mRNA_12848 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170465
Unique NamemRNA_12848
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: A0A835YKS9_9STRA (Prostaglandin E synthase 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKS9_9STRA)

HSP 1 Score: 555 bits (1429), Expect = 1.320e-199
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 1
Query:    1 MVVSALAAHTSWKAHTAQRSYCSTATRAAAAITGKPGAVFADADIMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYGPI 834
            MVVSALAAHTSWKAHTAQRSYCSTATRAAAAITGKPGAVFADADIMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYGPI
Sbjct:    1 MVVSALAAHTSWKAHTAQRSYCSTATRAAAAITGKPGAVFADADIMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYGPI 278          
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: D8LIK1_ECTSI (Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIK1_ECTSI)

HSP 1 Score: 308 bits (790), Expect = 1.860e-102
Identity = 151/237 (63.71%), Postives = 176/237 (74.26%), Query Frame = 1
Query:  130 DIMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTT---EIQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYGP 831
            DI VYQYKICPFCNKLK VMDFLGIPY VTEVNPLTKKEIKFS+DY+KVPIVR+  +   DSP II  L+  L+    +S ++   F S DA  WAEWADKQLAVLLFPN+TR+F ESYQAFSYV  V TFS +DK +NQ +GS AMW AQGKIKKKYNI+DEREAL+ A++ WT    E+ G  F GG  PNLGDLCVFGC+RAIEGLD H + +  +  +  WY  M+  L Y P
Sbjct:   34 DITVYQYKICPFCNKLKVVMDFLGIPYSVTEVNPLTKKEIKFSEDYRKVPIVRMGGELFKDSPVIIDELIARLRETKVMSDEEHAVFCSSDAKKWAEWADKQLAVLLFPNLTRNFSESYQAFSYVNDVDTFSMMDKISNQVIGSAAMWAAQGKIKKKYNIDDEREALFSAIKDWTDALREVDGP-FFGGDRPNLGDLCVFGCIRAIEGLDTHKDVLARQ-GVGAWYQSMVSTLDYAP 268          
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: W7TEG9_9STRA (Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TEG9_9STRA)

HSP 1 Score: 281 bits (719), Expect = 6.410e-90
Identity = 137/225 (60.89%), Postives = 166/225 (73.78%), Query Frame = 1
Query:  133 IMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARM 807
            I +YQYKICPFC K+KAV+DF  +PY+  +VNPLTK EIKFS DY+KVPI RL ++ + DSP I++ + D L A        LD F SPDAM WAEWADK+LAVLLFPNITRSFGES+QAFSYV  V  FS LDK +NQ +G+ AMW AQGKIKKKYNI DER AL+ AL++WT E+  K F GG  PN+GDL V+ C+ AIEGLDA  + M     ++EWY R+
Sbjct:  162 ITLYQYKICPFCCKVKAVLDFYKVPYETLDVNPLTKAEIKFSSDYRKVPIARLGQEVVRDSPVIVKRIADMLYAARVAPTRDLDVFFSPDAMRWAEWADKELAVLLFPNITRSFGESFQAFSYVNEVPHFSFLDKLSNQWVGATAMWAAQGKIKKKYNIADERTALFDALQRWTREVGEKPFLGGTQPNVGDLGVYACIHAIEGLDAFKDLMANTD-ISEWYTRV 385          
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: R1DDQ7_EMIHU (Prostaglandin E synthase 2 n=4 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DDQ7_EMIHU)

