mRNA_12820 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|96461
Unique NamemRNA_12820
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: A0A835YRE1_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRE1_9STRA)

HSP 1 Score: 536 bits (1382), Expect = 1.760e-190
Identity = 276/276 (100.00%), Postives = 276/276 (100.00%), Query Frame = 3
Query:  108 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPAGA 935
            MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPAGA
Sbjct:    1 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPAGA 276          
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: K3WAY4_GLOUD (60S acidic ribosomal protein P0 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAY4_GLOUD)

HSP 1 Score: 380 bits (977), Expect = 1.610e-128
Identity = 186/274 (67.88%), Postives = 230/274 (83.94%), Query Frame = 3
Query:  108 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPA 929
            M LS ERK+ YF +LE LL +Y+KI LV  DNVGS Q+ QIR++LRG+A +L+GKNT+IRK+ +NYIK+NPGHP E +IP ++GNVGF+FTN DL ++REV+E N+VPAPARVGAVAP+DV +PPGPTGCDPGQT+FFQ LQ+ TKI KGQIEI NEV L KKG+KVGNSEAVLL +L+IRPFTYGLVI+ VYDNGSIF+ AVLDLT+DDL A+FV  +RNVAA SL +G+PTLAS+PHS+ANAFK LVAV V+    +FA+A+P+K  L  P+
Sbjct:    1 MGLSQERKQEYFSKLENLLDNYTKIFLVGVDNVGSNQIQQIRISLRGRAEILMGKNTLIRKVFSNYIKKNPGHPLEQVIPLLKGNVGFVFTNQDLNQIREVLESNKVPAPARVGAVAPIDVIIPPGPTGCDPGQTAFFQALQVGTKIQKGQIEIINEVLLTKKGEKVGNSEAVLLQKLNIRPFTYGLVIQTVYDNGSIFDPAVLDLTEDDLTAKFVAGLRNVAAVSLEIGFPTLASIPHSVANAFKTLVAVVVELDSFSFAKADPYKAYLADPS 274          
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: A0A8K1CBN6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBN6_PYTOL)

HSP 1 Score: 376 bits (966), Expect = 8.300e-127
Identity = 187/274 (68.25%), Postives = 228/274 (83.21%), Query Frame = 3
Query:  108 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPA 929
            M LS ERK+ YF +LE LL +Y+KI LV  DNVGS QM QIRLALR +A VL+GKNT++RK+ TN+IK+NPGHP EN+IP ++GNVGF+FTN DL ++R++IE ++VPAPARVGAVAPVDV VPPGPTGCDPGQTSFFQ L I TKI +GQIEI +EV L KKGDKVGNSEAVLL +L I+PF YGLVIE+VYDNGS+F  AVLDLT+DDL A+FV  +RNVAA SL +G+PTLAS+PHS+ANAFK LVA+AV+    +FA+A+P+K  L  P+
Sbjct:    1 MGLSQERKQDYFTKLESLLENYTKIFLVNVDNVGSSQMQQIRLALRSKAEVLMGKNTLMRKVFTNFIKKNPGHPLENMIPLLKGNVGFVFTNNDLSQIRDLIESHKVPAPARVGAVAPVDVVVPPGPTGCDPGQTSFFQTLNIGTKIQRGQIEIVSEVLLTKKGDKVGNSEAVLLQKLGIKPFAYGLVIEVVYDNGSLFNPAVLDLTEDDLCAKFVAGLRNVAAVSLEIGFPTLASIPHSVANAFKTLVAIAVETENFSFAKADPYKAYLADPS 274          
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: A0A485KPX2_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPX2_9STRA)

