mRNA_12791 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351388
Unique NamemRNA_12791
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: A0A835YJJ0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJJ0_9STRA)

HSP 1 Score: 1321 bits (3418), Expect = 0.000e+0
Identity = 922/922 (100.00%), Postives = 922/922 (100.00%), Query Frame = 1 
Query:    1 MNSPEPRRAQQPQHQQQTEETLIRGADGSKQRQVTIDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAIGAPATDPAAADADLTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEPYLHVAFTEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRASDAAVXXXXXXXXXXXMRGEGLELPXXXXXXXXXXXXXXXXXXXALSPSCALRARTKSTCSRISTDATSVLSREDSVELMRQRLGGSGARRHRTLYTDSXXXXXXXXXXXXXXXXXXXXGRSQSAGHVRSGSXXXXXXXXXXXXXXXXXSSTVGDVGVGPTVNSPVPVAVAAEAHTTSLPDVNTRSVATAPVPPAGKASVTRFVRSTWRLPRRRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGALAWVRSHASLNSARSSAGGKRGAAVAADALPPIAQPLRRALSRQRTASTPHSPVSPMSTADGGGGGALSWLRGSSSFIHESGGARRRGHRRARTADSLPAYDKLVPVVPDTPSSVGGCSTAAPAHGNVKALADTAEEPCDGXXXXXXXXXXXXXXXXXXXXXXGLHWLRRPRGSATRATPXXXXXXXXXXXXXXXXXXXXXXXXXRPRRGGGDAETCSRSSRLSGSSGLSALLRVLPRRA 2766
            MNSPEPRRAQQPQHQQQTEETLIRGADGSKQRQVTIDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAIGAPATDPAAADADLTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEPYLHVAFTEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRASDAAVXXXXXXXXXXXMRGEGLELPXXXXXXXXXXXXXXXXXXXALSPSCALRARTKSTCSRISTDATSVLSREDSVELMRQRLGGSGARRHRTLYTDSXXXXXXXXXXXXXXXXXXXXGRSQSAGHVRSGSXXXXXXXXXXXXXXXXXSSTVGDVGVGPTVNSPVPVAVAAEAHTTSLPDVNTRSVATAPVPPAGKASVTRFVRSTWRLPRRRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGALAWVRSHASLNSARSSAGGKRGAAVAADALPPIAQPLRRALSRQRTASTPHSPVSPMSTADGGGGGALSWLRGSSSFIHESGGARRRGHRRARTADSLPAYDKLVPVVPDTPSSVGGCSTAAPAHGNVKALADTAEEPCDGXXXXXXXXXXXXXXXXXXXXXXGLHWLRRPRGSATRATPXXXXXXXXXXXXXXXXXXXXXXXXXRPRRGGGDAETCSRSSRLSGSSGLSALLRVLPRRA
Sbjct:    1 MNSPEPRRAQQPQHQQQTEETLIRGADGSKQRQVTIDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAIGAPATDPAAADADLTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEPYLHVAFTEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRASDAAVXXXXXXXXXXXMRGEGLELPXXXXXXXXXXXXXXXXXXXALSPSCALRARTKSTCSRISTDATSVLSREDSVELMRQRLGGSGARRHRTLYTDSXXXXXXXXXXXXXXXXXXXXGRSQSAGHVRSGSXXXXXXXXXXXXXXXXXSSTVGDVGVGPTVNSPVPVAVAAEAHTTSLPDVNTRSVATAPVPPAGKASVTRFVRSTWRLPRRRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGALAWVRSHASLNSARSSAGGKRGAAVAADALPPIAQPLRRALSRQRTASTPHSPVSPMSTADGGGGGALSWLRGSSSFIHESGGARRRGHRRARTADSLPAYDKLVPVVPDTPSSVGGCSTAAPAHGNVKALADTAEEPCDGXXXXXXXXXXXXXXXXXXXXXXGLHWLRRPRGSATRATPXXXXXXXXXXXXXXXXXXXXXXXXXRPRRGGGDAETCSRSSRLSGSSGLSALLRVLPRRA 922
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: A0A421FNC0_9STRA (Protein kinase domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FNC0_9STRA)

HSP 1 Score: 343 bits (881), Expect = 1.220e-103
Identity = 179/384 (46.61%), Postives = 258/384 (67.19%), Query Frame = 1 
Query:  106 IDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAI---------------GAPATDPAAADAD---LTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEPYLHV-----AFTEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRA 1188
            + G  F+V +RY+ L  LG+GS+G+VC A+D  TG SVAIKK++P++  AVDA++ LRE+++L+  G H NI+++H++S + KDD +YI+M+L+ +D+HRV  S QPLS+ H   F+ QLLRGV +LH++GVLHRD+KP NLL+S+              L+I+DFGLAR I                APA    A  +D   +TEHVVTRWYR PELML  +  YD +VDMWSVGC+FAE+LGRK +FPG+NFLHQL LIF+V+GAP    T  I+   A++FLRS+  ++  P++  FP ASEAA+DLL  LL FDPAKR++A+ AL+H + +             +P P + VD SF++   +   ++ALI++EV+ ++++
Sbjct:   27 VYGSVFKVSSRYQFLNPLGKGSYGIVCAAKDHETGQSVAIKKVTPMAKRAVDAKHTLREVLLLQFLGKHPNIISIHNLSTNLKDDELYIVMDLMDTDMHRVIQSSQPLSDAHAKYFLHQLLRGVKYLHDNGVLHRDLKPGNLLLSKTCQ-----------LKIADFGLARKIPRCVATSSNLPERPRSAPAMSSNARVSDRPPMTEHVVTRWYRAPELMLQPDGLYDQSVDMWSVGCIFAEILGRKALFPGKNFLHQLTLIFDVIGAPPPEATTRIQSSQAQRFLRSLDRKSKVPFRTLFPNASEAAVDLLDRLLEFDPAKRISAQDALAHPYMQDIERKYRNRSGGIDPPPLMRVDFSFDSKNLSNMDLRALIVKEVDNHRKS 399
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: H3G6P2_PHYRM (Protein kinase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G6P2_PHYRM)

HSP 1 Score: 340 bits (872), Expect = 4.070e-103
Identity = 177/361 (49.03%), Postives = 252/361 (69.81%), Query Frame = 1 
Query:  106 IDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAIGAPATDPAAADADLTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPK-PWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEP----YLHVAF-TEPEPFLGVDLSFENPGTTVKHIKALIMREV 1170
            + G  F+V +RY+ L  LG+GS+G+VC A+D  TG  VAIKK++P++   VDA++ LRE+++L+  G H N++++H++S + KDD +YI+M+L+ +D+HRV  S QPLS+ H   F+ QLLRGV +LH++GVLHRD+KP NLL+S+              L+I+DFGLAR I   A D       +TEHVVTRWYR PELML  +  YD +VDMWSVGC+FAE+LGRK +FPG+NFLHQL LIF+V+GAPAA  T  I+   A++FL+S+ G+ PK P++  FP ASE+A+DLL  +L FDPAKR++A+ AL+H + +     + H +   EP P +  D SF+    T   ++ALI++EV
Sbjct:    3 VYGSVFKVSSRYQFLNPLGKGSYGVVCAAKDRETGQCVAIKKVTPMAKRTVDAKHTLREVLLLQHLGKHPNVISIHNLSANVKDDELYIVMDLMDTDMHRVIQSSQPLSDAHAKYFLHQLLRGVKYLHDNGVLHRDLKPGNLLLSKTCQ-----------LKIADFGLARKIPRGAAD----RPPMTEHVVTRWYRAPELMLQPDGLYDQSVDMWSVGCIFAEILGRKALFPGKNFLHQLTLIFDVIGAPAAGATTKIQSSQAQRFLQSL-GKKPKVPFRSIFPSASESAMDLLDRMLEFDPAKRISAQDALAHPYMQEMERKHRHRSGGVEPPPPMRADFSFDLKNLTKMDLRALIVKEV 347
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: A0A835Z9A0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9A0_9STRA)

