mRNA_12760 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A835ZEM7_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM7_9STRA) HSP 1 Score: 145 bits (366), Expect = 2.760e-44 Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL
Sbjct: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 71
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: D7G861_ECTSI (ADP-ribosylation factor GTPase-activating protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G861_ECTSI) HSP 1 Score: 99.4 bits (246), Expect = 1.130e-22 Identity = 42/69 (60.87%), Postives = 57/69 (82.61%), Query Frame = 1
Query: 7 CAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
CAGRHRSLG+H++ I+SL +DRW+ + ++LGGN QL +W T+C+ +NSA+E+KYRTKAATLYRE L
Sbjct: 23 CAGRHRSLGTHLTVIKSLAMDRWDAGQVRRMELGGNGQLQAWFTKCQTENSALEMKYRTKAATLYRENL 91
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: F0YNL9_AURAN (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNL9_AURAN) HSP 1 Score: 83.2 bits (204), Expect = 1.440e-19 Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
+ CAGRHRSLG S RSLT+D W E ++ ++ LGGN QL S+ R K++NS +EV YRTK AT YRE+L
Sbjct: 1 IQCAGRHRSLGVKTSFTRSLTMDNWTEANLLAMLLGGNRQLRSFFKRQKIENSEVEVLYRTKQATYYREQL 71
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A8J2SXS4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXS4_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 1.060e-14 Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
+ CAGRHR LG VS RSLT+D W E ++ ++ LGGN QL ++ ++NS IEV YRTK A+ YRE+L
Sbjct: 57 IQCAGRHRGLGVKVSVTRSLTMDNWTEANLLAMLLGGNKQLRTFFETHTIENSDIEVLYRTKQASYYREQL 127
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A1R2AVC5_9CILI (Arf-GAP domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AVC5_9CILI) HSP 1 Score: 74.7 bits (182), Expect = 2.060e-14 Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
++CAG+HR LG HVS +RS+ LD W+ER + ++LGGN L + + ++ + I VKYRTKAA YR+ L
Sbjct: 44 INCAGQHRGLGVHVSFVRSINLDAWQERQLKLMELGGNLALKEFFSSYELNDKEISVKYRTKAAEYYRQML 114
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A1R2CVB2_9CILI (Arf-GAP domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CVB2_9CILI) HSP 1 Score: 73.6 bits (179), Expect = 4.540e-14 Identity = 32/71 (45.07%), Postives = 50/71 (70.42%), Query Frame = 1
Query: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
++CAG+HR LG H+S IRS++LD W+E+ + +KLGGN L + + ++ + I +KY+TKAA YR+ L
Sbjct: 44 INCAGQHRGLGVHISFIRSISLDTWQEKQLNLMKLGGNLALKEFFSTYELNDKEISIKYKTKAAEYYRQML 114
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A7R9U3N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3N9_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.660e-13 Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1
Query: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
L CAGRHRSLG HVS +R+LT+D W + LGGNA L S+LT +++ +E KY T A YRE+L
Sbjct: 32 LQCAGRHRSLGVHVSFVRNLTMDNWTAAQAKRMHLGGNALLRSFLTTHQLETLPLESKYTTPQAKFYRERL 102
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A7R9A6L9_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A6L9_9CRUS) HSP 1 Score: 72.4 bits (176), Expect = 2.960e-13 Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1
Query: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQN--SAIEVKYRTKAATLYREKL 213
L C G+HRSLG H+S +RS+T+D+W+E + +K+GGN Q +L N S I+ KY TKAA+LYR+K+
Sbjct: 43 LDCCGKHRSLGVHLSFVRSITMDKWKEAELKKMKVGGNQQAREFLMSQPDYNHSSPIQQKYNTKAASLYRDKI 115
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: F2U5X1_SALR5 (Arf-GAP domain-containing protein n=2 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U5X1_SALR5) HSP 1 Score: 71.2 bits (173), Expect = 5.030e-13 Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSA-IEVKYRTKAATLYRE 207
L C+G HRSLG H+S +RSL++D+W++ + +K+GGN +L W V SA ++ KY TKAA LYR+
Sbjct: 43 LECSGVHRSLGVHLSFVRSLSMDKWKDEELERMKIGGNKRLQEWFDARDVPRSATMQEKYNTKAAALYRD 112
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A7S2SHV4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SHV4_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 8.290e-13 Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query: 1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSA-IEVKYRTKAATLYREKL 213
L C+G HR LG H+S +RS+T+D W+E+ I ++LGGN +L W + + +SA I+ KY T AA LYR +L
Sbjct: 43 LECSGVHRGLGVHISFVRSITMDAWDEKQIQMMRLGGNQKLIDWFAQHDITSSASIQEKYHTPAAELYRLRL 114 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12760 ID=mRNA_12760|Name=jgi.p|Trimin1|153122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_105:476906..477683- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGCACTGCGCGGGGCGACACCGCAGCCTGGGGAGCCACGTCAGCACCATback to top protein sequence of jgi.p|Trimin1|153122 >Trimin1|153122|gw1.105.86.1 ID=Trimin1|153122|gw1.105.86.1|Name=jgi.p|Trimin1|153122|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVback to top mRNA from alignment at Contig_105:476906..477683- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12760 ID=mRNA_12760|Name=jgi.p|Trimin1|153122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=778bp|location=Sequence derived from alignment at Contig_105:476906..477683- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_105:476906..477683- >mRNA_12760 ID=mRNA_12760|Name=jgi.p|Trimin1|153122|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_105:476906..477683- (Tribonema minus UTEX_B_3156 )back to top |