HSP 1 Score: 373 bits (958), Expect = 1.270e-125
Identity = 183/274 (66.79%), Postives = 229/274 (83.58%), Query Frame = 3
Query:  108 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPA 929
            M +S ERK  YF +LE LL +Y++I +V  DNVGS Q+ QIR+ALRG A VL+GKNTMIRK+  N++K+NPGHP E +IP ++GNVGF+FTN DLG+VRE +E N+VPAPARVGAVAP+DV+ P GPTGCDPGQTSFFQ LQI TKI KGQIEI ++V L KKG+KVGNSEA LL +L+IRPF+YGL+I+ VYDNGSIF+ AVLDLT+++L A+FVG +RNVAA SLALG+PTLAS+PHS+ANAFK+LVA+AV+C   +F +A+PFK  L  P+
Sbjct:    1 MGISMERKAEYFLKLENLLENYTRIFIVGVDNVGSNQIQQIRIALRGTAEVLMGKNTMIRKVFANFVKKNPGHPLETMIPLLKGNVGFVFTNADLGQVRETLEANKVPAPARVGAVAPIDVWCPAGPTGCDPGQTSFFQALQIGTKIQKGQIEIVSDVLLTKKGEKVGNSEAALLQKLNIRPFSYGLIIQSVYDNGSIFDPAVLDLTEENLVAKFVGGLRNVAAVSLALGFPTLASIPHSLANAFKSLVAIAVECESFSFEKADPFKAFLADPS 274          
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: A0A1V9YVN6_9STRA (60S acidic ribosomal protein P0 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YVN6_9STRA)

HSP 1 Score: 383 bits (983), Expect = 3.230e-125
Identity = 189/274 (68.98%), Postives = 228/274 (83.21%), Query Frame = 3
Query:  108 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPA 929
            M +S ERK  YF +LE LL +Y+KI LV  DNVGS Q+ QIR+ALRG+  VL+GKNTMIRK+  NYIK+ PGHP E LIP +RGNVGF+FTNGDLG+VR+++++N+VPAPARVGAVAP+DVF P GPTGCDPGQTSFFQ LQI TKI KGQIEI +E  L KKGDKVGNSEA LL +L+IRPF+YG++I  VYDNGS+F+ AVLDLT+DDL A+FVG +RNVAA SLALG+PTLAS+PHSIANAFK LVAVA++C   +F +A+PFK  L  P+
Sbjct:   13 MGISMERKGEYFIKLENLLNTYTKIFLVSVDNVGSNQIQQIRMALRGKGEVLMGKNTMIRKVFNNYIKKTPGHPLEALIPLLRGNVGFVFTNGDLGEVRQILDDNKVPAPARVGAVAPIDVFCPAGPTGCDPGQTSFFQALQISTKIQKGQIEIVSETLLTKKGDKVGNSEAALLQKLNIRPFSYGMIITTVYDNGSMFDPAVLDLTEDDLVAKFVGGLRNVAAVSLALGFPTLASIPHSIANAFKTLVAVAIECESFSFKKADPFKAFLADPS 286          
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: A0A5D6XUU0_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUU0_9STRA)

HSP 1 Score: 372 bits (955), Expect = 3.480e-125
Identity = 185/274 (67.52%), Postives = 225/274 (82.12%), Query Frame = 3
Query:  108 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPA 929
            M LS ERK+ YF +LE +L SY+KI LV  DNVGS Q+ QIRLALR +A +L+GKNT+IRK+  NY+K+NPGHP E  +P ++GNVGF+FTN DL +VREV+E N+VPAPARVGA+AP+DV VP GPTG DPGQT FFQ LQIPTKI KGQIEI NEV L KKGDKVGNSEAVLL +L+IRPFTYGLVI+ VYDNGS+F+ AVLDLT+DDL A+FV  +RN+AA SL +G+PTLAS+PHS+ANAFK LVAV V+    +FA+A+P+K  L  P+
Sbjct:    1 MGLSQERKQDYFVKLEHMLESYTKIFLVGVDNVGSNQIQQIRLALRNRAELLMGKNTLIRKVFNNYVKKNPGHPLEQFLPLLKGNVGFVFTNEDLTQVREVLEANKVPAPARVGALAPIDVIVPAGPTGADPGQTGFFQALQIPTKIVKGQIEIINEVLLTKKGDKVGNSEAVLLQKLNIRPFTYGLVIQSVYDNGSLFDPAVLDLTEDDLTAKFVAGLRNIAAVSLEIGFPTLASIPHSVANAFKTLVAVVVELDSFSFAKADPYKAYLANPS 274          
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: T0Q9U0_SAPDV (60S acidic ribosomal protein P0 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0Q9U0_SAPDV)

