mRNA_12887 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A835YNM2_9STRA (FA_desaturase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM2_9STRA) HSP 1 Score: 120 bits (300), Expect = 1.160e-34 Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 Query: 1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL Sbjct: 1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 56
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: D7G102_ECTSI (Fatty acid desaturase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G102_ECTSI) HSP 1 Score: 90.9 bits (224), Expect = 5.580e-23 Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1 Query: 4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168 GGINYQIEHHLFPSM HM YA +AP+V+ C EF IPY+AH TLWSAYASYL+ L Sbjct: 2 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHL 56
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE) HSP 1 Score: 89.7 bits (221), Expect = 1.420e-19 Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1 Query: 4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168 GGINYQIEHHLFPSM HM YA +AP+V+ C EF IPY+AH TLW+AYASYL+ L Sbjct: 630 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPYNAHPTLWTAYASYLKHL 684
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A7Y5LVD3_9BACT (Acyl-CoA desaturase n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A7Y5LVD3_9BACT) HSP 1 Score: 79.3 bits (194), Expect = 3.230e-16 Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1 Query: 4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168 GG+NYQ+EHHLFP +CH+HY R+A +VR TCAEF +PYSA+ +SA AS+ R L Sbjct: 258 GGLNYQVEHHLFPRICHLHYPRIARIVRETCAEFGVPYSANPGFFSAIASHYRWL 312
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A388LMM3_CHABU (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LMM3_CHABU) HSP 1 Score: 77.0 bits (188), Expect = 4.170e-15 Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1 Query: 4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSA 144 GG+NYQ+EHHLFP MCH+HY + P+VRATC EF +PY A+ + W+A Sbjct: 682 GGLNYQLEHHLFPGMCHLHYPIIQPIVRATCKEFGVPYHAYPSFWAA 728
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A5E8CJX7_9ZZZZ (Fatty acid desaturase n=1 Tax=seawater metagenome TaxID=1561972 RepID=A0A5E8CJX7_9ZZZZ) HSP 1 Score: 76.6 bits (187), Expect = 5.200e-15 Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1 Query: 1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168 FGGINYQIEHHLFPSMCH+HY +AP+V+ TC EF I Y H +++ + ++SL Sbjct: 359 FGGINYQIEHHLFPSMCHVHYPEIAPIVKKTCQEFNIEYVEHSSVYDSLKDVIKSL 414
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A6C0KIQ1_9ZZZZ (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KIQ1_9ZZZZ) HSP 1 Score: 76.3 bits (186), Expect = 6.670e-15 Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1 Query: 1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168 FGGINYQIEHHLFP+MCH+HYA++A +VR C I Y +DTL AYAS+ +S+ Sbjct: 340 FGGINYQIEHHLFPNMCHVHYAKIAHIVREFCESHHIKYVHYDTLGDAYASFQKSM 395
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: L0D6F2_SINAD (Fatty acid desaturase n=3 Tax=Singulisphaera TaxID=466152 RepID=L0D6F2_SINAD) HSP 1 Score: 75.5 bits (184), Expect = 1.130e-14 Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168 GG+NYQIEHHLFP +CH+HY ++P+V ATC +F IPY H T A +S++R L Sbjct: 296 GGLNYQIEHHLFPKVCHVHYPAISPIVEATCKDFGIPYQIHPTFRDALSSHVRWL 350
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A0V0QTF1_PSEPJ (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QTF1_PSEPJ) HSP 1 Score: 75.5 bits (184), Expect = 1.360e-14 Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 1 Query: 1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168 FGGINYQIEHHLFPSMC++H +++P+V+ TC EF +PY +H ++ SAY +L+ + Sbjct: 376 FGGINYQIEHHLFPSMCNVHLNQISPIVQETCKEFNVPYVSHISVISAYKDFLKGI 431
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A7C7CKI7_9FLAO (Acyl-CoA desaturase n=2 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7CKI7_9FLAO) HSP 1 Score: 73.2 bits (178), Expect = 1.810e-14 Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1 Query: 4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168 GG+NYQ+EHHLFP +CH+HY+++AP+V T EF +PY T WSA S+ R + Sbjct: 134 GGLNYQVEHHLFPKVCHIHYSKLAPIVMQTAREFNVPYYDQPTFWSALKSHFRMM 188 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12887 ID=mRNA_12887|Name=jgi.p|Trimin1|150961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_73:598970..599137+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. TTCGGCGGCATCAACTACCAGATCGAGCACCACCTCTTCCCGAGCATGTGback to top protein sequence of jgi.p|Trimin1|150961 >Trimin1|150961|gw1.73.89.1 ID=Trimin1|150961|gw1.73.89.1|Name=jgi.p|Trimin1|150961|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=56bp FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYAback to top mRNA from alignment at Contig_73:598970..599137+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12887 ID=mRNA_12887|Name=jgi.p|Trimin1|150961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_73:598970..599137+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_73:598970..599137+ >mRNA_12887 ID=mRNA_12887|Name=jgi.p|Trimin1|150961|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=168bp|location=Sequence derived from alignment at Contig_73:598970..599137+ (Tribonema minus UTEX_B_3156 )back to top |