mRNA_12759 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173712
Unique NamemRNA_12759
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173712 vs. uniprot
Match: A0A835ZHI9_9STRA (PDZ domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHI9_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.510e-49
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 1 
Query:    1 MRVEEKDLPPPPGTGGSMRSCTVVTRVSEDGQAHGQGVQTGCVMVGVNGEQYLGHAHAVAALKHGRRPVTVRLRRAGV 234
            MRVEEKDLPPPPGTGGSMRSCTVVTRVSEDGQAHGQGVQTGCVMVGVNGEQYLGHAHAVAALKHGRRPVTVRLRRAGV
Sbjct:    1 MRVEEKDLPPPPGTGGSMRSCTVVTRVSEDGQAHGQGVQTGCVMVGVNGEQYLGHAHAVAALKHGRRPVTVRLRRAGV 78
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BLAST of jgi.p|Trimin1|173712 vs. uniprot
Match: A0A7S2XZL0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZL0_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.730e-16
Identity = 41/74 (55.41%), Postives = 55/74 (74.32%), Query Frame = 1 
Query:    1 MRVEEKDLPPPPGTGGSMRSCTVVTRVSEDGQAHGQGVQTGCVMVGVNGEQYLGHAHAVAALKHGRRPVTVRLR 222
            +R+EE+     PG GG+M S  VVT V+E GQA  QGV+ G  ++G+NGEQ+L HAH V+ LKHG+RP++VRLR
Sbjct:   92 LRLEER-----PGGGGAMIS--VVTSVTEAGQADKQGVEVGSTIIGLNGEQFLSHAHTVSTLKHGKRPISVRLR 158
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BLAST of jgi.p|Trimin1|173712 vs. uniprot
Match: W7TXK3_9STRA (Adp-ribosylation factor gtpase-activating (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXK3_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.360e-11
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 MRVEEKDLPPPPGTGGSMRSCTVVTRVSEDGQAHGQGVQTGCVMVGVNGEQYLGHAHAVAALKHGRRPVTVRLR 222
            MR+EE  +P     GG    C V+ +V+  G A  +GV+ GC +VGVNGE+++ HAH VA LKHG+RPV VR R
Sbjct:  361 MRLEE--MPLTSREGGLKYVCQVL-QVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFR 431
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BLAST of jgi.p|Trimin1|173712 vs. uniprot
Match: A0A4D9D4X6_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4X6_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.440e-11
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1 
Query:    1 MRVEEKDLPPPPGTGGSMRSCTVVTRVSEDGQAHGQGVQTGCVMVGVNGEQYLGHAHAVAALKHGRRPVTVRLR 222
            MR+EE  +P     GG    C V+ +V+  G A  +GV+ GC +VGVNGE+++ HAH VA LKHG+RPV VR R
Sbjct:  937 MRLEE--MPLTSREGGLKYVCQVL-QVTSGGAAESKGVRDGCCVVGVNGERFISHAHTVATLKHGKRPVLVRFR 1007
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BLAST of jgi.p|Trimin1|173712 vs. uniprot
Match: A0A8J2SXS4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXS4_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.590e-11
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   46 GSMRSCTVVTRVSEDGQAHGQGVQTGCVMVGVNGEQYLGHAHAVAALKHGRRPVTVRLR 222
            G + + ++VT V   GQA   GV+ G V++GVNGE+YL HAH  A LKHGRRPV +RLR
Sbjct:  484 GGLVAVSLVTSVDAAGQAAAAGVRAGDVVLGVNGERYLSHAHTAATLKHGRRPVELRLR 542
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173712 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835ZHI9_9STRA1.510e-49100.00PDZ domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2XZL0_9STRA1.730e-1655.41Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TXK3_9STRA1.360e-1150.00Adp-ribosylation factor gtpase-activating (Fragmen... [more]
A0A4D9D4X6_9STRA1.440e-1150.00Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A8J2SXS4_9STRA3.590e-1155.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_105contigContig_105:471600..471836 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173712|e_gw1.105.95.1
BRITEko00000,ko00001,ko04131
KEGG Pathwayko04144,map04144
KEGG koko:K12492,ko:K12493,ko:K14480
DescriptionGTPase activator activity
COG categoryU
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5347@1|root,KOG0706@2759|Eukaryota
Evalue4.62e-15
Seed ortholog2880.D7G861
Hectar predicted targeting categoryother localisation
TranscriptId174034
TrackFilteredModels1
ProteinId173712
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173712gene_12759Tribonema minus UTEX_B_3156 geneContig_105 471600..471836 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12759_1exon_12759_1Tribonema minus UTEX_B_3156 exonContig_105 471600..471836 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12759CDS_12759Tribonema minus UTEX_B_3156 CDSContig_105 471600..471836 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173712Trimin1|173712|e_gw1.105.95.1Tribonema minus UTEX_B_3156 polypeptideContig_105 471600..471836 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12759 ID=mRNA_12759|Name=jgi.p|Trimin1|173712|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_105:471600..471836- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGTGGAGGAAAAGGACCTCCCCCCGCCCCCCGGCACTGGCGGCAG
CATGCGCAGCTGCACCGTGGTTACACGCGTCAGTGAGGACGGTCAGGCGC
ACGGTCAGGGCGTACAGACGGGGTGCGTGATGGTGGGCGTGAACGGCGAG
CAGTACCTGGGGCACGCGCACGCGGTGGCAGCGCTCAAACACGGGCGCAG
GCCGGTGACGGTGCGGCTGCGGCGCGCCGGGGTATGA
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protein sequence of jgi.p|Trimin1|173712

>Trimin1|173712|e_gw1.105.95.1 ID=Trimin1|173712|e_gw1.105.95.1|Name=jgi.p|Trimin1|173712|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=79bp
MRVEEKDLPPPPGTGGSMRSCTVVTRVSEDGQAHGQGVQTGCVMVGVNGE
QYLGHAHAVAALKHGRRPVTVRLRRAGV*
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mRNA from alignment at Contig_105:471600..471836-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12759 ID=mRNA_12759|Name=jgi.p|Trimin1|173712|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=237bp|location=Sequence derived from alignment at Contig_105:471600..471836- (Tribonema minus UTEX_B_3156 )
ATGCGCGTGGAGGAAAAGGACCTCCCCCCGCCCCCCGGCACTGGCGGCAG
CATGCGCAGCTGCACCGTGGTTACACGCGTCAGTGAGGACGGTCAGGCGC
ACGGTCAGGGCGTACAGACGGGGTGCGTGATGGTGGGCGTGAACGGCGAG
CAGTACCTGGGGCACGCGCACGCGGTGGCAGCGCTCAAACACGGGCGCAG
GCCGGTGACGGTGCGGCTGCGGCGCGCCGGGGTATGA
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Coding sequence (CDS) from alignment at Contig_105:471600..471836-

>mRNA_12759 ID=mRNA_12759|Name=jgi.p|Trimin1|173712|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=237bp|location=Sequence derived from alignment at Contig_105:471600..471836- (Tribonema minus UTEX_B_3156 )
ATGCGCGTGGAGGAAAAGGACCTCCCCCCGCCCCCCGGCACTGGCGGCAG
CATGCGCAGCTGCACCGTGGTTACACGCGTCAGTGAGGACGGTCAGGCGC
ACGGTCAGGGCGTACAGACGGGGTGCGTGATGGTGGGCGTGAACGGCGAG
CAGTACCTGGGGCACGCGCACGCGGTGGCAGCGCTCAAACACGGGCGCAG
GCCGGTGACGGTGCGGCTGCGGCGCGCCGGGGTATGA
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