HSP 1 Score: 333 bits (855), Expect = 8.240e-100
Identity = 178/367 (48.50%), Postives = 240/367 (65.40%), Query Frame = 1 
Query:   82 GSKQRQVTIDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARA--IGAPATDPAAADADLTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEPYLHVAFTEPEP--FLGVDLSFENPGTTVKHIKALIMREV 1170
            G ++    I G  F V +RYR L+A+G+GS+G+VC A D  T   VAIKKI+P++  AVDA++ LREI ++R  G+H NI+++ DV+    DD +YI+MELL SDLHR+  S QPLS+ H   FM QLLRGV  LH++ ++HRD+KP NLLV++              LRI+DFGLAR   +G  A      D  +TEHVVTRWYRPPELML  +  Y  AVD+WSVGC+FAELLGR P+FPG NF+ QL LIF+V+G+P+  E  HI+   AR+FL S+ G+  +P+   FP+ASE A+DLL  LLVFDP KRL+   AL H +F+          +P   +G++  FE+       +K LI++EV
Sbjct:   19 GLREVSYQILGHVFTVESRYRDLKAVGKGSYGIVCSALDLRTEKRVAIKKITPMAQQAVDAKHVLREIRLMRYLGVHPNIISLEDVAVREFDDELYIVMELLDSDLHRIIQSAQPLSDAHHRYFMYQLLRGVKFLHDNRIIHRDLKPGNLLVTKSCQ-----------LRITDFGLARERPLGRGAGPDEEVDDPMTEHVVTRWYRPPELMLCPDGLYTYAVDLWSVGCIFAELLGRAPLFPGTNFVDQLTLIFDVVGSPSQHEVAHIRNNQARRFLDSMAGKDKQPYAALFPQASEQAIDLLEHLLVFDPPKRLSVADALDHPYFDALRTTEGLREDPPVAVGLEFDFESQPMARLQLKQLILQEV 374
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: A0A7S3XUM8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUM8_HETAK)

HSP 1 Score: 332 bits (851), Expect = 2.140e-99
Identity = 181/372 (48.66%), Postives = 239/372 (64.25%), Query Frame = 1 
Query:  106 IDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAIGAPATDPAAADAD---LTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEPYLHVAFTEPEPFL---GVDLSFENPGTTVK-HIKALIMREVELYKRASDAA 1200
            I G  FR  A Y  L+A+G+GS+G+VC A D  TG  VAIKKISP++ D VDA++ LREI ++R  G H NI+T+ D+    + D +YI+MELL SDLHR+  S QPLS+ H   FM QLL+GV  +H+  ++HRD+KP NLLV+R              LRI+DFGLAR +   A D    +A+   +TEHVVTRWYRPPELML  +  Y   VD+WS GC+FAE+LGRKP+FPG+NF+HQL LIF+V+GAP A +  HI+   ARKFL SV  +   P+ E FP A+  A+DLL   LVF PA R+T    L H +F+P L    T  EP +   G +  FE   T  +  +K L+MREV+ ++  + AA
Sbjct:   15 ISGTVFRCEAAYHTLKAIGKGSYGVVCSAVDQRTGHKVAIKKISPMAQDIVDAKHVLREIRLMRYLGTHPNIITLEDLWIKEQHDELYIVMELLDSDLHRIIQSSQPLSDAHFRFFMWQLLKGVKFMHDHQIIHRDLKPGNLLVTRNCE-----------LRITDFGLAR-MKPEAQDIHGEEAEEEPMTEHVVTRWYRPPELMLCPDGLYGFDVDIWSSGCIFAEMLGRKPLFPGKNFVHQLTLIFDVIGAPDAEDVAHIRNSQARKFLDSVADRLRVPFAELFPGATAPAVDLLERFLVFHPANRMTIDECLDHPYFDP-LRTGETPSEPPVMSSGFEFDFEADETITRLQMKQLVMREVDSFRAEAQAA 373
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: D0NQD6_PHYIT (Mitogen-activated protein kinase, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQD6_PHYIT)

HSP 1 Score: 342 bits (876), Expect = 7.970e-99
Identity = 176/396 (44.44%), Postives = 264/396 (66.67%), Query Frame = 1 
Query:   70 RGADGSKQRQVTIDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAIGA-----------PATDPAAAD-------ADLTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEP----YLHVAFTEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRAS 1191
            RG+  +      + G  F+V +RY+ L  LG+GS+G+VC A+D  TG  VAIKK++P++    DA++ LRE+++L+  G H N+++VH++S + KDD +YI+M+L+ +D+HRV  S QPLS+ H   F+ QLLRGV +LHE+GVLHRD+KP NLL+S+              L+I+DFGLAR I             P + PAA+        A +TEHVVTRWYR PELML  +  YD +VDMWSVGC+FAE+LGRK +FPG+NFLHQL LIF+V+GAP++ +T+ I+   A++FL+S+  +   P++  FP+ASEAA+DLL  LL FDP  R++A+ AL+H + +     Y +   ++P P +  D SF+    +   ++ALI++EV+ +++++
Sbjct:   14 RGSSSTSSTGFKVYGSLFKVSSRYQFLNPLGKGSYGVVCAAKDRDTGQCVAIKKVTPMAKRTTDAKHTLREVLLLQHLGKHPNVISVHNLSANIKDDELYIVMDLMDTDMHRVIQSSQPLSDAHAKYFLHQLLRGVQYLHENGVLHRDLKPGNLLLSKTCQ-----------LKIADFGLARKIPRGFNAATTTLERPRSAPAASSKAKVPDRAPMTEHVVTRWYRAPELMLQPDGLYDQSVDMWSVGCIFAEILGRKALFPGKNFLHQLTLIFDVIGAPSSEDTMQIQSSQAQRFLKSISKKPKIPFRTLFPKASEAAVDLLDRLLEFDPTTRISAQEALAHPYMQDIERKYRNRGGSDPPPCMRADFSFDLKKLSKLDLRALIVKEVDNHRKST 398
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: A0A0P1AL96_PLAHL (Cmgc mapk protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AL96_PLAHL)

