mRNA_12910 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|132206
Unique NamemRNA_12910
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|132206 vs. uniprot
Match: A0A835YLU1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLU1_9STRA)

HSP 1 Score: 312 bits (800), Expect = 4.460e-108
Identity = 147/147 (100.00%), Postives = 147/147 (100.00%), Query Frame = 1 
Query:    1 FFTSKHARIFLNSMCYIQQGLLSDPPHMDMYVKVRTLQTGLVVHRRLRSTSSLEGYHLHLRQTLVAGAVAAGPRWLESVTNTFDFRWCVKALLCAGALPAWIRHYDLELYDVIYDVAQALYGDGHQVLPGHQRTKQQNVIVRHGMHF 441
            FFTSKHARIFLNSMCYIQQGLLSDPPHMDMYVKVRTLQTGLVVHRRLRSTSSLEGYHLHLRQTLVAGAVAAGPRWLESVTNTFDFRWCVKALLCAGALPAWIRHYDLELYDVIYDVAQALYGDGHQVLPGHQRTKQQNVIVRHGMHF
Sbjct:    1 FFTSKHARIFLNSMCYIQQGLLSDPPHMDMYVKVRTLQTGLVVHRRLRSTSSLEGYHLHLRQTLVAGAVAAGPRWLESVTNTFDFRWCVKALLCAGALPAWIRHYDLELYDVIYDVAQALYGDGHQVLPGHQRTKQQNVIVRHGMHF 147
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BLAST of jgi.p|Trimin1|132206 vs. uniprot
Match: A0A835Z4C1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4C1_9STRA)

HSP 1 Score: 269 bits (687), Expect = 7.160e-89
Identity = 125/147 (85.03%), Postives = 136/147 (92.52%), Query Frame = 1 
Query:    1 FFTSKHARIFLNSMCYIQQGLLSDPPHMDMYVKVRTLQTGLVVHRRLRSTSSLEGYHLHLRQTLVAGAVAAGPRWLESVTNTFDFRWCVKALLCAGALPAWIRHYDLELYDVIYDVAQALYGDGHQVLPGHQRTKQQNVIVRHGMHF 441
            FFTSKHA+IF NSM YI+QGLLSDPPHMDMY +VRTLQTGLVV+R LRSTS LEGYHLHLRQ LVAGAVA+GPRWLESVTNTFDFRWCVKALL AGALPAW++HYDLELYDVI+DV + LYGDGHQVL GHQRT+QQ V+VRHGMHF
Sbjct:  130 FFTSKHAKIFDNSMGYIKQGLLSDPPHMDMYARVRTLQTGLVVYRSLRSTSPLEGYHLHLRQALVAGAVASGPRWLESVTNTFDFRWCVKALLRAGALPAWVKHYDLELYDVIFDVVKTLYGDGHQVLRGHQRTQQQPVVVRHGMHF 276
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BLAST of jgi.p|Trimin1|132206 vs. uniprot
Match: A0A835Z1S4_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1S4_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.060e-63
Identity = 100/148 (67.57%), Postives = 119/148 (80.41%), Query Frame = 1 
Query:    1 FFTSKHARIFLNSMCYIQQGLLSDPPHMDMYVKVRTLQTGLVVHRRLRSTSSLEGYHLHLRQTLVAGAVAAGPRWLESVTNTFDFRWCVKALLCAGALPAWIRHYDLELYDVIYDVAQALYGDGHQVLPGHQRT-KQQNVIVRHGMHF 441
            FF +KHA IF NSM YI++G LSDPP MDMYV+ +TL TGLVV+R LRSTS LEGYHLHLRQTL AGAV + PRW E VTNTFDFRWCV ALL A  LPAWIR ++LE+YD+IYD+ + ++G+G QVLPGH  T +QQ + +RHG HF
Sbjct:  151 FFNAKHASIFKNSMWYIKRGYLSDPPAMDMYVEAKTLATGLVVYRCLRSTSPLEGYHLHLRQTLAAGAVTSSPRWQECVTNTFDFRWCVAALLRARLLPAWIRPFNLEVYDIIYDLGEKVHGNGEQVLPGHPHTVQQQPLALRHGFHF 298
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BLAST of jgi.p|Trimin1|132206 vs. uniprot
