAPGAGSAGRGETVQVAKRKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPPAEGQKCIIA 666
            MQAPGAGSAGRGETVQVAKRKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPPAEGQKCIIA
Sbjct:    1 MQAPGAGSAGRGETVQVAKRKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPPAEGQKCIIA 203

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: A0A7S1CXL3_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1CXL3_CYCTE)

HSP 1 Score: 197 bits (502), Expect = 2.980e-60
Identity = 98/187 (52.41%), Postives = 138/187 (73.80%), Query Frame = 1

Query:  103 QVAKRKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPPAEGQKCII 663
            Q+  RK+A+LGF  VGK+SL   FV G+F + Y+PTI +T H ++ F K   AT+I+DTAG+D ++++SR+AS+GVHGY +++S +S+ SF+ I ++NE L+H LGD PDV RVLVG+M DLSD+RQ+TTQQ QELA  WGVP++ECS+K   N+  VF  L++E+E+ +G   E E   EG  CII
Sbjct:   11 QLVHRKVAILGFRAVGKSSLTNAFVSGTFAETYDPTIESTHHKTIRFRKVHFATDIVDTAGMDEYSRLSRNASLGVHGYALVFSIVSKQSFDRIVDLNETLLHALGDAPDVPRVLVGSMRDLSDRRQVTTQQAQELAESWGVPYIECSSKTGENVAEVFHTLLREIERDEGLLGENE---EGG-CII 193

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: B8C1N9_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1N9_THAPS)

HSP 1 Score: 190 bits (483), Expect = 2.020e-57
Identity = 95/183 (51.91%), Postives = 130/183 (71.04%), Query Frame = 1

Query:  115 RKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPPAEGQKCII 663
            RKIA+LGF  VGKTSL   FV G+F D Y+PTI NT H ++ F K   AT+I+DTAG+D ++ ISR+ASVGVHGY +++S  SR+SFEN+  INE+L++ LGD PDV R+LVG+M DL ++R++ T Q Q+LA  W +P++ECS+K   N+  VF  L+KE+E+  G   E E      KC+I
Sbjct:   12 RKIAVLGFRAVGKTSLTNAFVSGTFSDNYDPTIENTHHKTIRFRKVHFATDIIDTAGMDEYSSISRNASVGVHGYALVFSITSRSSFENVIKINESLLNALGDAPDVPRILVGSMKDLGEEREVNTAQAQKLADGWRIPYLECSSKTGENVVEVFHVLLKEIEKDDGLLNENEE----DKCVI 190

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: A0A7S2A5H6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A5H6_TRICV)

HSP 1 Score: 190 bits (482), Expect = 2.780e-57
Identity = 94/173 (54.34%), Postives = 125/173 (72.25%), Query Frame = 1

Query:  115 RKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEE 633
            RK+A+LGF  VGKTSL   FV GSF + Y+PTI NT H ++ F K   AT+I+DTAG+D ++++SR+ASVGVHGY++++S  SR SF+ I  INE L++ LGD PDV RVLVG+M DL+ QRQ++ Q  Q LA  WGVP++ECS+K   N+  VF  LIKE+E+  G   E E
Sbjct:   11 RKVAVLGFRAVGKTSLTNAFVCGSFAEGYDPTIENTHHKTIRFRKVHFATDIVDTAGMDEYSRLSRNASVGVHGYVLVFSITSRQSFDRISQINEALLYALGDAPDVPRVLVGSMRDLAKQRQVSHQDAQNLAESWGVPYLECSSKTGENVSEVFHTLIKEIEKDDGLLSENE 183

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: A0A7S2XWX8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWX8_9STRA)

HSP 1 Score: 189 bits (480), Expect = 7.170e-57
Identity = 97/198 (48.99%), Postives = 142/198 (71.72%), Query Frame = 1

Query:   88 RGETVQVAKRKIALLGFTGVGKTSLATRFVQGSFVD------MYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPPAEGQKCII 663
            R E ++V  RK+A+LGF  VGKT+LAT+F +GS  +       Y PTI NTF  ++  G+    TEI+DTAG+D ++++SR+ASVGVHGYL+++ST SR+SF+ ++ INE L++ LGD  DV RVLVG+ +DL +QRQ+ +++G  LA EWGVP+ ECSA+ NIN+D VF  +++E+E+  G  +EE+     + CII
Sbjct:    5 RKEPIEV-NRKLAILGFREVGKTTLATQFAEGSSTNGAGVLGEYEPTIENTFRKTITIGRARFNTEIVDTAGMDEYSRLSRNASVGVHGYLLVFSTTSRSSFDKVRLINEVLLNMLGDALDVPRVLVGSKLDLQEQRQVNSEEGASLADEWGVPYWECSARANINVDKVFTAVVQEIEKDSGLLIEEKE----EPCII 197