HSP 1 Score: 340 bits (873), Expect = 6.460e-98
Identity = 174/385 (45.19%), Postives = 254/385 (65.97%), Query Frame = 1 
Query:  106 IDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAIGA--------PATDPAAA-------DADLTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEP----YLHVAFTEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRASDAAV 1203
            + G  F+V +RY+ L ALG+GS+G+VC A+D  TG  VAIKK+SP++    DA++ LRE+M+L+  G H N++++H++  + KDD +YI+M+L+ +D+HRV  S QPLS+ H+  F+ QLLRGV +LH++GVLHRD+KP NLL+S+              L+I+DFGLAR I          P + PAA+          +TEHVVTRWYR PELML  +  YD +VDMWSVGC+FAE+LGRK +FPG+NFLHQL LIF ++GAP+   T+ I+   A++FL+S+  +A   ++  FP A+EAA+DLL  +L FDP KR++A+ AL H + +     Y H    +P P +  D SF+    T   ++ALI+ EVE +++    ++
Sbjct:   27 VYGSVFKVSSRYQFLHALGKGSYGIVCAAKDCETGQCVAIKKVSPMTRRTADAKHTLREVMLLQHLGKHPNVISIHNLLANFKDDELYIVMDLMDTDMHRVIQSSQPLSDAHVKYFLHQLLRGVKYLHDNGVLHRDLKPGNLLLSKNCQ-----------LKIADFGLARKIPRTSGSIFERPRSAPAASMKSNSPEQPPMTEHVVTRWYRAPELMLQPDGFYDQSVDMWSVGCIFAEILGRKALFPGKNFLHQLSLIFNIIGAPSPEATIRIQSSQAQRFLKSISKKAKVSFQTLFPTATEAAVDLLERMLEFDPLKRISAQEALEHPYMQEIEQKYRHRGEEDPPPCMRGDFSFDLKSLTKMDLRALIVNEVEHHRKVRSKSI 400
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: W2QR23_PHYPN (CMGC/MAPK protein kinase n=10 Tax=Phytophthora TaxID=4783 RepID=W2QR23_PHYPN)

HSP 1 Score: 337 bits (865), Expect = 2.600e-96
Identity = 172/384 (44.79%), Postives = 261/384 (67.97%), Query Frame = 1 
Query:  106 IDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAI----GAPATD-------PAAAD-------ADLTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEP----YLHVAFTEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRAS 1191
            + G  F+V +RY+ L  LG+GS+G+VC A+D  TG  VAIKK++P++    DA++ LRE+++L+  G H N++++H++S + KDD +YI+M+L+ +D+HRV  S QPLS+ H   F+ QLLRGV +LH++GVLHRD+KP NLL+S+              L+I+DFGLAR I    GA  T+       PAA+        A +TEHVVTRWYR PELML  +  YD +VDMWSVGC+FAE+LGRK +FPG+NFLHQL LIF+V+GAP+   T+ I+   A++FL+S+  ++  P++  FP+A++AA+DLL  +L FDP KR++A+ AL+H + +     Y +    +P P +  D SF+    +   ++ALI++EV+ +++++
Sbjct:   26 VYGSVFKVSSRYQFLNPLGKGSYGVVCAAKDRETGQCVAIKKVTPMAKRTTDAKHTLREVLLLQHLGKHPNVISIHNLSANIKDDELYIVMDLMDTDMHRVIQSSQPLSDAHAKYFLHQLLRGVKYLHDNGVLHRDLKPGNLLLSKTCQ-----------LKIADFGLARKIPRGFGATTTNLERPRSAPAASSKAKVPDRAPMTEHVVTRWYRAPELMLQPDGLYDQSVDMWSVGCIFAEILGRKALFPGKNFLHQLTLIFDVIGAPSPEATMRIQSSQAQRFLKSLGKKSKVPFRTLFPKATDAAVDLLDRMLEFDPTKRISAQEALAHPYMQDIERKYRNRGGVDPPPCMRADFSFDLKNLSKMDLRALIVKEVDNHRKST 398
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: G4ZJM4_PHYSP (Protein kinase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4ZJM4_PHYSP)

HSP 1 Score: 335 bits (859), Expect = 2.910e-96
Identity = 178/387 (45.99%), Postives = 257/387 (66.41%), Query Frame = 1 
Query:  106 IDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAIGA----------PATDPAAADAD----------LTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPK-PWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEP----YLHVAF-TEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRA 1188
            + G  F+V +RY+ L  LG+GS+G+VC A+D  TG  VAIKK+SP++   VDA++ LRE+++L+  G H N++++H++S + KDD +YI+M+L+ +D+HRV  S QPLS+ H   F+ QLLRGV +LH++GVLHRD+KP NLL+S+              L+I+DFGLAR I            P + PAA+             +TEHVVTRWYR PELML  +  YD +VDMWSVGC+FAE+LGRK +FPG+NFLHQL LIF+V+GAP    T  I+   A++FLRS+ G+ PK P++  FP A +AA+DLL  LL FDPAKR++A+ AL H + +     Y H +   +P P +  D SF+    +   ++ALI++EV+ ++++
Sbjct:   25 VYGSVFKVSSRYQFLNPLGKGSYGIVCAAKDRETGQCVAIKKVSPMAKRTVDAKHTLREVLLLQLLGKHPNVISIHNLSTNLKDDELYIVMDLMDTDMHRVIQSSQPLSDAHAKYFLHQLLRGVKYLHDNGVLHRDLKPGNLLLSKTCQ-----------LKIADFGLARKIPRVLGSSGTLERPRSAPAASSGSSSSRILERPPMTEHVVTRWYRAPELMLQPDGLYDQSVDMWSVGCIFAEILGRKALFPGKNFLHQLTLIFDVIGAPPPEATTRIQSSQAQRFLRSL-GRKPKVPFRTLFPNACDAAVDLLDRLLEFDPAKRISAQEALDHPYMQDIERKYRHRSGGVDPPPSMRADFSFDLKNLSKMDLRALIVKEVDNHRKS 399
[Close]
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Match: A0A329SMM0_9STRA (Protein kinase domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SMM0_9STRA)