HSP 1 Score: 265 bits (676), Expect = 7.610e-85
Identity = 128/232 (55.17%), Postives = 164/232 (70.69%), Query Frame = 1
Query:  133 IMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRL------DEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTE-IQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARM 807
            I +YQY+ICPFCNK+KA++D  G+ Y+  +VNPLTKKEIK   +Y+KVPI  L      + + ++DSP I + LLD + A          AF SP AM WA+W+D +LAVLLFPNITRSFGE+YQAF YVQ V  FS  D+ +NQ +G+FAMWMAQGKIKKKY I+DER+AL GA+R W  E + G+ F+GG  P+ GD+CV+GCLRAI+   AH E + +   LA WY RM
Sbjct:   46 IRLYQYQICPFCNKIKALLDLHGLEYETVDVNPLTKKEIKPWSEYRKVPIAVLTPLAGGEPEQINDSPVIAERLLDAIDAAALRPARAAKAFRSPQAMEWAQWSDAKLAVLLFPNITRSFGEAYQAFGYVQDVPHFSTADRLSNQVVGAFAMWMAQGKIKKKYAIDDERQALRGAIRTWVGEGLAGRAFAGGDAPHYGDVCVYGCLRAIDRTAAHAEILDDAPELARWYGRM 277          
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: A0A0M0JG54_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JG54_9EUKA)

HSP 1 Score: 263 bits (673), Expect = 1.620e-84
Identity = 129/234 (55.13%), Postives = 166/234 (70.94%), Query Frame = 1
Query:  133 IMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIK-FSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKK-FSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYG 828
            +++YQY+ICPFCNK+KA++D   +PY+ TEVNPLTK EIK +S  Y+KVPI +L ++ ++DS  I QALLD +   G +   QL  F SP A+ WA+W+D++ AVLLFPNITRSF ESYQAF YV  V  FS LDK +NQ +GSF MWMAQGKIKKKY I+DER A+   +  W  E  G K F+GG  PN  D+CVFGCL+AI+  DA+ E M E  A+  WY R+  ++Q G
Sbjct:   45 VLIYQYEICPFCNKVKALLDLYRVPYETTEVNPLTKGEIKAWSGGYRKVPIAKLGDEQVNDSGVISQALLDRMGTAGVLDAKQLAEFRSPKALEWAKWSDEKFAVLLFPNITRSFSESYQAFGYVMSVPHFSMLDKVSNQIIGSFFMWMAQGKIKKKYGIDDERAAVVAGINHWLNEGVGSKPFAGGKQPNFADVCVFGCLKAIDRTDAYKEIMAET-AIKPWYDRVEALVQPG 277          
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: A0A7S2C557_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2C557_9EUKA)

HSP 1 Score: 258 bits (659), Expect = 4.720e-82
Identity = 129/234 (55.13%), Postives = 166/234 (70.94%), Query Frame = 1
Query:  133 IMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIK-FSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKK-FSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYG 828
            + VYQY+ICPFC K+KA++D   +PY  TEVNPLTK EIK +S  Y+KVPI  +  + ++DSP I   +LD L A G + K  LD F SP A+ WA+W+D++LAVL FPNITR+FGE+Y+AF YV GV  FS LDKAANQA+GSF MWMAQGKIKKKY I+DEREA    + +W +E  G   F+GG  PNL D+ VFG L+AI+   AH++ M    ++A WY RML  ++ G