Match: A0A0M0K3G0_9EUKA (R3H domain-containing protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3G0_9EUKA)

HSP 1 Score: 136 bits (343), Expect = 1.880e-34
Identity = 63/148 (42.57%), Postives = 97/148 (65.54%), Query Frame = 1 
Query:    1 FFTSKHARIFLNSMCYIQQGLLSDPPHMDMYVKVRTLQTGLVVHRRLRSTSSLEGYHLHLRQTLVAGAVAAGPRWLESVTNTFDFRWCVKALLCAGALPAWIRHYDLELYDVIYDVAQALY-GDGHQVLPGHQRTKQQNVIVRHGMHF 441
            FF++ H +  +  + Y+  G LSD P + +Y   RTL+TG V+ R LRS+S+LEGYH      + A    AG  W+E+ +N FDFRWCV+AL  AG +P+W+R ++L L D ++D+A+AL+ G G   LPG +RT+  +++VR G ++
Sbjct:  874 FFSAGHQQRCITELQYVAYGWLSDHPKIPLYRAGRTLKTGFVLSRCLRSSSALEGYHAPFNDAMAASGHKAGLDWMEASSNEFDFRWCVRALRSAGIIPSWVRMFNLALIDEVWDLAEALFEGGGALALPGWRRTRLMSLLVRQGFYY 1021
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BLAST of jgi.p|Trimin1|132206 vs. uniprot
Match: F0Y4F3_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4F3_AURAN)

HSP 1 Score: 134 bits (337), Expect = 1.280e-33
Identity = 67/150 (44.67%), Postives = 93/150 (62.00%), Query Frame = 1 
Query:    1 FFTSKHARIFLNSMCYIQQGLLSDPPHMDMYVKVRTLQTGLVVHRRLRSTSSLEGYHLHLRQTLVAGAVAAGPRWLESVTNTFDFRWCVKALLCAGALPAWIRHYDLELYDVIYDVAQALYGDGHQVL---PGHQRTKQQNVIVRHGMHF 441
            FF + H + F N M Y+++G LSD P +++YV  + L TG VV+R LR++S LEGYHLHLR+T  A ++ AGPRW + V N FDFRW ++AL   GALP   RHYD+ L D +    + L   G       PG +RT     ++ HG+H+
Sbjct: 3372 FFRAGHKKRFDNEMRYVRKGYLSDHPDVELYVPKKKLATGFVVYRCLRTSSPLEGYHLHLRETRKASSLKAGPRWHDVVMNEFDFRWIIRALKQRGALPHRFRHYDVFLEDKLAAQVEGLVERGVMAASPRPGWRRTPYTKPVLYHGIHY 3521
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BLAST of jgi.p|Trimin1|132206 vs. uniprot
Match: A0A835YTS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS6_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.820e-22
Identity = 47/66 (71.21%), Postives = 53/66 (80.30%), Query Frame = 1 
Query:    1 FFTSKHARIFLNSMCYIQQGLLSDPPHMDMYVKVRTLQTGLVVHRRLRSTSSLEGYHLHLRQTLVA 198
            FF +KHA IF NSM YI++G LSDPP MDMYV+ +TL TGLVV+R LRSTS LEGYHLHLRQ   A
Sbjct:  120 FFNAKHASIFKNSMWYIKRGYLSDPPAMDMYVEAKTLATGLVVYRCLRSTSPLEGYHLHLRQVYKA 185
[Close]
BLAST of jgi.p|Trimin1|132206 vs. uniprot
Match: A0A835Z5P5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 6.470e-12
Identity = 34/52 (65.38%), Postives = 39/52 (75.00%), Query Frame = 1 
Query:  265 VKALLCAGALPAWIRHYDLELYDVIYDVAQALYGDGHQVLPGHQRTKQQNVI 420
            V+  L    LP   RHYDLELYD+I+DVA+ALYGD H VLP HQRT+QQ VI
Sbjct:   83 VQGRLAYPQLPPAGRHYDLELYDIIFDVAKALYGDKHHVLPDHQRTQQQPVI 134