HSP 1 Score: 371 bits (953), Expect = 7.010e-125
Identity = 185/274 (67.52%), Postives = 225/274 (82.12%), Query Frame = 3
Query:  108 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPA 929
            M +S ERK  YF +LE LLG Y+KI LV  DNVGS Q+ QIR+ALRG   VL+GKNTMIRK+  N++K+NPGHP E LIP +RGNVGF+FTN DLG+VR+V+++N+VPAPAR+GA+APVDV+ P GPTGCDPGQTSFFQ LQI TKI KGQIEI ++V L KKG+KVGNSEA LL +L+IRPF+YG+ I  VYDNGS+F+ AVLDLT+DDL  +FV  +RNVAA SLALG+PTLAS+PHSIANAFK LVAVAV+C   +F +A+PFK  L  P+
Sbjct:    1 MGISMERKGEYFVKLEGLLGDYTKIFLVTVDNVGSNQIQQIRIALRGTGEVLMGKNTMIRKVFANFLKKNPGHPLEQLIPLLRGNVGFVFTNSDLGEVRKVLDDNKVPAPARIGAIAPVDVWCPAGPTGCDPGQTSFFQALQIGTKIQKGQIEIVSDVLLTKKGEKVGNSEAALLQKLNIRPFSYGMSIVTVYDNGSMFDPAVLDLTEDDLVNKFVAGLRNVAAVSLALGFPTLASIPHSIANAFKTLVAVAVECESFSFKKADPFKAFLADPS 274          
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: A0A024UJC7_9STRA (60S acidic ribosomal protein P0 n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024UJC7_9STRA)

HSP 1 Score: 369 bits (947), Expect = 5.690e-124
Identity = 184/274 (67.15%), Postives = 224/274 (81.75%), Query Frame = 3
Query:  108 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPA 929
            M +S ERK  YF +LE LL +Y+KI LV  DNVGS Q+ QIR+ALRG A VL+GKNTMIRK+  NY+++NPGHP E LIP +RGNVGF+FTNGDLGKVRE +E N+VPAPARV A+AP+DV+ P GPTGCDPGQTSFFQ LQI TKI KGQIEI  +V L K G+KVGNSEAVLL +L+IRPF+YGL+I  VYDNGSIF+  VLDLT+D+L  +FVG +RNVA+ SLALG+PTLAS+PHS+ANAFK+LVA+AV+    +F +A+PFK  L  P+
Sbjct:    1 MGISMERKGEYFVKLENLLDTYNKIFLVSVDNVGSNQIQQIRIALRGTAEVLMGKNTMIRKVFNNYVRKNPGHPLEGLIPALRGNVGFVFTNGDLGKVRETLEANKVPAPARVNAIAPIDVWCPAGPTGCDPGQTSFFQALQIGTKIQKGQIEIVADVLLTKAGEKVGNSEAVLLQKLNIRPFSYGLIIVSVYDNGSIFDPKVLDLTEDNLVQKFVGGLRNVASVSLALGFPTLASIPHSLANAFKSLVAIAVESENFSFKKADPFKAFLADPS 274          
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: A0A4D9D366_9STRA (60S acidic ribosomal protein P0 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D366_9STRA)

HSP 1 Score: 369 bits (946), Expect = 9.260e-124
Identity = 187/268 (69.78%), Postives = 220/268 (82.09%), Query Frame = 3
Query:  126 RKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPA 929
            +KE YF+R+EELLGSY+K+ +V  DNVGS+QM QIR ALRG A VL+GKNT IRK++  ++K+NPGHP E L+  V GNVGF+FTNGDLG VRE +EENRVPAPARVG++AP +V VPPGPTGCDPGQTSFFQ LQI TKI KGQIEIT  V ++K+GDKVGNSEA+LL +L+I PFTYGLVI+ +YDNGS+F+  VLDLTD DL A+F  AVRNVAA SL LGYPTLASLPHSIANAFKA VAVAV     +F +AEPFK  L  P+
Sbjct:    8 KKEDYFERVEELLGSYTKVFVVGVDNVGSKQMQQIRQALRGTATVLMGKNTRIRKVMNIFLKKNPGHPIEQLVNYVGGNVGFVFTNGDLGSVRETLEENRVPAPARVGSLAPCNVIVPPGPTGCDPGQTSFFQALQIATKITKGQIEITTAVQILKEGDKVGNSEAILLQKLNILPFTYGLVIQTIYDNGSLFDPKVLDLTDADLAAKFAVAVRNVAAISLQLGYPTLASLPHSIANAFKACVAVAVGLEEFSFEKAEPFKAYLKDPS 275          
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Match: A0A0P6IAI3_9CRUS (60S acidic ribosomal protein P0 n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P6IAI3_9CRUS)