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: A0A7S2RGW3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGW3_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.920e-56
Identity = 93/175 (53.14%), Postives = 128/175 (73.14%), Query Frame = 1

Query:  115 RKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPP 639
            RKIA+LGF  VGKT+L T FV+G FV+ Y+PTI NTF  ++NFGK    TEI+D+AG+D ++++SR+ASVGVHGYL+LY+  SRNSF+ I++I++ L+   G    V RVLVGTM+DLS  R++  ++   LA   G+PF+ECSAKEN+N+  VF  L++E E+  G   EE PP
Sbjct:   53 RKIAVLGFRAVGKTTLTTHFVEGRFVERYDPTIENTFQKTINFGKTQFFTEIVDSAGMDEYSRLSRNASVGVHGYLLLYAINSRNSFDKIQSIDDMLVDMHGGSESVTRVLVGTMIDLSSSREVGYEEAHALADSRGIPFIECSAKENVNVSEVFTTLLRETEKDSGSMEEEAPP 227

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: A0A7R9WEL8_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WEL8_9STRA)

HSP 1 Score: 185 bits (469), Expect = 2.560e-55
Identity = 92/173 (53.18%), Postives = 124/173 (71.68%), Query Frame = 1

Query:  115 RKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEE 633
            RK+A+LGF  VGKTSL   FV G+F D Y+PTI NT H ++ F K   AT+I+DTAG+D ++++SR+ASVGVHGY++++S  SR SFE I  INE L++ LGD  DV RVLVG+M DL+ QRQ++ Q    LA  WG+P++ECS+K   N+  VF  LIKE+E+  G   E+E
Sbjct:   11 RKVAVLGFRAVGKTSLTNAFVSGTFGDGYDPTIENTHHKTIRFRKVHFATDIVDTAGMDEYSRLSRNASVGVHGYVLVFSIASRQSFEKITQINEALLNALGDALDVPRVLVGSMRDLAHQRQVSYQDAHSLAESWGIPYLECSSKTGENVSEVFHILIKEIEKDDGLLNEQE 183

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: A0A7S2NSH9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NSH9_9STRA)

HSP 1 Score: 184 bits (466), Expect = 7.480e-55
Identity = 93/188 (49.47%), Postives = 129/188 (68.62%), Query Frame = 1

Query:  103 QVAKRKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPPAEGQKCIIA 666
            ++  RK+ALLGF  VGK+SL   FV G+F + Y+PTI NT H  + F K   AT+I+DTAG+D ++++SR+ASVGVHGY++++ST SR SF+ I NINE L++ LGD P V RVLVG+M DL DQRQ+    G ELA   G+P++ECS+K   N+  VF  L++E+E+  G   E E       C+I+
Sbjct:    8 ELVNRKVALLGFAAVGKSSLTNAFVNGTFNERYDPTIENTHHKIIRFRKVHFATDIVDTAGMDDYSRLSRNASVGVHGYVLVFSTASRQSFDRIPNINEALLNALGDAPGVPRVLVGSMRDLVDQRQVPYSDGVELAESLGMPYLECSSKRGENVAEVFHTLLREIEKDDGLLTENEAGG----CVIS 191

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: F0Y9Q3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Q3_AURAN)

HSP 1 Score: 183 bits (465), Expect = 1.240e-54
Identity = 92/176 (52.27%), Postives = 126/176 (71.59%), Query Frame = 1

Query:  112 KRKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPP 639
            +RK+A+LG+  VGKTSLAT FV+G FVD Y+PTI NTF   + F +   ATEI+D AG+D ++++SR+ASVGVHGYL++YS+ SR+SFE I+ IN+ ++   G  P V RVLV TM DL  QRQ+   +G+ LA    +PF+ECSAKEN+N+  VF  LIKE+E+  G   ++  P
Sbjct:   16 QRKVAVLGYRAVGKTSLATHFVKGRFVDEYDPTIENTFAKKIRFKRAHFATEIIDAAGMDEYSRLSRNASVGVHGYLLVYSSTSRSSFEKIRFINDAVLRVQGQSPGVVRVLVATMADLRGQRQVEADEGRALADRMHIPFVECSAKENLNVAEVFTTLIKEIEKDTGFLDDQAQP 191