HSP 1 Score: 336 bits (862), Expect = 8.240e-96
Identity = 178/396 (44.95%), Postives = 264/396 (66.67%), Query Frame = 1 
Query:   70 RGADGSKQRQVTIDGFTFRVPARYRRLRALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLREAGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCVFMLQLLRGVAHLHESGVLHRDIKPANLLVSRXXXXXXXXXXXXXXLRISDFGLARAI----GA-------PATDPAAAD-------ADLTEHVVTRWYRPPELMLSRNRAYDAAVDMWSVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARKFLRSVQGQAPK-PWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRFFEP----YLHVAFTEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRA 1188
            RG+ G K     + G  F+V +RY+ L  LG+GS+G+VC A+D  TG  VAIKK++P++    DA++ LRE+++L   G H N++++H++S + KDD +YI+M+L+ +D+HRV  S QPLS+ H   F+ QLLRGV +LH++GVLHRD+KP NLL+S+              L+I+DFGLAR I    GA       P + PAA+        A +TEHVVTRWYR PELML  +  YD +VDMWSVGC+FAE+LGRK +FPG+NFLHQL LIF+V+GAP+   T+ I+   A++F+ S+ G+ PK P++  FP+A++AA+DLL  +L FDP KR++A+ AL+H + +     Y      +P P +  D SF+    +   ++ALI++EV+ ++++
Sbjct:   19 RGSPGFK-----VYGSVFKVSSRYQFLNPLGKGSYGVVCAAKDRETGQCVAIKKVTPMAKRTTDAKHTLREVLLLEHLGKHPNVISIHNLSANIKDDELYIVMDLMDTDMHRVIQSSQPLSDAHAKYFLHQLLRGVKYLHDNGVLHRDLKPGNLLLSKTCQ-----------LKIADFGLARKIPRGFGASTTTLERPRSAPAASSKTKVLDRAPMTEHVVTRWYRAPELMLQPDGLYDQSVDMWSVGCIFAEILGRKALFPGKNFLHQLTLIFDVIGAPSPEATIRIQSSQAQRFINSL-GKKPKVPFRTLFPKATDAAVDLLDRMLEFDPTKRISAQEALAHPYMQDIERKYRSRGGVDPPPCMRADFSFDLKNLSKMELRALIVKEVDNHRKS 397
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351388 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJJ0_9STRA0.000e+0100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A421FNC0_9STRA1.220e-10346.61Protein kinase domain-containing protein n=4 Tax=P... [more]
H3G6P2_PHYRM4.070e-10349.03Protein kinase domain-containing protein n=1 Tax=P... [more]
A0A835Z9A0_9STRA8.240e-10048.50Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XUM8_HETAK2.140e-9948.66Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D0NQD6_PHYIT7.970e-9944.44Mitogen-activated protein kinase, putative n=2 Tax... [more]
A0A0P1AL96_PLAHL6.460e-9845.19Cmgc mapk protein kinase n=1 Tax=Plasmopara halste... [more]
W2QR23_PHYPN2.600e-9644.79CMGC/MAPK protein kinase n=10 Tax=Phytophthora Tax... [more]
G4ZJM4_PHYSP2.910e-9645.99Protein kinase domain-containing protein n=4 Tax=P... [more]
A0A329SMM0_9STRA8.240e-9644.95Protein kinase domain-containing protein n=2 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_89contigContig_89:161797..167800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351388|estExt_Genemark1.C_Ctg_890020
DescriptionSerine/Threonine protein kinases, catalytic domain
COG categoryT
Max annot lvl4776|Peronosporales
EggNOG OGsKOG0660@1|root,KOG0660@2759|Eukaryota,3Q88F@4776|Peronosporales
Evalue4.41e-102
Seed ortholog4787.PITG_15298T0
Hectar predicted targeting categoryother localisation
TranscriptId351710
TrackFilteredModels1
ProteinId351388
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351388gene_12791Tribonema minus UTEX_B_3156 geneContig_89 161797..167800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351388Trimin1|351388|estExt_Genemark1.C_Ctg_890020Tribonema minus UTEX_B_3156 polypeptideContig_89 161797..166766 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12791_1exon_12791_1Tribonema minus UTEX_B_3156 exonContig_89 161797..162200 +
exon_12791_2exon_12791_2Tribonema minus UTEX_B_3156 exonContig_89 162729..162843 +
exon_12791_3exon_12791_3Tribonema minus UTEX_B_3156 exonContig_89 163363..163395 +
exon_12791_4exon_12791_4Tribonema minus UTEX_B_3156 exonContig_89 163531..163780 +
exon_12791_5exon_12791_5Tribonema minus UTEX_B_3156 exonContig_89 164082..164267 +
exon_12791_6exon_12791_6Tribonema minus UTEX_B_3156 exonContig_89 164986..167800 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12791CDS_12791Tribonema minus UTEX_B_3156 CDSContig_89 161797..162200 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12791UTR3_12791Tribonema minus UTEX_B_3156 three_prime_UTRContig_89 166767..167800 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12791 ID=mRNA_12791|Name=jgi.p|Trimin1|351388|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3803bp|location=Sequence derived from alignment at Contig_89:161797..167800+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTCCCCGGAGCCTCGCAGAGCCCAGCAACCGCAACATCAACAACA
GACGGAAGAAACTCTGATTCGAGGCGCCGACGGCAGCAAGCAGCGGCAGG
TGACGATCGATGGCTTCACGTTCAGGGTGCCGGCGAGATATCGGAGGCTG
CGGGCGCTGGGGCGTGGCAGTTTCGGTCTCGTGTGCATGGCGCAGGACTC
GGTCACGGGAGGCTCCGTCGCTATCAAAAAAATATCGCCCATCTCGGCCG
ATGCCGTGGACGCCCGATACGCGCTGAGGGAGATCATGGTGCTGCGGGAG
GCGGGCCTGCACGAGAACATCGTGACAGTGCATGACGTCAGCTACGACTC
CAAAGACGACGCCGTCTACATCATCATGGAACTGCTGGCTAGCGACCTGC
ACAGGGTCAACGCCTCGCCCCAGCCGCTATCCGAGGACCACCTCTGCGTC
TTCATGCTGCAGCTGCTGCGCGGCGTCGCGCACCTCCACGAGAGCGGCGT
GCTGCACCGCGACATCAAGCCCGCGAACCTCCTGGTCTCGCGCGAGTGCG
ACCCCGCCAACCTCCTGGTCTCGCGCGAGTGCGACCTGCGCATCTCCGAC
TTCGGCCTCGCGCGCGCGATAGGCGCGCCCGCGACCGACCCCGCCGCTGC
CGACGCCGACCTGACGGAGCACGTGGTCACGCGCTGGTACCGCCCCCCTG
AGCTGATGCTCAGCAGGAACAGGGCGTACGACGCCGCGGTTGACATGTGG
AGCGTGGGCTGCGTCTTCGCGGAGCTGCTCGGGCGCAAGCCCATGTTTCC
AGGCCGCAACTTCCTGCACCAGTTGAAGTTGATCTTCGAGGTCCTCGGCG
CGCCGGCCGCGCCGGAGACGGTCCACATCAAGGGCGTGCACGCGCGCAAG
TTCCTGCGCAGCGTGCAGGGGCAGGCGCCTAAGCCCTGGAAGGAGGCGTT
TCCGGAGGCGTCGGAGGCGGCGCTGGATCTGCTCTCAGGCCTCCTGGTTT
TCGACCCCGCGAAGCGCCTGACCGCGCGCGCCGCGCTCTCGCACCGCTTC
TTTGAGCCCTACCTACACGTCGCGTTCACGGAGCCGGAGCCGTTCCTCGG
CGTGGACCTGTCCTTCGAGAACCCCGGGACGACCGTCAAGCACATCAAGG
CGCTCATCATGCGCGAGGTGGAGCTGTACAAGCGCGCCTCGGACGCGGCG
GTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGATCATGCGCGGCGAGGG
CCTGGAGTTGCCGCCTGAGAAGGCAGCGGCGGCGTTCGGCGGCAGCAGCG
GCAGCGGCGGCGGCGGCGGCGCGCTGTCGCCGTCGTGCGCGCTGCGCGCG
CGCACCAAGTCCACGTGCTCGCGCATCAGCACCGACGCGACGTCCGTGCT
GAGCCGCGAAGACAGCGTCGAGCTCATGCGGCAGCGCCTCGGCGGCAGCG
GCGCGCGCCGCCACCGCACGCTGTACACAGACAGCAGCAGCAGCAGCAGC
GGCAGCAGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGTGCCGGCCG
CAGCCAGTCCGCGGGCCACGTTCGCAGCGGCAGCAGCAGCAGCAGCAGCA
GCGGCAGCAGCAGCGTTGGCGGCGACAATGGGGGCAGCAGCACCGTAGGC
GACGTTGGCGTCGGTCCCACGGTTAACAGCCCAGTGCCTGTAGCAGTTGC
GGCGGAGGCGCACACCACTTCATTGCCGGATGTCAACACGCGCAGCGTCG
CTACCGCTCCTGTGCCACCTGCCGGCAAAGCCAGCGTGACGCGGTTCGTG
CGCTCGACGTGGCGCCTGCCGCGGCGGCGCCCCGCGGCCGCCGCTGCTGC
TGCTGCTGCGGCGGCGCCTGCGCATGACTCCCAGGAGCCTGCGGCGGCGG
CAACCGCGGCGCCCGCCGCTGCTGCGCAGGTCTCCCGACTGTCCTCCGCC
AACCTGGCGCTGCTGGAGAGCAGTAGGGCTGGCGGCGCTGCGGGCGGCGG
CGCTGATGCCAGCCACAGCCGCGGCGGCGGCGGCGGCAGCGGTGCGCTGG
CGTGGGTGCGCAGTCACGCGTCGCTCAATAGCGCGCGCTCCTCCGCGGGC
GGCAAGCGCGGCGCGGCGGTGGCGGCGGACGCGCTGCCGCCCATCGCGCA
GCCGCTGCGGCGCGCGCTCTCCCGGCAGCGCACGGCGAGCACGCCGCACA
GCCCGGTCTCGCCCATGTCCACGGCTGATGGCGGCGGCGGCGGCGCGCTG
TCGTGGCTGCGCGGCAGCTCGTCGTTCATTCACGAGAGCGGCGGTGCGCG
CCGCCGCGGCCACCGTCGCGCGCGCACCGCCGACTCGCTGCCCGCGTACG
ACAAGCTCGTCCCCGTCGTCCCCGACACGCCGTCGTCCGTCGGCGGCTGC
AGCACCGCGGCCCCCGCGCACGGCAACGTCAAGGCACTGGCAGACACCGC
GGAGGAGCCCTGCGATGGCGGCGGCGGCGGCGGCGGTGCTGCTGCCACTG
GCGGCAGCAGCAGCGGCGGCGGCGGCGGACGTCGCGGGCTCCACTGGCTG
CGGCGACCGCGCGGCTCAGCCACGCGCGCGACGCCGGCGGCGGCGGCGGC
GGCAGCAGCAGCGCCGTTTCACACCACCAGCGGCTTTGTGGCCGGCGGCA
GCAGCGTCGTCAGGCCACGCCGCGGCGGCGGCGACGCTGAGACATGCAGC
CGATCGTCGCGCTTGTCCGGGTCCAGCGGTCTGTCGGCGCTGCTGCGCGT
GCTGCCGCGGCGCGCGTGAGCCTCTGCCAGCGACGTTGGTTCTGGCCATC
CTCTTTAGTGGCGGCTGTGGCAGCGGCGGCGGCGGCGGCAACAGCGGCAG
CAGCGGCGGCAGTGGCTCGCAGTGCTGCCAGCAATGTTGCACTGGTTTGC
AGTGCTGTTGAGCACTGCAGCATTGTTCAGACAGGCAGGCGCCGCGCAGC
CGCTGACCGCAAGGGGCGGGGGTCTTGTAAGTTCGTCTGTTGTACATACT
TTTTGCGTGGGCGGGTTTACACACACACTGGCGGCTTGAGACGCGCCGCG
GTGACGGTGGCGGCGGCGGCAGCAGTGGCGGCGGCCGCAGCGGCGGCGGC
AGCGGCGATTCCTTGCAGCGTTGTTGCCGCCAGCGCCGTTGCCGCCAATG
CGTGCATGCGCGCGCGCGTCACATGGTGCAGGTGATGAGCTCCCACTTGC
ACTCTGGCGGCAGCGCGCGCTTGCGCTGACCCCAGCCCTAGTTGTGCGCA
GTAGGTAGGTACCTCTTCCAGTTGGCCACACGCGCGCGCAGAACGGGGAG
TTCGCTGTCTTGATCCCCGCGCACGCGCGTGCGCGCATCTGTGTTCTTTG
CTGTGCCGGGGGGGAGCCCCTTCACGGGGTCCCCCTCCGCTCAGCGGAGC
GTCACAACCTCACACACACTTCAAGTGTCATTTTGGCGGCGAGTCCGGAC
AGTTCCACATGCCCCCGCATCGCCGGCGGCCACAGGGTTAGGGTTAGGGT
TAGGCCAACCCTAATTTCAGATCTAGCCCTAATCCACAGCACCACACACA
CACCACCCTAGAGCAGGAGATCCCCAGCAGTTTGTCACTTAGCTTGCGGA
GGAGGGACTGCCCCCCCCCCCCCGTTCTCGAGCGCCGCCTTTACACAAAA
GTACTGATAGCCAAGTGTCCCGTGATGCAAGTGAGCGTGTGAGGCTGGTT
TGTCGGGCATGGAGAGCGTGGTATTTTGCCATAGATGGCTCGCCCTGGGA
GCCCTGTCTGTTATGAATGTCTTGCCACATGAATGGCACATGTTTCGACC
CCC
back to top