HSP 1 Score: 367 bits (942), Expect = 3.370e-123
Identity = 181/274 (66.06%), Postives = 224/274 (81.75%), Query Frame = 3
Query:  108 MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAVVLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVREVIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKGQIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFEAAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVAVAVQCPGVTFAQAEPFKKLLPAPA 929
            M LS ERK  YF +LE LL +++KI LV  DNVGS QM QIRL LRG+A +L+GKNT++RK+ +N+IK+NPGHP EN IP ++GNVGF+FTN DL ++REV+E N+VPAPARVGA+APVDV +P GPTGCDPGQTSFFQ L I TKIAKGQIEI  +V +VK+G+KVGNSEA LL +L+IRPF YGLVI  VYDNGS+F+ AVLDLT+DDL A+F   +RNVAA SL +G+PTLAS+PHS+ANAFK LVA+AV+C   +F +A+PFK  L  P+
Sbjct:    1 MGLSQERKLEYFTKLETLLENFTKIFLVNVDNVGSHQMQQIRLELRGRAELLMGKNTLMRKVFSNFIKKNPGHPLENFIPLLKGNVGFVFTNADLNQIREVVEGNKVPAPARVGAIAPVDVIIPAGPTGCDPGQTSFFQTLSIGTKIAKGQIEIVTDVLMVKQGEKVGNSEAALLQKLNIRPFAYGLVISQVYDNGSLFDPAVLDLTEDDLCAKFAAGLRNVAAISLEIGFPTLASIPHSVANAFKTLVAIAVECETFSFKKADPFKAYLADPS 274          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|96461 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YRE1_9STRA1.760e-190100.0060S acidic ribosomal protein P0 n=1 Tax=Tribonema ... [more]
K3WAY4_GLOUD1.610e-12867.8860S acidic ribosomal protein P0 n=1 Tax=Globispora... [more]
A0A8K1CBN6_PYTOL8.300e-12768.25Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A485KPX2_9STRA1.270e-12566.7960S acidic ribosomal protein P0 n=1 Tax=Aphanomyce... [more]
A0A1V9YVN6_9STRA3.230e-12568.9860S acidic ribosomal protein P0 (Fragment) n=1 Tax... [more]
A0A5D6XUU0_9STRA3.480e-12567.5260S acidic ribosomal protein P0 n=1 Tax=Pythium br... [more]
T0Q9U0_SAPDV7.010e-12567.5260S acidic ribosomal protein P0 n=3 Tax=Saprolegni... [more]
A0A024UJC7_9STRA5.690e-12467.1560S acidic ribosomal protein P0 n=2 Tax=Aphanomyce... [more]
A0A4D9D366_9STRA9.260e-12469.7860S acidic ribosomal protein P0 n=1 Tax=Nannochlor... [more]
A0A0P6IAI3_9CRUS3.370e-12366.0660S acidic ribosomal protein P0 n=1 Tax=Daphnia ma... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_89contigContig_89:401523..404473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|96461|CE96460_6202
Description60S acidic ribosomal protein P0
COG categoryJ
Max annot lvl121069|Pythiales
EggNOG OGsCOG0244@1|root,KOG0815@2759|Eukaryota,1MEJ8@121069|Pythiales
Evalue9.49e-131
Seed ortholog65071.PYU1_T002125
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L10/acidic P0
Ec32 orthologEc-06_006850.1
TranscriptId96783
TrackFilteredModels1
ProteinId96461
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|96461gene_12820Tribonema minus UTEX_B_3156 geneContig_89 401523..404473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|96461Trimin1|96461|CE96460_6202Tribonema minus UTEX_B_3156 polypeptideContig_89 401730..404311 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12820_1exon_12820_1Tribonema minus UTEX_B_3156 exonContig_89 401523..401628 +
exon_12820_2exon_12820_2Tribonema minus UTEX_B_3156 exonContig_89 401729..401977 +
exon_12820_3exon_12820_3Tribonema minus UTEX_B_3156 exonContig_89 403091..403313 +
exon_12820_4exon_12820_4Tribonema minus UTEX_B_3156 exonContig_89 403907..404473 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_12820UTR5_12820Tribonema minus UTEX_B_3156 five_prime_UTRContig_89 401523..401628 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12820CDS_12820Tribonema minus UTEX_B_3156 CDSContig_89 401730..401977 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12820UTR3_12820Tribonema minus UTEX_B_3156 three_prime_UTRContig_89 404312..404473 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12820 ID=mRNA_12820|Name=jgi.p|Trimin1|96461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1145bp|location=Sequence derived from alignment at Contig_89:401523..404473+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCTAGCTAGCACACCCCGGCAGCGTGACCTAAACAACACCAACCTGTGT
GGAGTGGTTAAATAGTTTGAGACTAGAGCTCATTCTGCCACTACACACTC
CGCAAACATGCCTCTGTCCGCTGAGCGTAAGGAATGGTACTTCAAGCGCC
TTGAGGAGCTGCTGGGCTCCTACTCCAAGATCCTGCTGGTGCAGTGCGAC
AATGTCGGCTCCCGCCAGATGGCCCAGATCAGGCTGGCGCTGCGCGGCCA
GGCCGTGGTGCTGCTGGGAAAGAACACCATGATCCGCAAGATCCTAACCA
ACTACATCAAGCAGAACCCTGGTCACCCCTACGAGAACCTGATCCCCCGC
GTCAGGGGCAACGTTGGGTTCATCTTCACCAACGGCGACCTCGGCAAGGT
GCGCGAGGTGATTGAGGAGAACAGGGTGCCCGCCCCCGCGCGCGTGGGCG
CCGTGGCCCCCGTGGACGTGTTCGTGCCCCCCGGCCCTACGGGCTGCGAC
CCCGGCCAGACGTCCTTCTTCCAGGTCCTGCAGATCCCCACCAAGATTGC
CAAGGGCCAGATCGAGATCACCAACGAGGTGCACCTCGTGAAGAAGGGCG
ACAAGGTCGGCAACTCGGAGGCGGTCCTCCTCACGCGCCTGTCCATCCGC
CCCTTCACGTACGGTCTCGTCATCGAGCTTGTGTACGACAACGGGTCCAT
CTTCGAGGCGGCAGTGCTCGACCTGACGGACGACGACCTGCGCGCGCGCT
TCGTAGGCGCCGTGCGCAACGTCGCCGCCGCGTCGCTCGCGCTCGGCTAC
CCCACGCTCGCCTCGCTGCCGCACTCCATCGCCAACGCCTTCAAGGCGCT
GGTGGCGGTCGCCGTGCAGTGCCCGGGCGTGACGTTCGCGCAGGCGGAGC
CGTTCAAGAAGCTGCTGCCGGCGCCCGCGGGCGCAGCGGCGGCAGCGGCG
CCCACGGCGGCGGAGGAGGAGGAGGAGGAGTGAGTCACCGCTTGAACTTG
CCCTTCGCTGGCGGAGGGGAGGTTTTGGCGGGGGACCGGGAGCAGCGCTG
CACAGCTGTTGAATGCATGTGTGCTGAGGGGGGAGGGGAGGGGGCGGCGC
CCCAGCGGCTGCCTGAATGAGACACGCGTGATGCGGTTGGAGACG
back to top