Sbjct:   70 VQVYQYEICPFCCKVKALLDIHRVPYATTEVNPLTKSEIKAWSGGYKKVPIALIAGEQVNDSPVICTQILDRLAASGQIDKKLLDEFRSPSALEWAKWSDEKLAVLAFPNITRTFGEAYEAFGYVWGVPHFSQLDKAANQAIGSFFMWMAQGKIKKKYGIDDEREAFVSGVNKWMSEAVGTTPFAGGERPNLADVAVFGLLKAIDRTAAHSDIMAAT-SVAPWYERMLEAVEPG 302          
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: A0A7S0MFA7_9CRYP (Prostaglandin E synthase 2 n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MFA7_9CRYP)

HSP 1 Score: 252 bits (644), Expect = 7.950e-80
Identity = 126/241 (52.28%), Postives = 159/241 (65.98%), Query Frame = 1
Query:  139 VYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKD---------YQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKDQLDA-FASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYGP 831
            +YQY+ICPFCNK+KAV+DF  +PYK  EVNPLTK E+ F+KD         Y+KVP+VR+    + DSP ++  L++GL   G +   Q+   +  P    W  WADK+LAVLLFPN+TR+  ESYQAF YV  V  FS LDK +N+  GS AMW+AQGKIKKKY I DER AL  +L +WT  I    F GGA PNL DLCVFG LR+IEGL+ H   ++E + +  WY RM G  + GP
Sbjct:   60 MYQYEICPFCNKIKAVLDFHKVPYKTIEVNPLTKSELSFTKDLPEDHPAHKYRKVPLVRIGGDVVADSPVVLDRLVEGLGKEGVIGAAQMARDYKDPKVAEWVRWADKELAVLLFPNLTRTLSESYQAFGYVDSVPHFSFLDKVSNRMAGSLAMWLAQGKIKKKYGITDERAALRASLDRWTDAIGKSDFLGGASPNLADLCVFGTLRSIEGLETHAIVLRETQ-VGPWYERMAG--RVGP 297          
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: A0A7S1XY88_9STRA (Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY88_9STRA)

HSP 1 Score: 241 bits (615), Expect = 1.990e-76
Identity = 120/229 (52.40%), Postives = 162/229 (70.74%), Query Frame = 1
Query:  112 AVFADADIMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLDEQYLHDSPAIIQALLDGLKARGAVSKD-QLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEW 795
            A  ++ DI++YQYKICPFCNK+KA++D+ G+ Y V EVNPLTK + K   DY+KVP+  +  + + DSP I++ L    KA+ A + D     F S  A  W E+ADK+LAVLLFPNITR++ ESYQAFSYV  V TFS++DK +N A+GS AMW+AQGK+KKKY IEDER+AL+ A+ ++   +    F GGA PN+GD+ VFG +RAIEG+DA  + +Q E  +  W
Sbjct:   12 AKLSELDIVIYQYKICPFCNKIKALLDYYGVDYHVIEVNPLTKAQTKAVTDYKKVPVANIGGEIVTDSPQIVRVL----KAKMAEADDVDFAGFFSEAAEEWTEFADKKLAVLLFPNITRNWNESYQAFSYVNDVPTFSSMDKMSNLAIGSTAMWLAQGKLKKKYGIEDERDALFSAVTKFEEALGDNAFLGGANPNMGDIAVFGVIRAIEGMDAFND-LQSETKIGPW 235          
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: A0A7S0IJQ6_9EUKA (Prostaglandin E synthase 2 n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IJQ6_9EUKA)

HSP 1 Score: 241 bits (614), Expect = 1.860e-75
Identity = 124/246 (50.41%), Postives = 164/246 (66.67%), Query Frame = 1