protein sequence of jgi.p|Trimin1|351388

>Trimin1|351388|estExt_Genemark1.C_Ctg_890020 ID=Trimin1|351388|estExt_Genemark1.C_Ctg_890020|Name=jgi.p|Trimin1|351388|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=923bp
MNSPEPRRAQQPQHQQQTEETLIRGADGSKQRQVTIDGFTFRVPARYRRL
RALGRGSFGLVCMAQDSVTGGSVAIKKISPISADAVDARYALREIMVLRE
AGLHENIVTVHDVSYDSKDDAVYIIMELLASDLHRVNASPQPLSEDHLCV
FMLQLLRGVAHLHESGVLHRDIKPANLLVSRECDPANLLVSRECDLRISD
FGLARAIGAPATDPAAADADLTEHVVTRWYRPPELMLSRNRAYDAAVDMW
SVGCVFAELLGRKPMFPGRNFLHQLKLIFEVLGAPAAPETVHIKGVHARK
FLRSVQGQAPKPWKEAFPEASEAALDLLSGLLVFDPAKRLTARAALSHRF
FEPYLHVAFTEPEPFLGVDLSFENPGTTVKHIKALIMREVELYKRASDAA
VVAAAAAAAAAIMRGEGLELPPEKAAAAFGGSSGSGGGGGALSPSCALRA
RTKSTCSRISTDATSVLSREDSVELMRQRLGGSGARRHRTLYTDSSSSSS
GSSGGGGGGGGGGGAGRSQSAGHVRSGSSSSSSSGSSSVGGDNGGSSTVG
DVGVGPTVNSPVPVAVAAEAHTTSLPDVNTRSVATAPVPPAGKASVTRFV
RSTWRLPRRRPAAAAAAAAAAAPAHDSQEPAAAATAAPAAAAQVSRLSSA
NLALLESSRAGGAAGGGADASHSRGGGGGSGALAWVRSHASLNSARSSAG
GKRGAAVAADALPPIAQPLRRALSRQRTASTPHSPVSPMSTADGGGGGAL
SWLRGSSSFIHESGGARRRGHRRARTADSLPAYDKLVPVVPDTPSSVGGC
STAAPAHGNVKALADTAEEPCDGGGGGGGAAATGGSSSGGGGGRRGLHWL
RRPRGSATRATPAAAAAAAAAPFHTTSGFVAGGSSVVRPRRGGGDAETCS
RSSRLSGSSGLSALLRVLPRRA*
back to top