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BLAST of jgi.p|Trimin1|6649 vs. uniprot
Match: A0A7S2MV59_9STRA (Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S2MV59_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.200e-54
Identity = 91/173 (52.60%), Postives = 124/173 (71.68%), Query Frame = 1

Query:  115 RKIALLGFTGVGKTSLATRFVQGSFVDMYNPTITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYSTISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQELAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEE 633
            RKIA+LGF  VGKTSL   FV G+F + Y+PTI NT H ++ F K   AT+I+DTAG+D ++++SR+ASVGVHGY +++S  SR SF+ I  I+++L++ LGD  DV RVLVG+M DL+DQRQ+  Q  Q LA  WGVP++ECS+K   N+  VF  L+KE+E+  G   E E
Sbjct:   14 RKIAVLGFRAVGKTSLTNAFVSGTFSETYDPTIENTHHKTIRFRKVHFATDIVDTAGMDEYSRLSRNASVGVHGYALVFSIASRQSFDRITQISDSLLNALGDALDVPRVLVGSMRDLADQRQVNHQDAQNLADSWGVPYIECSSKTGENVAEVFHTLLKEIEKDDGLLSETE 186

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|6649 vs. uniprot

BLAST of jgi.p|Trimin1|6649 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CMP4_9STRA	2.610e-139	100.00	Ras family-domain-containing protein n=1 Tax=Tribo...	[more]
A0A7S1CXL3_CYCTE	2.980e-60	52.41	Hypothetical protein n=1 Tax=Cyclophora tenuis Tax...	[more]
B8C1N9_THAPS	2.020e-57	51.91	Uncharacterized protein n=1 Tax=Thalassiosira pseu...	[more]
A0A7S2A5H6_TRICV	2.780e-57	54.34	Hypothetical protein n=1 Tax=Trieres chinensis Tax...	[more]
A0A7S2XWX8_9STRA	7.170e-57	48.99	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S2RGW3_9STRA	2.920e-56	53.14	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7R9WEL8_9STRA	2.560e-55	53.18	Hypothetical protein n=1 Tax=Pseudictyota dubia Ta...	[more]
A0A7S2NSH9_9STRA	7.480e-55	49.47	Hypothetical protein n=1 Tax=Leptocylindrus danicu...	[more]
F0Y9Q3_AURAN	1.240e-54	52.27	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A7S2MV59_9STRA	3.200e-54	52.60	Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_109	contig	Contig_109:502683..506344 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|6649\|CE6648_158
BRITE	ko00000,ko00001,ko04031
KEGG Pathway	ko04072,ko04140,ko04150,ko04151,ko04152,ko04211,ko04218,ko04714,ko04910,ko04919,ko05165,ko05231,map04072,map04140,map04150,map04151,map04152,map04211,map04218,map04714,map04910,map04919,map05165,map05231
KEGG ko	ko:K07208
Description	Ras of Complex, Roc, domain of DAPkinase
COG category	S
Max annot lvl	2836\|Bacillariophyta
EggNOG OGs	COG1100@1\|root,KOG0395@2759\|Eukaryota,2XC2N@2836\|Bacillariophyta
Evalue	3.78e-59
Seed ortholog	35128.Thaps40580
Hectar predicted targeting category	other localisation
TranscriptId	6971
Track	FilteredModels1
ProteinId	6649

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|6649	gene_13027	Tribonema minus UTEX_B_3156	gene	Contig_109 502683..506344 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|6649	Trimin1\|6649\|CE6648_158	Tribonema minus UTEX_B_3156	polypeptide	Contig_109 502740..506243 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13027_1	exon_13027_1	Tribonema minus UTEX_B_3156	exon	Contig_109 502683..502787 +
exon_13027_2	exon_13027_2	Tribonema minus UTEX_B_3156	exon	Contig_109 502891..503073 +
exon_13027_3	exon_13027_3	Tribonema minus UTEX_B_3156	exon	Contig_109 503252..503316 +
exon_13027_4	exon_13027_4	Tribonema minus UTEX_B_3156	exon	Contig_109 503650..503710 +
exon_13027_5	exon_13027_5	Tribonema minus UTEX_B_3156	exon	Contig_109 503898..503981 +
exon_13027_6	exon_13027_6	Tribonema minus UTEX_B_3156	exon	Contig_109 505232..505301 +
exon_13027_7	exon_13027_7	Tribonema minus UTEX_B_3156	exon	Contig_109 506143..506344 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_13027	UTR5_13027	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_109 502683..502739 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13027	CDS_13027	Tribonema minus UTEX_B_3156	CDS	Contig_109 502740..502787 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_13027	UTR3_13027	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_109 506244..506344 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_109:502683..506344+
coding sequence from alignment at Contig_109:502683..506344+