Query:  112 AVFADADIMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLD------EQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGK-KFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARMLGVLQYG 828
            AV A   + ++QY ICPFCNK+KA++D   IPY+  +VNPLTKKEIKFSK+Y+KVPI  L          ++DSP I   LL+ ++   AV  D+L  F S  ++ WAEW+DK+LAVLLFP +TR+F ES+QAF YV  V  FS +DK +NQ +G+FAMWMAQGKIKKKY I+DE  A+  A+  W  E  G+  F+GG  P+LGD+ V+GCL+AI+     +E M E   +  WY RM   +Q G
Sbjct:   43 AVSAVGTVRLFQYDICPFCNKIKAMLDLHKIPYETVDVNPLTKKEIKFSKEYRKVPIAMLGGLEGSGAVQVNDSPLIADTLLERMELSKAVRSDELAHFRSATSLEWAEWSDKKLAVLLFPRMTRTFAESFQAFGYVMQVPHFSMVDKLSNQVVGAFAMWMAQGKIKKKYAIDDEAAAVREAIAHWLKEGVGEASFAGGQKPHLGDVAVYGCLKAIDRTSTFSEIMAET-GVKPWYERMTAEVQPG 287          
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Match: A0A8J5XKP9_DIALT (Prostaglandin E synthase 2 n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XKP9_DIALT)

HSP 1 Score: 237 bits (604), Expect = 7.700e-74
Identity = 117/227 (51.54%), Postives = 156/227 (68.72%), Query Frame = 1
Query:  133 IMVYQYKICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRL--DEQYLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLLFPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKKYNIEDEREALYGALRQWTTEIQGKKFSGGAVPNLGDLCVFGCLRAIEGLDAHTEAMQEEKALAEWYARM 807
            + +YQY+ICPFCNK+KAV+D+  +PY   +VNPLTK E+KFS DY+KVP++     +  L+DS  I+  +L  LK  GA+ +    AF SP+A  W+ W DKQLAV ++PNITRSF ES QAF+YV+ V  FSALDK AN+ +G+ AM  AQGKIKKKYNI DER  ++  LR+W+ E+  ++F GG  P+L DL V+GCLR I+    H + M E   L  WY R+
Sbjct:   66 LTLYQYEICPFCNKVKAVLDYFDVPYATVDVNPLTKAELKFSADYKKVPVLTAASPDLQLNDSADILAHVLTQLKEAGALPERA--AFDSPEAQRWSAWVDKQLAVYIYPNITRSFHESQQAFAYVEDVPHFSALDKLANRYVGALAMVFAQGKIKKKYNIVDERAEMFAKLREWSVEVGDRRFHGGDQPDLADLSVYGCLRGIKATSTHAQIMAETD-LQPWYQRV 289          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170465 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKS9_9STRA1.320e-199100.00Prostaglandin E synthase 2 n=1 Tax=Tribonema minus... [more]
D8LIK1_ECTSI1.860e-10263.71Prostaglandin E synthase 2 n=2 Tax=Ectocarpus TaxI... [more]
W7TEG9_9STRA6.410e-9060.89Prostaglandin E synthase 2 n=2 Tax=Monodopsidaceae... [more]
R1DDQ7_EMIHU7.610e-8555.17Prostaglandin E synthase 2 n=4 Tax=Emiliania huxle... [more]
A0A0M0JG54_9EUKA1.620e-8455.13Prostaglandin E synthase 2 n=1 Tax=Chrysochromulin... [more]
A0A7S2C557_9EUKA4.720e-8255.13Prostaglandin E synthase 2 n=1 Tax=Haptolina brevi... [more]
A0A7S0MFA7_9CRYP7.950e-8052.28Prostaglandin E synthase 2 n=1 Tax=Cryptomonas cur... [more]
A0A7S1XY88_9STRA1.990e-7652.40Prostaglandin E synthase 2 (Fragment) n=1 Tax=Phae... [more]