mRNA from alignment at Contig_89:161797..167800+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12791 ID=mRNA_12791|Name=jgi.p|Trimin1|351388|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6004bp|location=Sequence derived from alignment at Contig_89:161797..167800+ (Tribonema minus UTEX_B_3156 )
ATGAACTCCCCGGAGCCTCGCAGAGCCCAGCAACCGCAACATCAACAACA
GACGGAAGAAACTCTGATTCGAGGCGCCGACGGCAGCAAGCAGCGGCAGG
TGACGATCGATGGCTTCACGTTCAGGGTGCCGGCGAGATATCGGAGGCTG
CGGGCGCTGGGGCGTGGCAGTTTCGGTCTCGTGTGCATGGCGCAGGACTC
GGTCACGGGAGGCTCCGTCGCTATCAAAAAAATATCGCCCATCTCGGCCG
ATGCCGTGGACGCCCGATACGCGCTGAGGGAGATCATGGTGCTGCGGGAG
GCGGGCCTGCACGAGAACATCGTGACAGTGCATGACGTCAGCTACGACTC
CAAAGACGACGCCGTCTACATCATCATGGAACTGCTGGCTAGCGACCTGC
ACAGGTGCGATTGTGACATAAGTGTGCAACATCATTGGCACGAGGACTGC
TCATCTATATCTATGTAGTATTTTGAGTCATCAATGTCATGCTATTGCTA
CCAGCAGCAATGCACCTGCCAGTAGGGGTCGTAACCCCCCAGAACCTCAT
CCATCACCCACAGATGTCAGAATCCACGCACGATGCACTTGCGCGCACCT
GCAGACGCTGCTGTCACTGGTTGTGTCTTTCTGCCTTTCTCGGCACGCCA
CGCGCGTAATCGCATGATTGGCTGCAGAGCTCCCTCCGTGTTGACTTTCT
GACACAAGCGGCATCCTCTCTCGTAGGCGTGACGCACACTGTTTAGCGTC
ATTGTAGAGACTGCGCGCAGGCGCAGCCCGCTCGATGTACAACAACAGCA
CACAGACACACGCGCGTGCTCACAAATGCTGCCCGTGCACACAACCTCAC
AACACATGTCGTTTGCATCCTCTGCACCGCAACTATCGCTGACCCCCCCC
CCCCCCCCCCCCCCGCCCTGCCCCACCCCCAGGGTCAACGCCTCGCCCCA
GCCGCTATCCGAGGACCACCTCTGCGTCTTCATGCTGCAGCTGCTGCGCG
GCGTCGCGCACCTCCACGAGAGCGGCGTGCTGCACCGCGACATCAAGGTG
AGCGCTGCTGCCTCGAATGCTAAATAGCGTGCTCTACAGAAGTCTTTTGA
TCAGCACCCATGCCTCGAATGCTAAGTCGCGTGCACGCAGAAGTCTTCTG
ACTAGCACCCATGTTTCGAATGCTAAGTAGCGTGCACACAGCAGTCTTTT
GACTTGCACCCATGCCTCGAATGCTAAATAGCGTGCGCACAGAAGCCTCT
TGATTGCTGTGGATATGGTGGCACTGTTTGACTGGTGGCCAATGACAGCA
GCAGCGGCGACCACGGTCATTTGTGGAAGGCACTTGGGGCTAATCACACC
TTGTCACCTAGAGCTCTACGATCTTTTGATTCGTTTCCATCAAGGTGAGC
GCTGCGCCACTAGTGCGGTTGTTCCGTGCGCGTGCGCGGTTCGCATATGG
CGACATCGGAGAATATCATGATGCAGACGTTCGCTCTGGCCTTGCTGAGC
ATCACCCGCGCTCTGGCTGACGCAACGCCGCGTTTACGCACTTCACCCTT
CTCAATGCCGCCACAGCCCGCGAACCTCCTGGTCTCGCGCGAGTGCGACG
TGCGCATCTCCGACTTCGGCCTCGCGCGCGCGATCGGCAGATGTTCGCTC
TCTGACTTTGCTGAGCATCACCCGCGCACCAGCTGACGCGAGCGCCACAT
TTACGCACCCACGCTTCTCTCAACGCTGCGACAGCCCGCCAACCTCCTGG
TCTCGCGCGAGTGCGACCTGCGCATCTCCGACTTCGGCCTCGCGCGCGCG
ATAGGCGCGCCCGCGACCGACCCCGCCGCTGCCGACGCCGACCTGACGGA
GCACGTGGTCACGCGCTGGTACCGCCCCCCTGAGCTGATGCTCAGCAGGA
ACAGGGCGTACGACGCCGCGGTTGACATGTGGAGCGTGGGCTGCGTCTTC
GCGGAGCTGCTCGGGCGCAAGCCCATGTTTCCAGGTGCGCAAGCGGCGCT
TGCTTCTTGTTGTTGTTAGCGCGGCGTGAGCGCGGCGCAGAACGCGTACG
CGAGTGGACTCGCAGAGTGCGGCGAGCCGCGTACACCTGCTAGCGCGGCT
TGGCAGCACGTAGAAATCGCTCGTGGAGTGCGTGGGGGAGCTTACGCAGC
GAGCTGCCTGAGAAGCGAGACTGCGCTGGCAGACGCCTCCCTCCTCTGCG
CTGTGCCGTGGGGCAGCAAGCAGAGTGCGTGTGCAGCCTGCTCACACACC
CCCCCCTCCCCACCCCCCACACCCCCCCTCTTCAGGCCGCAACTTCCTGC
ACCAGTTGAAGTTGATCTTCGAGGTCCTCGGCGCGCCGGCCGCGCCGGAG
ACGGTCCACATCAAGGGCGTGCACGCGCGCAAGTTCCTGCGCAGCGTGCA
GGGGCAGGCGCCTAAGCCCTGGAAGGAGGCGTTTCCGGAGGCGTCGGAGG
CGGCGCTGGATCTGCTCTCAGGTGCGCGCGCGCGCTCGGGTGTCTGTCTC
GCTTTTGGGGGGGCTGCCTCTGTAGTGCTTGTCTCGTTCGTGAGGCCGTC
TCTGGAGTGCCGGCGGCGCTGCTGACATATCCTAATGTAGGTGCGTGTGG
AGGCGGCGCTGCCGCTGCCGAGGCATCGGAGACTGCTCTGGATCTGCTCT
CAGGTGGGCACGCGCGCGCGGGCACTGCGGCTGTCTGGCCCGCTTAGTGG
GGGATTGTCGAAGTAGTGTTGGTGGTGATGTGGAGCGCAGCTGCGACCCC
TAACCCTAACCCTAACCCTAAGAAAGCGTTCGCGCACCTTGAGGGGGGCG
CTAGCGGGGGGGCTTGCCGGCCTGTACCAAGCGCCGTTGTTGATGGTATA
CTATGTTGACCGTCAGCAGGCGAGCTCGCTGGCGTCGCGCGCAGGCGACT
