mRNA_12942 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: A0A835YLS8_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLS8_9STRA) HSP 1 Score: 491 bits (1263), Expect = 2.160e-175 Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 1 Query: 1 SSLSSQQIRAEAAADAAWARQPGIVKALQPPPFDAAAPPDLSSTEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAALASVENTRSFSRAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTAPCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 738 SSLSSQQIRAEAAADAAWARQPGIVKALQPPPFDAAAPPDLSSTEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAALASVENTRSFSRAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTAPCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL Sbjct: 1 SSLSSQQIRAEAAADAAWARQPGIVKALQPPPFDAAAPPDLSSTEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAALASVENTRSFSRAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTAPCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 246
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: D8LNU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNU1_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.110e-20 Identity = 77/207 (37.20%), Postives = 101/207 (48.79%), Query Frame = 1 Query: 1 SSLSSQQIRAEAAADAAWARQPGIVKALQPPPFDA---------AAPPDLSSTEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAALASV------ENTRSFSRAG-LHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTF--IGPELGVPRAVKPASSGDTAPCH-----------TLRQGGRSLELQWVRGLFHDTASG 534 S+L + R + + AWA+ PG + L PPF+ A+ L S E YL +R W + A R +SHLLTYPLTLAA L E T S R L V C+GARAE+T+PP W EALF+ L D RL+ IGPELG+P V A+ TA C + G R+ ++ W R + +A G Sbjct: 31 STLELPEARKQGEENKAWAKTPGARQVLDQPPFEGEDGDIGAARASACMLESLEGYLQARRWPY---REEPARRFLSHLLTYPLTLAAGLREARIKQQPEYTNSDGRRNKLAVVCLGARAESTMPPAYWREALFA---LPDVSRLSLHLIGPELGLPPGVVAAARPGTAACDGAGTIGPISTAVISVGARTADIAWTRAMVGSSAGG 231
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: K8YPB9_NANGC (Mrna processing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YPB9_NANGC) HSP 1 Score: 96.7 bits (239), Expect = 7.800e-20 Identity = 92/290 (31.72%), Postives = 123/290 (42.41%), Query Frame = 1 Query: 31 EAAADAAWARQPGIVKALQPP-----------PFDAAAPPDLSSTEAYLASRFWTN-----ILPSDAAAMRIISHLLTYPLTLAAALASVENT-RSFSRAG-----LHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTAPCHTLRQGGRSLELQWVRGLFH----DTASGRALRHDSC----------------------------NRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 738 EA +A W +P + +QPP P + PP L E Y+ R W +L S +R++SHLL+YPLTLA L S+ + S ++AG HV IGARAEATLP W E L L L +GPE+ P S P R L + +G++H D S L S ++ S V A VLF+PGLGH L+ W+ T + A++ P++ TAHS D RDVAWL Sbjct: 15 EAREEALWLSKPTNSRLIQPPAPSAFHAAGEGPSSTSPPPTL---EEYVRRRQWAGKNTETLLASPG--LRVLSHLLSYPLTLAHYLPSLHGSDTSSAKAGSPGEVCHVAIIGARAEATLPDAWWQEVLCLQPGLFC---LHMVGPEVYDPATRAGRESVRLDPQ-------RQLWMHRRQGMYHVLAPDLVSSFRLSPSSSPPASSASSPGVAATPAPTASSLDPVAPSQASDASPAAVSAAVLFNPGLGHPALAKAWKPTLQCLQAAKVPILWTAHSAEDRDRDVAWL 289