A0A7S0IJQ6_9EUKA1.860e-7550.41Prostaglandin E synthase 2 n=1 Tax=Calcidiscus lep... [more]
A0A8J5XKP9_DIALT7.700e-7451.54Prostaglandin E synthase 2 n=1 Tax=Diacronema luth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_73contigContig_73:119948..122635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170465|e_gw1.73.40.1
BRITEko00000,ko00001,ko01000
KEGG rclassRC00672
KEGG ReactionR02265
KEGG Pathwayko00590,ko01100,map00590,map01100
KEGG koko:K05309
EC5.3.99.3
Descriptionprostaglandin-E synthase activity
COG categoryO
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3029@1|root,KOG3029@2759|Eukaryota
Evalue3.05e-103
Seed ortholog2880.D8LIK1
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionGlutathione S-transferase, C-terminal-like
Ec32 orthologEc-18_003320.1
TranscriptId170787
TrackFilteredModels1
ProteinId170465
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170465gene_12848Tribonema minus UTEX_B_3156 geneContig_73 119948..122635 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170465Trimin1|170465|e_gw1.73.40.1Tribonema minus UTEX_B_3156 polypeptideContig_73 119948..122635 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12848_1exon_12848_1Tribonema minus UTEX_B_3156 exonContig_73 119948..120220 +
exon_12848_2exon_12848_2Tribonema minus UTEX_B_3156 exonContig_73 120638..120779 +
exon_12848_3exon_12848_3Tribonema minus UTEX_B_3156 exonContig_73 121390..121562 +
exon_12848_4exon_12848_4Tribonema minus UTEX_B_3156 exonContig_73 121887..121964 +
exon_12848_5exon_12848_5Tribonema minus UTEX_B_3156 exonContig_73 122465..122635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12848CDS_12848Tribonema minus UTEX_B_3156 CDSContig_73 119948..120220 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12848 ID=mRNA_12848|Name=jgi.p|Trimin1|170465|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=837bp|location=Sequence derived from alignment at Contig_73:119948..122635+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCGTATCGGCGCTTGCAGCGCACACGTCCTGGAAGGCGCACACCGC
TCAGCGCAGCTATTGCTCAACCGCCACGCGGGCAGCAGCTGCGATCACGG
GAAAGCCAGGCGCGGTCTTTGCGGATGCTGACATCATGGTGTACCAGTAC
AAGATCTGTCCATTCTGCAACAAGCTCAAGGCCGTGATGGACTTTCTGGG
GATTCCCTACAAGGTCACGGAGGTCAATCCGCTGACGAAGAAGGAGATCA
AGTTCTCGAAGGACTACCAAAAAGTACCCATCGTGCGCCTGGATGAGCAA
TACCTACACGACTCGCCAGCCATCATTCAGGCGCTGTTGGATGGGCTCAA
GGCCAGAGGCGCTGTGTCCAAGGACCAGCTGGATGCCTTTGCGTCACCAG
ACGCGATGAACTGGGCCGAGTGGGCGGACAAGCAGCTGGCGGTGCTGCTG
TTCCCCAACATCACACGCAGCTTCGGCGAGTCCTACCAGGCGTTCTCGTA
CGTGCAAGGCGTGAGCACGTTCAGCGCGCTGGACAAGGCCGCCAACCAGG
CGTTGGGCTCCTTTGCCATGTGGATGGCGCAGGGGAAGATCAAGAAAAAG