GGCACGCAGCCGATGGATATTGCGATGACACATCTGCCGGTGTTGCACAA
ACGCATGGTCCTCAACCACAGTCTGCTTAACTCCACGACTTCCGCGCGGC
ACGCACGCTGACAGCACCCCACACGGTGCTTACCGCTACGCGCACACGTG
ATTTTGAATGCGCCCGGACGCCGGTGGCGCTCCTTGAAGCCAAGTCTGAT
GAGCGCTGCGTGCCGCACAACCGCACTCAACATAAATCTATGCCTGACAC
GTGCGCGCGTCACCCCCCCCCCCCTCCTCCCTCATGCAGGCCTCCTGGTT
TTCGACCCCGCGAAGCGCCTGACCGCGCGCGCCGCGCTCTCGCACCGCTT
CTTTGAGCCCTACCTACACGTCGCGTTCACGGAGCCGGAGCCGTTCCTCG
GCGTGGACCTGTCCTTCGAGAACCCCGGGACGACCGTCAAGCACATCAAG
GCGCTCATCATGCGCGAGGTGGAGCTGTACAAGCGCGCCTCGGACGCGGC
GGTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGATCATGCGCGGCGAGG
GCCTGGAGTTGCCGCCTGAGAAGGCAGCGGCGGCGTTCGGCGGCAGCAGC
GGCAGCGGCGGCGGCGGCGGCGCGCTGTCGCCGTCGTGCGCGCTGCGCGC
GCGCACCAAGTCCACGTGCTCGCGCATCAGCACCGACGCGACGTCCGTGC
TGAGCCGCGAAGACAGCGTCGAGCTCATGCGGCAGCGCCTCGGCGGCAGC
GGCGCGCGCCGCCACCGCACGCTGTACACAGACAGCAGCAGCAGCAGCAG
CGGCAGCAGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGTGCCGGCC
GCAGCCAGTCCGCGGGCCACGTTCGCAGCGGCAGCAGCAGCAGCAGCAGC
AGCGGCAGCAGCAGCGTTGGCGGCGACAATGGGGGCAGCAGCACCGTAGG
CGACGTTGGCGTCGGTCCCACGGTTAACAGCCCAGTGCCTGTAGCAGTTG
CGGCGGAGGCGCACACCACTTCATTGCCGGATGTCAACACGCGCAGCGTC
GCTACCGCTCCTGTGCCACCTGCCGGCAAAGCCAGCGTGACGCGGTTCGT
GCGCTCGACGTGGCGCCTGCCGCGGCGGCGCCCCGCGGCCGCCGCTGCTG
CTGCTGCTGCGGCGGCGCCTGCGCATGACTCCCAGGAGCCTGCGGCGGCG
GCAACCGCGGCGCCCGCCGCTGCTGCGCAGGTCTCCCGACTGTCCTCCGC
CAACCTGGCGCTGCTGGAGAGCAGTAGGGCTGGCGGCGCTGCGGGCGGCG
GCGCTGATGCCAGCCACAGCCGCGGCGGCGGCGGCGGCAGCGGTGCGCTG
GCGTGGGTGCGCAGTCACGCGTCGCTCAATAGCGCGCGCTCCTCCGCGGG
CGGCAAGCGCGGCGCGGCGGTGGCGGCGGACGCGCTGCCGCCCATCGCGC
AGCCGCTGCGGCGCGCGCTCTCCCGGCAGCGCACGGCGAGCACGCCGCAC
AGCCCGGTCTCGCCCATGTCCACGGCTGATGGCGGCGGCGGCGGCGCGCT
GTCGTGGCTGCGCGGCAGCTCGTCGTTCATTCACGAGAGCGGCGGTGCGC
GCCGCCGCGGCCACCGTCGCGCGCGCACCGCCGACTCGCTGCCCGCGTAC
GACAAGCTCGTCCCCGTCGTCCCCGACACGCCGTCGTCCGTCGGCGGCTG
CAGCACCGCGGCCCCCGCGCACGGCAACGTCAAGGCACTGGCAGACACCG
CGGAGGAGCCCTGCGATGGCGGCGGCGGCGGCGGCGGTGCTGCTGCCACT
GGCGGCAGCAGCAGCGGCGGCGGCGGCGGACGTCGCGGGCTCCACTGGCT
GCGGCGACCGCGCGGCTCAGCCACGCGCGCGACGCCGGCGGCGGCGGCGG
CGGCAGCAGCAGCGCCGTTTCACACCACCAGCGGCTTTGTGGCCGGCGGC
AGCAGCGTCGTCAGGCCACGCCGCGGCGGCGGCGACGCTGAGACATGCAG
CCGATCGTCGCGCTTGTCCGGGTCCAGCGGTCTGTCGGCGCTGCTGCGCG
TGCTGCCGCGGCGCGCGTGAGCCTCTGCCAGCGACGTTGGTTCTGGCCAT
CCTCTTTAGTGGCGGCTGTGGCAGCGGCGGCGGCGGCGGCAACAGCGGCA
GCAGCGGCGGCAGTGGCTCGCAGTGCTGCCAGCAATGTTGCACTGGTTTG
CAGTGCTGTTGAGCACTGCAGCATTGTTCAGACAGGCAGGCGCCGCGCAG
CCGCTGACCGCAAGGGGCGGGGGTCTTGTAAGTTCGTCTGTTGTACATAC
TTTTTGCGTGGGCGGGTTTACACACACACTGGCGGCTTGAGACGCGCCGC
GGTGACGGTGGCGGCGGCGGCAGCAGTGGCGGCGGCCGCAGCGGCGGCGG
CAGCGGCGATTCCTTGCAGCGTTGTTGCCGCCAGCGCCGTTGCCGCCAAT
GCGTGCATGCGCGCGCGCGTCACATGGTGCAGGTGATGAGCTCCCACTTG
CACTCTGGCGGCAGCGCGCGCTTGCGCTGACCCCAGCCCTAGTTGTGCGC
AGTAGGTAGGTACCTCTTCCAGTTGGCCACACGCGCGCGCAGAACGGGGA
GTTCGCTGTCTTGATCCCCGCGCACGCGCGTGCGCGCATCTGTGTTCTTT
GCTGTGCCGGGGGGGAGCCCCTTCACGGGGTCCCCCTCCGCTCAGCGGAG
CGTCACAACCTCACACACACTTCAAGTGTCATTTTGGCGGCGAGTCCGGA
CAGTTCCACATGCCCCCGCATCGCCGGCGGCCACAGGGTTAGGGTTAGGG
TTAGGCCAACCCTAATTTCAGATCTAGCCCTAATCCACAGCACCACACAC
ACACCACCCTAGAGCAGGAGATCCCCAGCAGTTTGTCACTTAGCTTGCGG
AGGAGGGACTGCCCCCCCCCCCCCGTTCTCGAGCGCCGCCTTTACACAAA
AGTACTGATAGCCAAGTGTCCCGTGATGCAAGTGAGCGTGTGAGGCTGGT
TTGTCGGGCATGGAGAGCGTGGTATTTTGCCATAGATGGCTCGCCCTGGG
AGCCCTGTCTGTTATGAATGTCTTGCCACATGAATGGCACATGTTTCGAC
CCCC
back to top

