mRNA_12760 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|153122
Unique NamemRNA_12760
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A835ZEM7_9STRA (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEM7_9STRA)

HSP 1 Score: 145 bits (366), Expect = 2.760e-44
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1
Query:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
            LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL
Sbjct:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 71          
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: D7G861_ECTSI (ADP-ribosylation factor GTPase-activating protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G861_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.130e-22
Identity = 42/69 (60.87%), Postives = 57/69 (82.61%), Query Frame = 1
Query:    7 CAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
            CAGRHRSLG+H++ I+SL +DRW+   +  ++LGGN QL +W T+C+ +NSA+E+KYRTKAATLYRE L
Sbjct:   23 CAGRHRSLGTHLTVIKSLAMDRWDAGQVRRMELGGNGQLQAWFTKCQTENSALEMKYRTKAATLYRENL 91          
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: F0YNL9_AURAN (Arf-GAP domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YNL9_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 1.440e-19
Identity = 40/71 (56.34%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
            + CAGRHRSLG   S  RSLT+D W E ++ ++ LGGN QL S+  R K++NS +EV YRTK AT YRE+L
Sbjct:    1 IQCAGRHRSLGVKTSFTRSLTMDNWTEANLLAMLLGGNRQLRSFFKRQKIENSEVEVLYRTKQATYYREQL 71          
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A8J2SXS4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXS4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.060e-14
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
            + CAGRHR LG  VS  RSLT+D W E ++ ++ LGGN QL ++     ++NS IEV YRTK A+ YRE+L
Sbjct:   57 IQCAGRHRGLGVKVSVTRSLTMDNWTEANLLAMLLGGNKQLRTFFETHTIENSDIEVLYRTKQASYYREQL 127          
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A1R2AVC5_9CILI (Arf-GAP domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2AVC5_9CILI)

HSP 1 Score: 74.7 bits (182), Expect = 2.060e-14
Identity = 34/71 (47.89%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
            ++CAG+HR LG HVS +RS+ LD W+ER +  ++LGGN  L  + +  ++ +  I VKYRTKAA  YR+ L
Sbjct:   44 INCAGQHRGLGVHVSFVRSINLDAWQERQLKLMELGGNLALKEFFSSYELNDKEISVKYRTKAAEYYRQML 114          
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A1R2CVB2_9CILI (Arf-GAP domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CVB2_9CILI)

HSP 1 Score: 73.6 bits (179), Expect = 4.540e-14
Identity = 32/71 (45.07%), Postives = 50/71 (70.42%), Query Frame = 1
Query:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
            ++CAG+HR LG H+S IRS++LD W+E+ +  +KLGGN  L  + +  ++ +  I +KY+TKAA  YR+ L
Sbjct:   44 INCAGQHRGLGVHISFIRSISLDTWQEKQLNLMKLGGNLALKEFFSTYELNDKEISIKYKTKAAEYYRQML 114          
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A7R9U3N9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3N9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 1.660e-13
Identity = 36/71 (50.70%), Postives = 46/71 (64.79%), Query Frame = 1
Query:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSAIEVKYRTKAATLYREKL 213
            L CAGRHRSLG HVS +R+LT+D W       + LGGNA L S+LT  +++   +E KY T  A  YRE+L
Sbjct:   32 LQCAGRHRSLGVHVSFVRNLTMDNWTAAQAKRMHLGGNALLRSFLTTHQLETLPLESKYTTPQAKFYRERL 102          
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A7R9A6L9_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A6L9_9CRUS)

HSP 1 Score: 72.4 bits (176), Expect = 2.960e-13
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQN--SAIEVKYRTKAATLYREKL 213
            L C G+HRSLG H+S +RS+T+D+W+E  +  +K+GGN Q   +L      N  S I+ KY TKAA+LYR+K+
Sbjct:   43 LDCCGKHRSLGVHLSFVRSITMDKWKEAELKKMKVGGNQQAREFLMSQPDYNHSSPIQQKYNTKAASLYRDKI 115          
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: F2U5X1_SALR5 (Arf-GAP domain-containing protein n=2 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U5X1_SALR5)