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: A0A7S2S4T4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S4T4_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.590e-17 Identity = 80/258 (31.01%), Postives = 115/258 (44.57%), Query Frame = 1 Query: 16 QQIRAEAAADAAWARQPGIVKALQPPPFDAA-APPDLSST------EAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAALASVENTRSFSRAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPEL--GVPRAVKPASSGD------TAPCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQT--PVILTAHSEGDARRDVAWL 738 ++ R + D AWA+ P +AL+PPP A A P L+ + YL R W + A R++SH+L+YPL+LA + + S L V C GAR EA LPP W E L +C L L F+GP++ G PR ++ +S T P TL +LE A AL H + +PGLGH L GW A+ + ++ P+++T+H D RD+ L Sbjct: 47 EESRRQLLEDTAWAKSPAGREALRPPPPXATPATPRLADLIQAGDLDGYLRYRGWPPDAVASPAGRRVLSHVLSYPLSLARGIHKL-GLASGDEGRLRVLCAGARGEAGLPPQWWMELLHACPAL-SHVTLHFVGPQVQEGPPRVLERPTSAQGPGHHRTTPTLTLASSQTTLE-----------AVDDALLHPP---------PTTLVWMSNPGLGHPSLRKGWAASLTRLAQAEPRLPLLVTSHHALDQERDLEAL 282
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: A0A5D6XLE9_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLE9_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 1.970e-16 Identity = 67/192 (34.90%), Postives = 97/192 (50.52%), Query Frame = 1 Query: 187 AMRIISHLLTYPLTLA---AALASVENTRSFSRAGLHVECIGARAEATLPPHLWAEALF--SCGRLLDGGRLTFIGPELGVPRAVK---PASSGDTAPCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 738 A+R++S +Y +TLA AL ++S A +HV IGARAEAT+P HLW E F R D +T +G + R + P S AP R GR + L+ + GL+H+ R ++ DA VLF+PG+GH L W+ T ++AS P++L++ S+ D RDVA L Sbjct: 129 ALRLLSAAYSYVMTLAHYLPALRQASGSQSADVARIHV--IGARAEATMPRHLWDELPFFHPSVRAFD---VTLVGDHVPAVRQQQQKPPQPSSSAAPEAEPR--GRVVRLETINGLYHEPHVVERTR---------AMPPPDALVLFNPGVGHPFLKARWRPTLAALLASGKPILLSSFSQADQDRDVAAL 304
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: A0A4D9CVF1_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVF1_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.580e-15 Identity = 92/290 (31.72%), Postives = 120/290 (41.38%), Query Frame = 1 Query: 31 EAAADAAWARQPGIVKALQPP-----------PFDAAAPPDLSSTEAYLASRFWTN-----ILPSDAAAMRIISHLLTYPLTLAAALASVENTRSFSR-----AGL-HVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTAPCHTLRQGGRSLELQWVRGLFHDTA-------------SGRALRHDS-------------------CNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 738 EA +A W +P + +QPP P + PP L E Y+ R W +L S +R++SHLL+YPLTLA L S+ + + S G+ HV IGARAEATLP W E L L L +GPE+ P S P R L + +GL+H A S AL S S + A VLF+PGLGH L+ W+ T + A++ PV+ TAHS D RDVA L Sbjct: 828 EARDEALWLSKPTNSRLIQPPAPSAFHDAGEGPSSTSPPPTL---EEYVRRRQWAGKSTETLLASPG--LRVLSHLLSYPLTLAHYLPSLYGSDTASAKVGSPGGVSHVAIIGARAEATLPDAWWQEVLCMQPGLFC---LHMVGPEVYDPATRAGRESVRLDPQ-------RQLWMHRRQGLYHVLAPDLVSSFRLSPSPSPPALSASSPGVAATXXXXXXXXXXXXXXXXXXXSPAALSAAVLFNPGLGHPALAEAWKPTLQCLQAAKVPVLWTAHSAEDRDRDVACL 1102
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: A0A484DZ59_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZ59_BRELC) HSP 1 Score: 78.2 bits (191), Expect = 3.970e-13 Identity = 60/206 (29.13%), Postives = 102/206 (49.51%), Query Frame = 1 Query: 151 RFWTNILP---------SDAAAMRIISHLLTYPLTLAAALAS-VENTRSFSRAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTAPCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 738 R WT+ L D A+R++S T+ +T++ ++ ++ ++ + IGARAEAT+P +LW E F + +L IG VPR TA + S++L+ + GL+H ++ +R S A+VLF+PG+GHLHL W+ T +++S+ P+++T+ S D +RD+A L Sbjct: 121 RSWTDYLKLFRPDNRFLKDVRALRLLSSAYTFVMTISRFFPELIDPDQANNKDKFQIHVIGARAEATMPHYLWNELSFFHPQQQFWIKL--IGDH--VPR---------TASKTQMTNINSSIQLEMINGLYHTI--------EATHRENPS-----AFVLFNPGIGHLHLRANWEPTLLTILSSKRPILITSFSLEDQQRDLAVL 300