Coding sequence (CDS) from alignment at Contig_89:161797..167800+

>mRNA_12791 ID=mRNA_12791|Name=jgi.p|Trimin1|351388|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2769bp|location=Sequence derived from alignment at Contig_89:161797..167800+ (Tribonema minus UTEX_B_3156 )
ATGAACTCCCCGGAGCCTCGCAGAGCCCAGCAACCGCAACATCAACAACA
GACGGAAGAAACTCTGATTCGAGGCGCCGACGGCAGCAAGCAGCGGCAGG
TGACGATCGATGGCTTCACGTTCAGGGTGCCGGCGAGATATCGGAGGCTG
CGGGCGCTGGGGCGTGGCAGTTTCGGTCTCGTGTGCATGGCGCAGGACTC
GGTCACGGGAGGCTCCGTCGCTATCAAAAAAATATCGCCCATCTCGGCCG
ATGCCGTGGACGCCCGATACGCGCTGAGGGAGATCATGGTGCTGCGGGAG
GCGGGCCTGCACGAGAACATCGTGACAGTGCATGACGTCAGCTACGACTC
CAAAGACGACGCCGTCTACATCATCATGGAACTGCTGGCTAGCGACCTGC
ACAGGGTCAACGCCTCGCCCCAGCCGCTATCCGAGGACCACCTCTGCGTC
TTCATGCTGCAGCTGCTGCGCGGCGTCGCGCACCTCCACGAGAGCGGCGT
GCTGCACCGCGACATCAAGCCCGCGAACCTCCTGGTCTCGCGCGAGTGCG
ACCCCGCCAACCTCCTGGTCTCGCGCGAGTGCGACCTGCGCATCTCCGAC
TTCGGCCTCGCGCGCGCGATAGGCGCGCCCGCGACCGACCCCGCCGCTGC
CGACGCCGACCTGACGGAGCACGTGGTCACGCGCTGGTACCGCCCCCCTG
AGCTGATGCTCAGCAGGAACAGGGCGTACGACGCCGCGGTTGACATGTGG
AGCGTGGGCTGCGTCTTCGCGGAGCTGCTCGGGCGCAAGCCCATGTTTCC
AGGCCGCAACTTCCTGCACCAGTTGAAGTTGATCTTCGAGGTCCTCGGCG
CGCCGGCCGCGCCGGAGACGGTCCACATCAAGGGCGTGCACGCGCGCAAG
TTCCTGCGCAGCGTGCAGGGGCAGGCGCCTAAGCCCTGGAAGGAGGCGTT
TCCGGAGGCGTCGGAGGCGGCGCTGGATCTGCTCTCAGGCCTCCTGGTTT
TCGACCCCGCGAAGCGCCTGACCGCGCGCGCCGCGCTCTCGCACCGCTTC
TTTGAGCCCTACCTACACGTCGCGTTCACGGAGCCGGAGCCGTTCCTCGG
CGTGGACCTGTCCTTCGAGAACCCCGGGACGACCGTCAAGCACATCAAGG
CGCTCATCATGCGCGAGGTGGAGCTGTACAAGCGCGCCTCGGACGCGGCG
GTGGTGGCGGCGGCGGCGGCGGCGGCGGCGGCGATCATGCGCGGCGAGGG
CCTGGAGTTGCCGCCTGAGAAGGCAGCGGCGGCGTTCGGCGGCAGCAGCG
GCAGCGGCGGCGGCGGCGGCGCGCTGTCGCCGTCGTGCGCGCTGCGCGCG
CGCACCAAGTCCACGTGCTCGCGCATCAGCACCGACGCGACGTCCGTGCT
GAGCCGCGAAGACAGCGTCGAGCTCATGCGGCAGCGCCTCGGCGGCAGCG
GCGCGCGCCGCCACCGCACGCTGTACACAGACAGCAGCAGCAGCAGCAGC
GGCAGCAGCGGCGGCGGTGGCGGCGGCGGCGGCGGCGGCGGTGCCGGCCG
CAGCCAGTCCGCGGGCCACGTTCGCAGCGGCAGCAGCAGCAGCAGCAGCA
GCGGCAGCAGCAGCGTTGGCGGCGACAATGGGGGCAGCAGCACCGTAGGC
GACGTTGGCGTCGGTCCCACGGTTAACAGCCCAGTGCCTGTAGCAGTTGC
GGCGGAGGCGCACACCACTTCATTGCCGGATGTCAACACGCGCAGCGTCG
CTACCGCTCCTGTGCCACCTGCCGGCAAAGCCAGCGTGACGCGGTTCGTG
CGCTCGACGTGGCGCCTGCCGCGGCGGCGCCCCGCGGCCGCCGCTGCTGC
TGCTGCTGCGGCGGCGCCTGCGCATGACTCCCAGGAGCCTGCGGCGGCGG
CAACCGCGGCGCCCGCCGCTGCTGCGCAGGTCTCCCGACTGTCCTCCGCC
AACCTGGCGCTGCTGGAGAGCAGTAGGGCTGGCGGCGCTGCGGGCGGCGG
CGCTGATGCCAGCCACAGCCGCGGCGGCGGCGGCGGCAGCGGTGCGCTGG
CGTGGGTGCGCAGTCACGCGTCGCTCAATAGCGCGCGCTCCTCCGCGGGC
GGCAAGCGCGGCGCGGCGGTGGCGGCGGACGCGCTGCCGCCCATCGCGCA
GCCGCTGCGGCGCGCGCTCTCCCGGCAGCGCACGGCGAGCACGCCGCACA
GCCCGGTCTCGCCCATGTCCACGGCTGATGGCGGCGGCGGCGGCGCGCTG
TCGTGGCTGCGCGGCAGCTCGTCGTTCATTCACGAGAGCGGCGGTGCGCG
CCGCCGCGGCCACCGTCGCGCGCGCACCGCCGACTCGCTGCCCGCGTACG
ACAAGCTCGTCCCCGTCGTCCCCGACACGCCGTCGTCCGTCGGCGGCTGC
AGCACCGCGGCCCCCGCGCACGGCAACGTCAAGGCACTGGCAGACACCGC
GGAGGAGCCCTGCGATGGCGGCGGCGGCGGCGGCGGTGCTGCTGCCACTG
GCGGCAGCAGCAGCGGCGGCGGCGGCGGACGTCGCGGGCTCCACTGGCTG
CGGCGACCGCGCGGCTCAGCCACGCGCGCGACGCCGGCGGCGGCGGCGGC
GGCAGCAGCAGCGCCGTTTCACACCACCAGCGGCTTTGTGGCCGGCGGCA
GCAGCGTCGTCAGGCCACGCCGCGGCGGCGGCGACGCTGAGACATGCAGC
CGATCGTCGCGCTTGTCCGGGTCCAGCGGTCTGTCGGCGCTGCTGCGCGT
GCTGCCGCGGCGCGCGTGA
back to top