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|132206 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A835YLU1_9STRA4.460e-108100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z4C1_9STRA7.160e-8985.03Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z1S4_9STRA1.060e-6367.57Uncharacterized protein n=3 Tax=Tribonema minus Ta... [more]
A0A0M0K3G0_9EUKA1.880e-3442.57R3H domain-containing protein (Fragment) n=1 Tax=C... [more]
F0Y4F3_AURAN1.280e-3344.67Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835YTS6_9STRA4.820e-2271.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z5P5_9STRA6.470e-1265.38Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_69contigContig_69:140804..141797 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|132206|gw1.69.22.1
KEGG TC9.B.188.1.2
BRITEko00000,ko01000,ko02000,ko03400,ko04131
KEGG koko:K20347,ko:K20777
EC3.1.11.1
Description3'-5' exonuclease activity
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0666@1|root,KOG1692@1|root,KOG2615@1|root,KOG4373@1|root,KOG1692@2759|Eukaryota,KOG2615@2759|Eukaryota,KOG4177@2759|Eukaryota,KOG4373@2759|Eukaryota
Evalue2.11e-34
Seed ortholog44056.XP_009035203.1
Hectar predicted targeting categoryother localisation
TranscriptId132528
TrackFilteredModels1
ProteinId132206
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132206gene_12910Tribonema minus UTEX_B_3156 geneContig_69 140804..141797 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12910_1exon_12910_1Tribonema minus UTEX_B_3156 exonContig_69 140804..140989 +
exon_12910_2exon_12910_2Tribonema minus UTEX_B_3156 exonContig_69 141543..141797 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12910CDS_12910Tribonema minus UTEX_B_3156 CDSContig_69 140804..140989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|132206Trimin1|132206|gw1.69.22.1Tribonema minus UTEX_B_3156 polypeptideContig_69 140804..141797 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12910 ID=mRNA_12910|Name=jgi.p|Trimin1|132206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=441bp|location=Sequence derived from alignment at Contig_69:140804..141797+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCTTCACCTCCAAGCATGCCAGGATCTTCCTCAACTCCATGTGCTACAT
CCAGCAGGGACTGCTGTCCGATCCTCCACACATGGACATGTATGTGAAGG
TGCGGACGCTGCAGACAGGTCTGGTGGTTCATAGGCGCCTTCGATCCACG
TCATCACTGGAGGGATACCACCTGCACCTGCGACAGACACTCGTGGCGGG
CGCAGTAGCGGCAGGCCCTAGGTGGCTCGAGAGTGTGACCAACACCTTCG
ACTTCAGGTGGTGCGTCAAGGCTCTGCTGTGTGCAGGTGCACTGCCTGCC
TGGATCAGGCACTATGATCTTGAGCTCTACGATGTCATCTATGACGTTGC
TCAAGCCCTCTATGGAGATGGGCACCAAGTGCTGCCGGGCCACCAGCGCA
CCAAGCAGCAGAATGTCATTGTGAGGCATGGGATGCACTTT