HSP 1 Score: 71.2 bits (173), Expect = 5.030e-13
Identity = 33/70 (47.14%), Postives = 48/70 (68.57%), Query Frame = 1
Query:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSA-IEVKYRTKAATLYRE 207
            L C+G HRSLG H+S +RSL++D+W++  +  +K+GGN +L  W     V  SA ++ KY TKAA LYR+
Sbjct:   43 LECSGVHRSLGVHLSFVRSLSMDKWKDEELERMKIGGNKRLQEWFDARDVPRSATMQEKYNTKAAALYRD 112          
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Match: A0A7S2SHV4_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SHV4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 8.290e-13
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    1 LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKVQNSA-IEVKYRTKAATLYREKL 213
            L C+G HR LG H+S +RS+T+D W+E+ I  ++LGGN +L  W  +  + +SA I+ KY T AA LYR +L
Sbjct:   43 LECSGVHRGLGVHISFVRSITMDAWDEKQIQMMRLGGNQKLIDWFAQHDITSSASIQEKYHTPAAELYRLRL 114          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|153122 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEM7_9STRA2.760e-44100.00Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
D7G861_ECTSI1.130e-2260.87ADP-ribosylation factor GTPase-activating protein,... [more]
F0YNL9_AURAN1.440e-1956.34Arf-GAP domain-containing protein (Fragment) n=1 T... [more]
A0A8J2SXS4_9STRA1.060e-1452.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1R2AVC5_9CILI2.060e-1447.89Arf-GAP domain-containing protein n=1 Tax=Stentor ... [more]
A0A1R2CVB2_9CILI4.540e-1445.07Arf-GAP domain-containing protein n=1 Tax=Stentor ... [more]
A0A7R9U3N9_9STRA1.660e-1350.70Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A7R9A6L9_9CRUS2.960e-1347.95Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
F2U5X1_SALR55.030e-1347.14Arf-GAP domain-containing protein n=2 Tax=Salpingo... [more]
A0A7S2SHV4_9STRA8.290e-1347.22Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_105contigContig_105:476906..477683 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|153122|gw1.105.86.1
BRITEko00000,ko00001,ko04131
KEGG Pathwayko04144,map04144
KEGG koko:K12492,ko:K12493,ko:K14480
DescriptionGTPase activator activity
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5347@1|root,KOG0706@2759|Eukaryota
Evalue1.85e-23
Seed ortholog2880.D7G861
Hectar predicted targeting categoryother localisation
TranscriptId153444
TrackFilteredModels1
ProteinId153122
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153122gene_12760Tribonema minus UTEX_B_3156 geneContig_105 476906..477683 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|153122Trimin1|153122|gw1.105.86.1Tribonema minus UTEX_B_3156 polypeptideContig_105 476906..477683 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12760_2exon_12760_2Tribonema minus UTEX_B_3156 exonContig_105 476906..477047 -
exon_12760_1exon_12760_1Tribonema minus UTEX_B_3156 exonContig_105 477613..477683 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12760CDS_12760Tribonema minus UTEX_B_3156 CDSContig_105 477613..477683 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12760 ID=mRNA_12760|Name=jgi.p|Trimin1|153122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=213bp|location=Sequence derived from alignment at Contig_105:476906..477683- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCACTGCGCGGGGCGACACCGCAGCCTGGGGAGCCACGTCAGCACCAT
ACGGTCGCTCACGCTTGACAGGTGGGAGGAGCGTCACATCGCGTCCTTGA
AGTTGGGCGGCAACGCTCAGCTTCACAGCTGGCTCACGCGCTGCAAGGTA
CAGAACAGCGCCATCGAGGTCAAGTACCGCACAAAGGCGGCAACTCTGTA
TCGTGAGAAACTC
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protein sequence of jgi.p|Trimin1|153122

>Trimin1|153122|gw1.105.86.1 ID=Trimin1|153122|gw1.105.86.1|Name=jgi.p|Trimin1|153122|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=71bp
LHCAGRHRSLGSHVSTIRSLTLDRWEERHIASLKLGGNAQLHSWLTRCKV
QNSAIEVKYRTKAATLYREKL
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mRNA from alignment at Contig_105:476906..477683-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12760 ID=mRNA_12760|Name=jgi.p|Trimin1|153122|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=778bp|location=Sequence derived from alignment at Contig_105:476906..477683- (Tribonema minus UTEX_B_3156 )
CTGCACTGCGCGGGGCGACACCGCAGCCTGGGGAGCCACGTCAGCACCAT ACGGTCGCTCACGCTTGACAGGTGCGATGTCACAAAGTCAGGTCTGAACG TCGCCCCGACCCTCTGTTAGGGATAGAGTCAGCAGCAGCGCTTCAAAGAC TTTGTAAACAGCGCAGAAGGGAGGCCGCATTTGGCATGCAATAACTTCAT GTACTTGAAGTGTCCAAGTGTTGTTAGTGCTAGACACACTTGCTGCTGAC GCTCGGGTCTCATGGAGTGAAGGCCATGCGCAACATAGTGATCTGATGCC GTGACTGGTTGTCGTTGCCTTGAGTGGAAGGTGTCACCTAAGGTGTGACA ACGCATACAACATGCTGCACATGTACACGGTTTTGGCAGCAGCTGTCCTG ACAAGTAGGTGCTGCACGATGAAGGACTGCTGCGTCCAATGAAACACACA ACCTCTGCGTAGAGAGCCACTGTCGGGCTCTTGCGTCGGTTTGGTGACGC TTGCGCAGCAGCAGCCATGTGGTACACGGCGCAGACTGTAGCATGAATGC CCTCTTCTGTGTCACTTCAACTTGAGCACTTCACAAGCGCTGCATTTCTC AATGTTTAAATCTCATGTTGTGTCTGCGCGCGTCAGGTGGGAGGAGCGTC ACATCGCGTCCTTGAAGTTGGGCGGCAACGCTCAGCTTCACAGCTGGCTC ACGCGCTGCAAGGTACAGAACAGCGCCATCGAGGTCAAGTACCGCACAAA GGCGGCAACTCTGTATCGTGAGAAACTC
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Coding sequence (CDS) from alignment at Contig_105:476906..477683-

>mRNA_12760 ID=mRNA_12760|Name=jgi.p|Trimin1|153122|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=213bp|location=Sequence derived from alignment at Contig_105:476906..477683- (Tribonema minus UTEX_B_3156 )
CTGCACTGCGCGGGGCGACACCGCAGCCTGGGGAGCCACGTCAGCACCAT
ACGGTCGCTCACGCTTGACAGGTGGGAGGAGCGTCACATCGCGTCCTTGA
AGTTGGGCGGCAACGCTCAGCTTCACAGCTGGCTCACGCGCTGCAAGGTA
CAGAACAGCGCCATCGAGGTCAAGTACCGCACAAAGGCGGCAACTCTGTA
TCGTGAGAAACTC
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