mRNA_12887 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150961
Unique NamemRNA_12887
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A835YNM2_9STRA (FA_desaturase domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNM2_9STRA)

HSP 1 Score: 120 bits (300), Expect = 1.160e-34
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1
Query:    1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168
            FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL
Sbjct:    1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 56          
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: D7G102_ECTSI (Fatty acid desaturase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G102_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 5.580e-23
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168
            GGINYQIEHHLFPSM HM YA +AP+V+  C EF IPY+AH TLWSAYASYL+ L
Sbjct:    2 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACEEFNIPYNAHPTLWSAYASYLKHL 56          
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A6H5KKY7_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY7_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.420e-19
Identity = 40/55 (72.73%), Postives = 46/55 (83.64%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168
            GGINYQIEHHLFPSM HM YA +AP+V+  C EF IPY+AH TLW+AYASYL+ L
Sbjct:  630 GGINYQIEHHLFPSMSHMLYAEIAPIVKDACKEFNIPYNAHPTLWTAYASYLKHL 684          
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A7Y5LVD3_9BACT (Acyl-CoA desaturase n=1 Tax=Candidatus Brocadiae bacterium TaxID=2517210 RepID=A0A7Y5LVD3_9BACT)

HSP 1 Score: 79.3 bits (194), Expect = 3.230e-16
Identity = 34/55 (61.82%), Postives = 44/55 (80.00%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168
            GG+NYQ+EHHLFP +CH+HY R+A +VR TCAEF +PYSA+   +SA AS+ R L
Sbjct:  258 GGLNYQVEHHLFPRICHLHYPRIARIVRETCAEFGVPYSANPGFFSAIASHYRWL 312          
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A388LMM3_CHABU (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LMM3_CHABU)

HSP 1 Score: 77.0 bits (188), Expect = 4.170e-15
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSA 144
            GG+NYQ+EHHLFP MCH+HY  + P+VRATC EF +PY A+ + W+A
Sbjct:  682 GGLNYQLEHHLFPGMCHLHYPIIQPIVRATCKEFGVPYHAYPSFWAA 728          
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A5E8CJX7_9ZZZZ (Fatty acid desaturase n=1 Tax=seawater metagenome TaxID=1561972 RepID=A0A5E8CJX7_9ZZZZ)

HSP 1 Score: 76.6 bits (187), Expect = 5.200e-15
Identity = 32/56 (57.14%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168
            FGGINYQIEHHLFPSMCH+HY  +AP+V+ TC EF I Y  H +++ +    ++SL
Sbjct:  359 FGGINYQIEHHLFPSMCHVHYPEIAPIVKKTCQEFNIEYVEHSSVYDSLKDVIKSL 414          
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A6C0KIQ1_9ZZZZ (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0KIQ1_9ZZZZ)

HSP 1 Score: 76.3 bits (186), Expect = 6.670e-15
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168
            FGGINYQIEHHLFP+MCH+HYA++A +VR  C    I Y  +DTL  AYAS+ +S+
Sbjct:  340 FGGINYQIEHHLFPNMCHVHYAKIAHIVREFCESHHIKYVHYDTLGDAYASFQKSM 395          
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: L0D6F2_SINAD (Fatty acid desaturase n=3 Tax=Singulisphaera TaxID=466152 RepID=L0D6F2_SINAD)

HSP 1 Score: 75.5 bits (184), Expect = 1.130e-14
Identity = 31/55 (56.36%), Postives = 41/55 (74.55%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168
            GG+NYQIEHHLFP +CH+HY  ++P+V ATC +F IPY  H T   A +S++R L
Sbjct:  296 GGLNYQIEHHLFPKVCHVHYPAISPIVEATCKDFGIPYQIHPTFRDALSSHVRWL 350          
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A0V0QTF1_PSEPJ (Cytochrome b5-like heme/steroid binding domain n=1 Tax=Pseudocohnilembus persalinus TaxID=266149 RepID=A0A0V0QTF1_PSEPJ)

HSP 1 Score: 75.5 bits (184), Expect = 1.360e-14
Identity = 31/56 (55.36%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168
            FGGINYQIEHHLFPSMC++H  +++P+V+ TC EF +PY +H ++ SAY  +L+ +
Sbjct:  376 FGGINYQIEHHLFPSMCNVHLNQISPIVQETCKEFNVPYVSHISVISAYKDFLKGI 431          
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Match: A0A7C7CKI7_9FLAO (Acyl-CoA desaturase n=2 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7CKI7_9FLAO)