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protein sequence of jgi.p|Trimin1|132206

>Trimin1|132206|gw1.69.22.1 ID=Trimin1|132206|gw1.69.22.1|Name=jgi.p|Trimin1|132206|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=147bp
FFTSKHARIFLNSMCYIQQGLLSDPPHMDMYVKVRTLQTGLVVHRRLRST
SSLEGYHLHLRQTLVAGAVAAGPRWLESVTNTFDFRWCVKALLCAGALPA
WIRHYDLELYDVIYDVAQALYGDGHQVLPGHQRTKQQNVIVRHGMHF
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mRNA from alignment at Contig_69:140804..141797+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12910 ID=mRNA_12910|Name=jgi.p|Trimin1|132206|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=994bp|location=Sequence derived from alignment at Contig_69:140804..141797+ (Tribonema minus UTEX_B_3156 )
TTCTTCACCTCCAAGCATGCCAGGATCTTCCTCAACTCCATGTGCTACAT
CCAGCAGGGACTGCTGTCCGATCCTCCACACATGGACATGTATGTGAAGG
TGCGGACGCTGCAGACAGGTCTGGTGGTTCATAGGCGCCTTCGATCCACG
TCATCACTGGAGGGATACCACCTGCACCTGCGACAGGTAAATATTATCAC
TAACTGAAAGGCGTGGCACTCTTTGCACATGCTGTGTTGGAGCGGCTTTC
TCGAAGTGCATATCACGGCCGTGTCGCCTCCTTGTTTAGCGACTTGACGA
CTGCCTGTATGAACTGCCATCTACATGATCTTCAGGCACTGTGTACCCAC
AAGTCGTCGAGGCAGCATTTGCCTGCCAGCTGCCACAGTATGGTGATTAT
TTGCAATTTCATGAGCGTCCATCACTGCGGCACTCTTGAAGTTGTCACTG
TTTTCTTTCCTTGAGGCTGCTTAGGGTTAGGATTGGGCTTAGTAATACTA
GTAGGGTTGGGCTGCTGCTTACTCGCTGTTGCTCCTACGGTCGCTGCCAG
ACAACATATGCTGGTGGACGCAAGTGTCATGCTGTCCCTGCAGGGTAAGG
GTGACGGTTTGGGTTAGGGTTACGGTTTGGGTAAAGGTTGCTAATCATTA
TAGGCTGCTGCTCCCTGCGTAACGTTTGCTGCTACTCTAACGCTTACTAC
ATGAAACATGTGCTGGTGGTCTTGTTGTGCTATACGCAGACACTCGTGGC
GGGCGCAGTAGCGGCAGGCCCTAGGTGGCTCGAGAGTGTGACCAACACCT
TCGACTTCAGGTGGTGCGTCAAGGCTCTGCTGTGTGCAGGTGCACTGCCT
GCCTGGATCAGGCACTATGATCTTGAGCTCTACGATGTCATCTATGACGT
TGCTCAAGCCCTCTATGGAGATGGGCACCAAGTGCTGCCGGGCCACCAGC
GCACCAAGCAGCAGAATGTCATTGTGAGGCATGGGATGCACTTT
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Coding sequence (CDS) from alignment at Contig_69:140804..141797+

>mRNA_12910 ID=mRNA_12910|Name=jgi.p|Trimin1|132206|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=441bp|location=Sequence derived from alignment at Contig_69:140804..141797+ (Tribonema minus UTEX_B_3156 )
TTCTTCACCTCCAAGCATGCCAGGATCTTCCTCAACTCCATGTGCTACAT
CCAGCAGGGACTGCTGTCCGATCCTCCACACATGGACATGTATGTGAAGG
TGCGGACGCTGCAGACAGGTCTGGTGGTTCATAGGCGCCTTCGATCCACG
TCATCACTGGAGGGATACCACCTGCACCTGCGACAGACACTCGTGGCGGG
CGCAGTAGCGGCAGGCCCTAGGTGGCTCGAGAGTGTGACCAACACCTTCG
ACTTCAGGTGGTGCGTCAAGGCTCTGCTGTGTGCAGGTGCACTGCCTGCC
TGGATCAGGCACTATGATCTTGAGCTCTACGATGTCATCTATGACGTTGC
TCAAGCCCTCTATGGAGATGGGCACCAAGTGCTGCCGGGCCACCAGCGCA
CCAAGCAGCAGAATGTCATTGTGAGGCATGGGATGCACTTT
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