protein sequence of jgi.p|Trimin1|96461

>Trimin1|96461|CE96460_6202 ID=Trimin1|96461|CE96460_6202|Name=jgi.p|Trimin1|96461|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp
MPLSAERKEWYFKRLEELLGSYSKILLVQCDNVGSRQMAQIRLALRGQAV
VLLGKNTMIRKILTNYIKQNPGHPYENLIPRVRGNVGFIFTNGDLGKVRE
VIEENRVPAPARVGAVAPVDVFVPPGPTGCDPGQTSFFQVLQIPTKIAKG
QIEITNEVHLVKKGDKVGNSEAVLLTRLSIRPFTYGLVIELVYDNGSIFE
AAVLDLTDDDLRARFVGAVRNVAAASLALGYPTLASLPHSIANAFKALVA
VAVQCPGVTFAQAEPFKKLLPAPAGAAAAAAPTAAEEEEEE*
back to top

mRNA from alignment at Contig_89:401523..404473+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12820 ID=mRNA_12820|Name=jgi.p|Trimin1|96461|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2951bp|location=Sequence derived from alignment at Contig_89:401523..404473+ (Tribonema minus UTEX_B_3156 )
CTCTAGCTAGCACACCCCGGCAGCGTGACCTAAACAACACCAACCTGTGT GGAGTGGTTAAATAGTTTGAGACTAGAGCTCATTCTGCCACTACACACTC CGCAAAGTAAGTGCAACGCCTCCCTCCTGCTCTGTACCTCGACGCCAAGT CAAGATTGCCAACTCTCACCAACACCACCTTTGCTACTGCTACACCGTCA CCGCAGCATGCCTCTGTCCGCTGAGCGTAAGGAATGGTACTTCAAGCGCC TTGAGGAGCTGCTGGGCTCCTACTCCAAGATCCTGCTGGTGCAGTGCGAC AATGTCGGCTCCCGCCAGATGGCCCAGATCAGGCTGGCGCTGCGCGGCCA GGCCGTGGTGCTGCTGGGAAAGAACACCATGATCCGCAAGATCCTAACCA ACTACATCAAGCAGAACCCTGGTCACCCCTACGAGAACCTGATCCCCCGC GTCAGGTGGGTGCAGCCAGCGCTCTGCATCAATGCAGAAGCTACAGCTTG AAGCGAACTCATCCATCATCAATGACTCACATCTTGCGCTATCAATCTTT GTCGCCGACCGCTGGCCATATTGCGTCGGCTGGCGTGCACTGCAAACAGA CCACGCTGCAGCTCCGCCCCAGATGCTTGCTCCGAAAAATCACTGATCGC TACTTCACTTGGCAGCTGCAGCAGCCAGTCATGCAGAAGCCGCAGCAGAA GACGCTGCATATAGCCTGCTCTCATGCGCCGATGATGTTTGCGACCCTTG CTGGTGCTGCTGCAATCGGCACCAATTTGGCGACAAAGCCGTCGCCATCT CGTTGGCGTTGATGTCATGAAGCATGTTTCCCGCATGCTGTGATAGTGCA TGCGTGTCAGATGCGTCAAACAAGCATAGGTGTGAGGAGCTGCCATCTGG AGCGGATCGGAGCGGTGGGGATCAAGTAACTATTTTGGAGCCTCGGAATG CTGCACGGCTTGAGAGGGAACACGGACTACGGGGGGGGGGGGTGAGGTGC AGAGGGGGTGTTGTGATACAGTAGGCAACGTGATTCAGTCACACTGGTTG CGGCGGGAGGCGCACTGTTGCTGGTAGGCGATGGACCAAGGGGTGCAGCT