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: A0A482SGE6_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SGE6_9ARCH) HSP 1 Score: 73.9 bits (180), Expect = 6.320e-12 Identity = 58/205 (28.29%), Postives = 97/205 (47.32%), Query Frame = 1 Query: 124 SSTEAYLASRFWTNILPSDAAAMRIISHLLTYPLTLAAALASVENTRSFSRAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTAPCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 738 SS +AY+++R + P + RI+S LLT+PLTL+ AL+++ L++ +GAR+EA+LP W E ++S + + +GP + P T Q +LE L HD L H C++ + + +VLF PG G + W T ++ ++ PV TA+S D ++D+ +L Sbjct: 36 SSMDAYISARLASAGQPGSVLSHRILSSLLTFPLTLSHALSTLF---PHPIPKLNIVVLGARSEASLPASWWREVMYSSPPHIQEVCVKMVGPGQKHLKNHPPLQQTLTWTSSESTQRSMTLETGKDISLLHD------LPH--CHQL---LMEANLFVLFHPGFGTESVQPLWHPTLQMLWHTRKPVFCTAYSPSDLQKDLQYL 226
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: A0A7S3MD01_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MD01_9STRA) HSP 1 Score: 68.2 bits (165), Expect = 5.730e-10 Identity = 56/193 (29.02%), Postives = 92/193 (47.67%), Query Frame = 1 Query: 178 DAAAMRIISHLLTYPLTLAAALASVENTRSFSRAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAV--KPASSGDTAPCHTLRQGGRSLELQWV----RGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPVILTAHSEGDARRDVAWL 738 D AMR +S LLT+PLTLA L+ + L+V +GAR+E++LP W E L + + + +GP L ++V +S D P ++ SL + + L +D ++ H N+ + D +VLF+PG G+ L W+ T ++ + P++ TA+ E D RD+ L Sbjct: 63 DPPAMRALSSLLTFPLTLAYGLSKIF-PEEHKIETLNVLVVGARSESSLPMVWWREMLCANSSAVTHN-IRMVGPGLQQNKSVYKTATTSVDIKPFYSEANKSLSLVNNYTVTADKKLHNDFSALH--EHPDLNKL---LRWADVFVLFNPGYGNDTLKALWEPTMHQLLHTHKPILCTAYGEHDLHRDLQAL 248
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Match: A0A6S8E935_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S8E935_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 3.510e-8 Identity = 53/182 (29.12%), Postives = 83/182 (45.60%), Query Frame = 1 Query: 193 RIISHLLTYPLTLAAALASVENTRSFS---RAGLHVECIGARAEATLPPHLWAEALFSCGRLLDGGRLTFIGPELGVPRAVKPASSGDTAPCHTLRQGGRSLELQWVRGLFHDTASGRALRHDSCNRTEGSIHTVDAYVLFSPGLGHLHLSTGWQATADLVMASQTPV-ILTAHSEGDARRD 726 R++S LL+YPLTLA L N +F+ + L + +GARAEATLPP W E +F+ L FIGP++ V K GD L++++ R L+ +T S+ T D + L + G+G+ + WQ T + + V + T+ ++ D D Sbjct: 66 RVLSKLLSYPLTLARNL----NHNAFNLEYKDSLEIHVVGARAEATLPPIYWNE-IFTTRYPAKTVNLVFIGPQVNVALDGKQKLFGDC------------LQMEFRRKLYEET----------------SLSTPDVFYLCNSGIGNEFENGYWQKTFQQKLLNSNSVGLFTSFNKSDFEAD 214 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150973 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12942 ID=mRNA_12942|Name=jgi.p|Trimin1|150973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=738bp|location=Sequence derived from alignment at Contig_69:476798..477535- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TCGTCATTATCATCTCAGCAAATTCGTGCGGAGGCAGCAGCGGATGCAGCback to top protein sequence of jgi.p|Trimin1|150973 >Trimin1|150973|gw1.69.103.1 ID=Trimin1|150973|gw1.69.103.1|Name=jgi.p|Trimin1|150973|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=246bp SSLSSQQIRAEAAADAAWARQPGIVKALQPPPFDAAAPPDLSSTEAYLASback to top mRNA from alignment at Contig_69:476798..477535- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12942 ID=mRNA_12942|Name=jgi.p|Trimin1|150973|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=738bp|location=Sequence derived from alignment at Contig_69:476798..477535- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_69:476798..477535- >mRNA_12942 ID=mRNA_12942|Name=jgi.p|Trimin1|150973|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=738bp|location=Sequence derived from alignment at Contig_69:476798..477535- (Tribonema minus UTEX_B_3156 )back to top |