spliced messenger RNA

>mRNA_13027 ID=mRNA_13027|Name=jgi.p|Trimin1|6649|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=770bp|location=Sequence derived from alignment at Contig_109:502683..506344+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGGAGTGAGTGCGTTCATGTTAGCTTCCGCCTGATAACGGCAGCGGAC
AGGGACGATGCAGGCCCCAGGAGCCGGCTCTGCCGGGAGGGGCGAAACAG
TGCAGGTAGCCAAGCGGAAAATCGCCCTGCTGGGCTTCACCGGGGTGGGC
AAGACCTCGCTGGCAACTCGATTTGTGCAGGGCTCCTTTGTGGACATGTA
TAATCCCACAATCACAAACACCTTCCACACAAGCGTAAACTTTGGCAAGA
AAACGCTCGCGACAGAGATTCTGGACACCGCCGGTCTGGACGGGCACACT
CAGATATCAAGACATGCCTCCGTGGGAGTACACGGCTATCTCATGCTGTA
CAGCACCATCAGCAGGAACAGCTTCGAGAACATCAAGAATATCAACGAGA
ACCTCATGCATACGCTGGGAGATCTGCCGGATGTGGCCAGGGTGCTGGTG
GGGACCATGATGGATCTGTCTGATCAGCGACAGATCACCACTCAGCAGGG
ACAGGAACTGGCCAGGGAGTGGGGTGTGCCCTTCATGGAATGTTCAGCCA
AGGAAAACATCAACATAGACGCTGTATTTAAGTGCTTGATCAAAGAAGTG
GAGCAAGCTCAGGGGGGCACTGTTGAAGAAGAGCCCCCTGCTGAGGGGCA
GAAGTGCATCATTGCCTGAGGAACACTCAGGGAACCATCTACGATGCACT
TACAGTCATGCACACGATACATGCATGTACATGGCGCTGTAAAGACACAA
GCTGATGATGTGCGCATAGA

protein sequence of jgi.p|Trimin1|6649

>Trimin1|6649|CE6648_158 ID=Trimin1|6649|CE6648_158|Name=jgi.p|Trimin1|6649|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=204bp
MQAPGAGSAGRGETVQVAKRKIALLGFTGVGKTSLATRFVQGSFVDMYNP
TITNTFHTSVNFGKKTLATEILDTAGLDGHTQISRHASVGVHGYLMLYST
ISRNSFENIKNINENLMHTLGDLPDVARVLVGTMMDLSDQRQITTQQGQE
LAREWGVPFMECSAKENINIDAVFKCLIKEVEQAQGGTVEEEPPAEGQKC
IIA*