GCAGTGCAGTGCAGCTGGATGCGCACTTGACTTGAAGTATGACTTGAAGT ATGGTGCGTGCTGTGTGTGCGGTAATGAGCAAGAAAACGCCGTGATCGCA TCGACAGGGCTTGCCTGAAAGTCACGTGCAGTTCAGGTGGCCTGGCTACG TCTGCGAGAGGCTGCTGAGGGACCGCCCAGCACTTCAAGTACTTGAAGTA CGGTGGACTGCACCCGGTGCGTGACCTGTGAACCTTCACACCTCGCTGCT TCTACTTCAACTGCAGGGGCAATGTCGGTTTCATCTTCACCAACGGCGAC AATGGCAAGGCGCGACAGTGATCAAGACGAACAGGGCGCCGCCCCCGCGC GCGACGGCGCCCGCAACATCACGTTCGCTCCCACCACTTCAACACCTCTA ACAGTCCGCTGCGGTGAACCCTTGGCCCGTCTCTGACCTCTTCTCACATG CGTCAACTTCAACTGCAGGGGCAACGTTGGGTTCATCTTCACCAACGGCG ACCTCGGCAAGGTGCGCGAGGTGATTGAGGAGAACAGGGTGCCCGCCCCC GCGCGCGTGGGCGCCGTGGCCCCCGTGGACGTGTTCGTGCCCCCCGGCCC TACGGGCTGCGACCCCGGCCAGACGTCCTTCTTCCAGGTCCTGCAGATCC CCACCAAGATTGCCAAGGGCCAGATCGAGATCACCAACGAGGTGAGCGGC GTTGCAGTACAACTTCGCAAAAGCTGAGGTGTTTTTCGCAACGGGTGTGT GTATGGATGACGTGGGTTTGTTTGATGGGGGGGAGAGAGCCAGCGAGGTG AGCGGCAGCTGAGGTTTCTGCAACTGGCGTGTAGGGTTGGGGGGTATGGT GCTTGATTAGCACTGACGGTGCACGGATCAGTGCATGGAAGAGAGTGGGA CACGCAGGCCCTACGGTGGTCCTTTCGCATGGCTAGCGGTGGGTGGGGAT ATTGCTGATGACATCATGAGGCGATAGTTGGCTCGCAAACAGGGGGAGCG CACACGGCAACGGCGATGCGCGCATGCCAACATTTCAGGCAGTCATTGCG CTCACTGGCGACACTGAAATTGTTGAACATCCCCCACAATAACGTCATGC GACAAACACAATACAGAAGCTGTGGCCTGGCCTGTACTCTACACCCTTGC TAGCGTTGATCACGCACTCTTGAACCCGCAACTGCATTTGACCTCTGGAA CCCGATCGCCACCGGCACCACAGCGTCCCTACTGCACCTGTGCGCCTTCT CAACCCCCCTTTCCCCTCCCCCCCAACCCCCCAGGTGCACCTCGTGAAGA AGGGCGACAAGGTCGGCAACTCGGAGGCGGTCCTCCTCACGCGCCTGTCC ATCCGCCCCTTCACGTACGGTCTCGTCATCGAGCTTGTGTACGACAACGG GTCCATCTTCGAGGCGGCAGTGCTCGACCTGACGGACGACGACCTGCGCG CGCGCTTCGTAGGCGCCGTGCGCAACGTCGCCGCCGCGTCGCTCGCGCTC GGCTACCCCACGCTCGCCTCGCTGCCGCACTCCATCGCCAACGCCTTCAA GGCGCTGGTGGCGGTCGCCGTGCAGTGCCCGGGCGTGACGTTCGCGCAGG CGGAGCCGTTCAAGAAGCTGCTGCCGGCGCCCGCGGGCGCAGCGGCGGCA GCGGCGCCCACGGCGGCGGAGGAGGAGGAGGAGGAGTGAGTCACCGCTTG AACTTGCCCTTCGCTGGCGGAGGGGAGGTTTTGGCGGGGGACCGGGAGCA GCGCTGCACAGCTGTTGAATGCATGTGTGCTGAGGGGGGAGGGGAGGGGG CGGCGCCCCAGCGGCTGCCTGAATGAGACACGCGTGATGCGGTTGGAGAC G
back to top