HSP 1 Score: 73.2 bits (178), Expect = 1.810e-14
Identity = 29/55 (52.73%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    4 GGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYASYLRSL 168
            GG+NYQ+EHHLFP +CH+HY+++AP+V  T  EF +PY    T WSA  S+ R +
Sbjct:  134 GGLNYQVEHHLFPKVCHIHYSKLAPIVMQTAREFNVPYYDQPTFWSALKSHFRMM 188          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150961 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNM2_9STRA1.160e-34100.00FA_desaturase domain-containing protein (Fragment)... [more]
D7G102_ECTSI5.580e-2374.55Fatty acid desaturase, partial n=1 Tax=Ectocarpus ... [more]
A0A6H5KKY7_9PHAE1.420e-1972.73Cytochrome b5 heme-binding domain-containing prote... [more]
A0A7Y5LVD3_9BACT3.230e-1661.82Acyl-CoA desaturase n=1 Tax=Candidatus Brocadiae b... [more]
A0A388LMM3_CHABU4.170e-1561.70Cytochrome b5 heme-binding domain-containing prote... [more]
A0A5E8CJX7_9ZZZZ5.200e-1557.14Fatty acid desaturase n=1 Tax=seawater metagenome ... [more]
A0A6C0KIQ1_9ZZZZ6.670e-1560.71Cytochrome b5 heme-binding domain-containing prote... [more]
L0D6F2_SINAD1.130e-1456.36Fatty acid desaturase n=3 Tax=Singulisphaera TaxID... [more]
A0A0V0QTF1_PSEPJ1.360e-1455.36Cytochrome b5-like heme/steroid binding domain n=1... [more]
A0A7C7CKI7_9FLAO1.810e-1452.73Acyl-CoA desaturase n=2 Tax=Flavobacteriales bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_73contigContig_73:598970..599137 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150961|gw1.73.89.1
BRITEko00000,ko01000,ko01004
KEGG koko:K12418
EC1.14.19.31
DescriptionFatty acid desaturase
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG3239@1|root,2SE5J@2759|Eukaryota
Evalue9.15e-24
Seed ortholog2880.D7G102
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionFatty acid desaturase, partial
Ec32 orthologEc-22_001490.1
TranscriptId151283
TrackFilteredModels1
ProteinId150961
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150961gene_12887Tribonema minus UTEX_B_3156 geneContig_73 598970..599137 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12887_1exon_12887_1Tribonema minus UTEX_B_3156 exonContig_73 598970..599137 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12887CDS_12887Tribonema minus UTEX_B_3156 CDSContig_73 598970..599137 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150961Trimin1|150961|gw1.73.89.1Tribonema minus UTEX_B_3156 polypeptideContig_73 598970..599137 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12887 ID=mRNA_12887|Name=jgi.p|Trimin1|150961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_73:598970..599137+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTCGGCGGCATCAACTACCAGATCGAGCACCACCTCTTCCCGAGCATGTG
CCACATGCACTACGCGCGCGTCGCGCCCGTCGTCCGCGCGACGTGCGCCG
AGTTCGCCATCCCCTACAGCGCGCACGACACGCTGTGGAGCGCGTACGCG
AGCTACCTGCGCTCGCTG
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protein sequence of jgi.p|Trimin1|150961

>Trimin1|150961|gw1.73.89.1 ID=Trimin1|150961|gw1.73.89.1|Name=jgi.p|Trimin1|150961|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=56bp
FGGINYQIEHHLFPSMCHMHYARVAPVVRATCAEFAIPYSAHDTLWSAYA
SYLRSL
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mRNA from alignment at Contig_73:598970..599137+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12887 ID=mRNA_12887|Name=jgi.p|Trimin1|150961|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=168bp|location=Sequence derived from alignment at Contig_73:598970..599137+ (Tribonema minus UTEX_B_3156 )
TTCGGCGGCATCAACTACCAGATCGAGCACCACCTCTTCCCGAGCATGTG CCACATGCACTACGCGCGCGTCGCGCCCGTCGTCCGCGCGACGTGCGCCG AGTTCGCCATCCCCTACAGCGCGCACGACACGCTGTGGAGCGCGTACGCG AGCTACCTGCGCTCGCTG
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Coding sequence (CDS) from alignment at Contig_73:598970..599137+

>mRNA_12887 ID=mRNA_12887|Name=jgi.p|Trimin1|150961|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=168bp|location=Sequence derived from alignment at Contig_73:598970..599137+ (Tribonema minus UTEX_B_3156 )
TTCGGCGGCATCAACTACCAGATCGAGCACCACCTCTTCCCGAGCATGTG
CCACATGCACTACGCGCGCGTCGCGCCCGTCGTCCGCGCGACGTGCGCCG
AGTTCGCCATCCCCTACAGCGCGCACGACACGCTGTGGAGCGCGTACGCG
AGCTACCTGCGCTCGCTG
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