TACAACATTGAGGACGAGCGCGAGGCGCTGTACGGAGCACTGAGGCAGTG
GACAACAGAAATACAGGGCAAGAAGTTTTCCGGCGGAGCGGTCCCCAACC
TGGGCGACCTGTGCGTGTTTGGCTGCCTGCGCGCCATCGAAGGGCTGGAC
GCGCACACAGAGGCCATGCAGGAGGAGAAGGCGCTGGCGGAGTGGTATGC
GCGCATGCTGGGGGTCTTGCAGTACGGACCGATATAG
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protein sequence of jgi.p|Trimin1|170465

>Trimin1|170465|e_gw1.73.40.1 ID=Trimin1|170465|e_gw1.73.40.1|Name=jgi.p|Trimin1|170465|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=279bp
MVVSALAAHTSWKAHTAQRSYCSTATRAAAAITGKPGAVFADADIMVYQY
KICPFCNKLKAVMDFLGIPYKVTEVNPLTKKEIKFSKDYQKVPIVRLDEQ
YLHDSPAIIQALLDGLKARGAVSKDQLDAFASPDAMNWAEWADKQLAVLL
FPNITRSFGESYQAFSYVQGVSTFSALDKAANQALGSFAMWMAQGKIKKK
YNIEDEREALYGALRQWTTEIQGKKFSGGAVPNLGDLCVFGCLRAIEGLD
AHTEAMQEEKALAEWYARMLGVLQYGPI*
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mRNA from alignment at Contig_73:119948..122635+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12848 ID=mRNA_12848|Name=jgi.p|Trimin1|170465|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2688bp|location=Sequence derived from alignment at Contig_73:119948..122635+ (Tribonema minus UTEX_B_3156 )
ATGGTCGTATCGGCGCTTGCAGCGCACACGTCCTGGAAGGCGCACACCGC TCAGCGCAGCTATTGCTCAACCGCCACGCGGGCAGCAGCTGCGATCACGG GAAAGCCAGGCGCGGTCTTTGCGGATGCTGACATCATGGTGTACCAGTAC AAGATCTGTCCATTCTGCAACAAGCTCAAGGCCGTGATGGACTTTCTGGG GATTCCCTACAAGGTCACGGAGGTCAATCCGCTGACGAAGAAGGAGATCA AGTTCTCGAAGGACTACCAAAAAGTGAGTGTCCTCTTTGGGGGACTTGCG GCGCATGGGGCAGAAGTGAATCTGAAGCAACTGGAGCTATTCGGGCACCA AGTCTTATTGCAAGCGCGGCATTCACGCAAAGCAGCCATGTAAACAGCAG TTACTTCAAGTCTGTGCGCTTCTGACAATGTCAGCTTCTTGTTTTGTGCT GCGGGTAGTATCTTTACGACTCGGCGGTTGTTGACCCGCTTCCATGCGCG GCATCCACTGTTGAGTGCCGCTCAATTCAGAACCCCTTGGCGGACGTGAC ACTACACCGACTTCTATCAAACTACCCTTCAATGCTGTGCAGCGGCAGCA TTTGCCCCTGGCACGAGCGCGCGTCTCACCGCTGTTGAAACGCGGAGATC ATGACGCAGCTGCTCCTTGAACTGCTGGTCATCACCACAGGTACCCATCG TGCGCCTGGATGAGCAATACCTACACGACTCGCCAGCCATCATTCAGGCG CTGTTGGATGGGCTCAAGGCCAGAGGCGCTGTGTCCAAGGACCAGCTGGA TGCCTTTGCGTCACCAGACGCGATGAACTGGGGTACGCTCATTGATGTCC CGCACGCGCATGCAAACTCAGGGTGTGCTTTTTGTGGATGGATTTCCTAG CTGCGTGTGCCATCAGCTGGCCATGTTGGCATTGCCAAATGCATGGCATT GGGGAATAGCGTATGACCTTTACTGGAAACTGGACAAAACTTTGATGTGC TGCGGTCGCTTGGGCATTGTTGAGCATTGTGACTGGGAGGCTGAGCTCTT TTGGTCGTCCAGCTTACGTAAACGTGTCAGGTTCAGCCGCTGCCTACCAG CCCCCTTGCTGCGCGGATCGAAGGCCTTGTTTTCAGGCTTGTTCCTGCAG CTGCCGCATTGAAATGTGTGCTGTCATGAAGTTGCGTCATGTGTGTTGAT CAACCCGCTGGCGTCGATGCAGCGGAGTGGGTGAACAAGCAGCTGGCGCT GCTACTACTATTCACAACATCATGCACAGCTTTTACACAACCTACTTATG CTCCCTTGGGAGCGTATCGGCTTCAACTGATGCTTGCCAGAGCCCCCTTG ATGCATGCCGACCATCCTCTTCTAAGTACCCTTTGTTGTTACGTGTTGTT