Coding sequence (CDS) from alignment at Contig_89:401523..404473+

>mRNA_12820 ID=mRNA_12820|Name=jgi.p|Trimin1|96461|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_89:401523..404473+ (Tribonema minus UTEX_B_3156 )
ATGCCTCTGTCCGCTGAGCGTAAGGAATGGTACTTCAAGCGCCTTGAGGA
GCTGCTGGGCTCCTACTCCAAGATCCTGCTGGTGCAGTGCGACAATGTCG
GCTCCCGCCAGATGGCCCAGATCAGGCTGGCGCTGCGCGGCCAGGCCGTG
GTGCTGCTGGGAAAGAACACCATGATCCGCAAGATCCTAACCAACTACAT
CAAGCAGAACCCTGGTCACCCCTACGAGAACCTGATCCCCCGCGTCAGGG
GCAACGTTGGGTTCATCTTCACCAACGGCGACCTCGGCAAGGTGCGCGAG
GTGATTGAGGAGAACAGGGTGCCCGCCCCCGCGCGCGTGGGCGCCGTGGC
CCCCGTGGACGTGTTCGTGCCCCCCGGCCCTACGGGCTGCGACCCCGGCC
AGACGTCCTTCTTCCAGGTCCTGCAGATCCCCACCAAGATTGCCAAGGGC
CAGATCGAGATCACCAACGAGGTGCACCTCGTGAAGAAGGGCGACAAGGT
CGGCAACTCGGAGGCGGTCCTCCTCACGCGCCTGTCCATCCGCCCCTTCA
CGTACGGTCTCGTCATCGAGCTTGTGTACGACAACGGGTCCATCTTCGAG
GCGGCAGTGCTCGACCTGACGGACGACGACCTGCGCGCGCGCTTCGTAGG
CGCCGTGCGCAACGTCGCCGCCGCGTCGCTCGCGCTCGGCTACCCCACGC
TCGCCTCGCTGCCGCACTCCATCGCCAACGCCTTCAAGGCGCTGGTGGCG
GTCGCCGTGCAGTGCCCGGGCGTGACGTTCGCGCAGGCGGAGCCGTTCAA
GAAGCTGCTGCCGGCGCCCGCGGGCGCAGCGGCGGCAGCGGCGCCCACGG
CGGCGGAGGAGGAGGAGGAGGAGTGA
back to top