mRNA from alignment at Contig_109:502683..506344+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13027 ID=mRNA_13027|Name=jgi.p|Trimin1|6649|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3662bp|location=Sequence derived from alignment at Contig_109:502683..506344+ (Tribonema minus UTEX_B_3156 )
GCGGGAGTGAGTGCGTTCATGTTAGCTTCCGCCTGATAACGGCAGCGGAC
AGGGACGATGCAGGCCCCAGGAGCCGGCTCTGCCGGGAGGGGCGAAACAG
TGCAGGTGTGTGTTTTTTCAGGATCACTCGTAACTGTCTCATGCGGCGCG
ACCTTCGGCTATCGTGCTTTGCAAGATGACCACGCTCTCAATGTTACTCT
GAACGCAGGTAGCCAAGCGGAAAATCGCCCTGCTGGGCTTCACCGGGGTG
GGCAAGACCTCGCTGGCAACTCGATTTGTGCAGGGCTCCTTTGTGGACAT
GTATAATCCCACAATCACAAACACCTTCCACACAAGCGTAAACTTTGGCA
AGAAAACGCTCGCGACAGAGATTCTGGACACCGCCGGTCTGGTGAGTGCT
GTCCTTGCTGTTCACTGCAGAAGGCTGCAACCCTATTTCATTGCCTTGAA
GCACTGTTGTTTGTAGCATGCATGCCCTTGGATACTTGAGCCCCAACTGC
CATGAATTGAATACTCATGCATGCTGAAGGTTCTAATGCATGCCTCTCAT
CTGGTGCGCATGCATGCAGGACGGGCACACTCAGATATCAAGACATGCCT
CCGTGGGAGTACACGGCTATCTCATGCTGTACAGGTGAGCTCGTTGCCAG
CTCCTGAGCACTGTTGCAATTCACGCTGCATCCAATTTCTGAAACAGAAG
TCAAATCAACTCCATCCGACAAGCAAGGCGTGCTTGTGCCTACAGCACGT
TCAATTGAGTGTTGGATGTTCTTCGTAACTGGTCGCACACGTCTTGAAGG
CAATCAACATGTCAGACAACGCAGAACACAAACCGTTGTGCGAAACATTA
TGCCTAGCTTTCTTCGTGCTGATGCTGGAGGCACCAACCTGGCGCAGGTG
CAACGCTTTGTGCGCAATGAACGACTGTCTCTGACGGCACGTGATGCTGC
CATCTTGTGTGGTGCAGCACCATCAGCAGGAACAGCTTCGAGAACATCAA
GAATATCAACGAGAACCTCATGCATACGGTGAGTGCAAAGGCCGTGCTGA
CAGCATCAATACCTGAAAAGCTAAATCTGGATCTTTGCCTGCCGCACACA
TCCTGATGATTGCCTAGCTATCCTGTGATGTGTGATAGACCACTCACAGC
TACTAGACTGCAATGCGCAAGTTTTGCATGATTGTCTGATCGAGCACTTT
CCGACTTGCTTGCAGCTGGGAGATCTGCCGGATGTGGCCAGGGTGCTGGT
GGGGACCATGATGGATCTGTCTGATCAGCGACAGATCACCACTCAGCAGG
TATGGTTCACATGAGAAGTAGAGATTGTTGAGGTTCACTGAGGCATGCAT
GCAAATTTGAACGCATGCTTCAACGTCCTTATCAGGAGTACTTGGTCATC
TCACAACAACAAAATACCTCTGCTGTACCGCATGGTGGCACTATACTGCA
TGAAGCGTGTGTGACAGCCAGGATTCAGCGACGGCAATTTGACTATCATG
ACTAGAAAGTGGGTAGCGCACTCGTGCAGCCCTAACCCTAGGCTTTGGGC
CTGTGGGATTTCCTGAGTATGATTGCAACTTGAAAGGCTGGCACTAGTCA
GAGAGCAAAGCATTGTGTGCTAATTATATGGTTGCTTCCAGCGGAGCGTG
TCTTGTGTTACATGTTGTGTATCATACATACATATCGTCCTGCTACAGTT
ATCCCCGACTTTGTGAACGGATCGCCGAGGCTGGTGCACTACGACTGGCA
TCAGCCTTTTGTCTTGTAGGAGCACTGTATCCCAACGCAACTGCGATGCC
ACCCCTTGTTATAATAGCAGTATTGGCGCTTGCAGTGGTGATGATCAGCC
GGAGTGCTCAGGCTCTGCCAGCCAGGGAGTGCGTTGGAGTAGTTTGTGTT
GACAAGCGGAGTTGTATGCACTCCCGCAGTGGCTGTGACAGCGCTCAAGT
GTCACAGCGCATCATGCGACAACTCATTAGAGCTGACACCAGACTTTATG
GCTGCTGTGTAGCCTTCCTAGCAACAGGTTGTGAAGTTCGCTGCCAACCA
GAGGACTTGCAGTGAGGTTTGAAGTATCTATATGTATCATGTGACCTCCC
TGCTCGGTCCGAACTTTGAGGACAACTTGCAGTTGCACCACCTGCAAGTT
GCACCACCATTGCAATCATGAGATCACCTGGGTTCCTGATTAAGTGACAT
GCGTCAGCAGCACACCATGCTACTTTGTTGTGTTGATTCTTGGAGCTTCT
GCTGCAATGATGTTTGTGGTGCTGGTGCCAGAACGTAATCAACCAATTGC
TGCTGCAAAATTTTCAAACCTAGACTTGAGCGTGGGAGGAAACCCCCCTT
TTTTAAACAACTACCATATGCATCGCTGCTCTGCAGCAAGACTGGGGATC
GGCCTTTTCAATTGTTTGCTGAAACCTTTGACCCACGTACTCTGGTCTTG
TTGCAAGGCAAAGTGCCAGGTTAAGCAACTGATCACGGAACGGTTCACAA
GCATTGTCTGCCTGTCTCACTAATAGAGTCACTATCCGTGTCAAAACAGG
GACAGGAACTGGCCAGGGAGTGGGGTGTGCCCTTCATGGAATGTTCAGCC
AAGGAAAACATCAACATAGGTCAGTTCATCTTCAGTTCACCTGTGCCCGC
TGACCCTCAAGGGTCCCCTTGCTGCATGTGCAACGCTGCATCTTTGTGCA
TGCATTGTCAGGAGCACTCACTGGTGCTGAAATCACCGTACTTGAAGTAG
AAGGGAGCTTACATTGGCTGAAGTTGCCAGCATGGTGAGCTTAGCTGACC
GTGACATGTTCGTTCACTGCCGTGACACACTGCGGCTTAGGCCCCACTCA
CCATTGACACTGCTTATTCATGTATGTATGAAAAACGAATCAAAAAGATC
GTTGAGCTCTAGGTGACAAGGGATGGTTAGCCGCAAGTGCCTTCCACCAA
TGTATGTTTTGTTGGTTGTGACACAGTTTCCTTAATAGAACATCATTCTG
AACATGGCAGTCCTCTCATCTCAATGTCATTTCACTCCTGATCCTGGTCC
AAAGTATGGCAGAAAGCCCACCAATGAGTCTTGAGTGCCCCCTTACTGTT
TTGCATCCTCTGCATTGTGCTGCCATCATCGTATTAAACTACTTGCGCGT
ATGGTTTGAGGTCCTGCTCCAACGGCTGCTCTACATTCCTCTGCAGAGTA
CGCTGCATGCAGCTCTGTCTGCAACCATGGCAATGAGTAATCTGCATGGC
AACAAGATGGATAAGAACCCTTTTTGTGGTTACATTCTATGGGTATGCTT
TGACAATGCACTCAATGCCCTGTCAGGACATGACCTGGGTCCATGTTACA
GCAACTGCATCAAGGTTAGGGTTTGGGTTTGGGCTCACGACGATCACTGC
GCTTGCGCTGGTGCTGCCGCTGGTGCTGTTGCTGCTGCCCGCTGCTCGTT
GCTGCCACAGACGCTGTATTTAAGTGCTTGATCAAAGAAGTGGAGCAAGC
TCAGGGGGGCACTGTTGAAGAAGAGCCCCCTGCTGAGGGGCAGAAGTGCA
TCATTGCCTGAGGAACACTCAGGGAACCATCTACGATGCACTTACAGTCA
TGCACACGATACATGCATGTACATGGCGCTGTAAAGACACAAGCTGATGA
TGTGCGCATAGA