CAGTAACATTTTTTATTTGAAAATTCCCTCATGTCAATGCAGCCGAGTGG GCGGACAAGCAGCTGGCGGTGCTGCTGTTCCCCAACATCACACGCAGCTT CGGCGAGTCCTACCAGGCGTTCTCGTACGTGCAAGGCGTGAGCACGTTCA GCGCGCTGGACAAGGCCGCCAACCAGGCGTTGGGCTCCTTTGCCATGTGG ATGGCGCAGGGGAAGGTCAGTGCTCAGCTGGGACTACATGAAGTTTGCGG TGAAGTTTGGCATGTAGCACATGAGCACACTGAGCTTCGACTGCAGATTT CGTTTGCTGGCTGCTGTGAGGACTGCGGTTGAAACTTGCTGAGCAATGCT GTGATGATTGGATGGCTGCGCTCTTTTGGGATGGCTTAAGCACACGAGCA CCCCCTGAACTTCAACTGCAGTCCATCGAGGTGCTCCTCACTTGAAGTGG TGTACCGGCTTACTGAATATAGGTAGACACACTTGACAGCTTGACATGCA CCATCTCATTGTTCATTCTGTACCCCCCTGGTTTCACAGATCAAGAAAAA GTACAACATTGAGGACGAGCGCGAGGCGCTGTACGGAGCACTGAGGCAGT GGACAACAGAAATACAGGTGATATTTTGTGTGATGGCGCTCATGATGTGT GCGGTGTGAGCGCTCAATGACGCGCCTGGAGATGTGTCGACAGCGCTGTA CGATACTGCGCTAGTGATGCACCAACGCTGCCTTAATTGAGTGCAGGGTC GGAGAGGGGACATGCCTCTATATCATTCGCGATCGCCCTGTACCAGCAGC TGATGAGGGCAGCCTGAAACTGCCAGATTTCACAAATTCATGAGTCTCCT GCGTGGATGCATCATCCCCCCCCCCCCCCCTCCCCTCCCTGCTGCTGGCA TGTCCTGCATGTAATCAGAGTTGCTCTTGGTGCACTCAGTTTTGCCATCA ACGACTCTCACCGTGACCTCCGCAAATCTCGCCAAGCGAACCCCTCATCA CATTTGACCGTCTCTAGTGTGTACTGCTTCACGCGGTGAACACAGTTGCA AAGGCTCAACTGCCATGAGAATCAACCCCCAATCTCACGGCCTGTCAACT GCAACCTGCCCCTCCAGGGCAAGAAGTTTTCCGGCGGAGCGGTCCCCAAC CTGGGCGACCTGTGCGTGTTTGGCTGCCTGCGCGCCATCGAAGGGCTGGA CGCGCACACAGAGGCCATGCAGGAGGAGAAGGCGCTGGCGGAGTGGTATG CGCGCATGCTGGGGGTCTTGCAGTACGGACCGATATAG
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Coding sequence (CDS) from alignment at Contig_73:119948..122635+

>mRNA_12848 ID=mRNA_12848|Name=jgi.p|Trimin1|170465|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=837bp|location=Sequence derived from alignment at Contig_73:119948..122635+ (Tribonema minus UTEX_B_3156 )
ATGGTCGTATCGGCGCTTGCAGCGCACACGTCCTGGAAGGCGCACACCGC
TCAGCGCAGCTATTGCTCAACCGCCACGCGGGCAGCAGCTGCGATCACGG
GAAAGCCAGGCGCGGTCTTTGCGGATGCTGACATCATGGTGTACCAGTAC
AAGATCTGTCCATTCTGCAACAAGCTCAAGGCCGTGATGGACTTTCTGGG
GATTCCCTACAAGGTCACGGAGGTCAATCCGCTGACGAAGAAGGAGATCA
AGTTCTCGAAGGACTACCAAAAAGTACCCATCGTGCGCCTGGATGAGCAA
TACCTACACGACTCGCCAGCCATCATTCAGGCGCTGTTGGATGGGCTCAA
GGCCAGAGGCGCTGTGTCCAAGGACCAGCTGGATGCCTTTGCGTCACCAG
ACGCGATGAACTGGGCCGAGTGGGCGGACAAGCAGCTGGCGGTGCTGCTG
TTCCCCAACATCACACGCAGCTTCGGCGAGTCCTACCAGGCGTTCTCGTA
CGTGCAAGGCGTGAGCACGTTCAGCGCGCTGGACAAGGCCGCCAACCAGG
CGTTGGGCTCCTTTGCCATGTGGATGGCGCAGGGGAAGATCAAGAAAAAG
TACAACATTGAGGACGAGCGCGAGGCGCTGTACGGAGCACTGAGGCAGTG
GACAACAGAAATACAGGGCAAGAAGTTTTCCGGCGGAGCGGTCCCCAACC
TGGGCGACCTGTGCGTGTTTGGCTGCCTGCGCGCCATCGAAGGGCTGGAC
GCGCACACAGAGGCCATGCAGGAGGAGAAGGCGCTGGCGGAGTGGTATGC
GCGCATGCTGGGGGTCTTGCAGTACGGACCGATATAG
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