Coding sequence (CDS) from alignment at Contig_109:502683..506344+

>mRNA_13027 ID=mRNA_13027|Name=jgi.p|Trimin1|6649|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=612bp|location=Sequence derived from alignment at Contig_109:502683..506344+ (Tribonema minus UTEX_B_3156 )
ATGCAGGCCCCAGGAGCCGGCTCTGCCGGGAGGGGCGAAACAGTGCAGGT
AGCCAAGCGGAAAATCGCCCTGCTGGGCTTCACCGGGGTGGGCAAGACCT
CGCTGGCAACTCGATTTGTGCAGGGCTCCTTTGTGGACATGTATAATCCC
ACAATCACAAACACCTTCCACACAAGCGTAAACTTTGGCAAGAAAACGCT
CGCGACAGAGATTCTGGACACCGCCGGTCTGGACGGGCACACTCAGATAT
CAAGACATGCCTCCGTGGGAGTACACGGCTATCTCATGCTGTACAGCACC
ATCAGCAGGAACAGCTTCGAGAACATCAAGAATATCAACGAGAACCTCAT
GCATACGCTGGGAGATCTGCCGGATGTGGCCAGGGTGCTGGTGGGGACCA
TGATGGATCTGTCTGATCAGCGACAGATCACCACTCAGCAGGGACAGGAA
CTGGCCAGGGAGTGGGGTGTGCCCTTCATGGAATGTTCAGCCAAGGAAAA
CATCAACATAGACGCTGTATTTAAGTGCTTGATCAAAGAAGTGGAGCAAG
CTCAGGGGGGCACTGTTGAAGAAGAGCCCCCTGCTGAGGGGCAGAAGTGC
ATCATTGCCTGA