mRNA_12716 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173680
Unique NamemRNA_12716
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: A0A835ZJZ3_9STRA (NAD(P)H dehydrogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJZ3_9STRA)

HSP 1 Score: 527 bits (1358), Expect = 1.080e-189
Identity = 251/251 (100.00%), Postives = 251/251 (100.00%), Query Frame = 1 
Query:    1 MLFGLQQAVINAAFRPLRSLPGPFSLALNKCSCHFPPARNADGGEQRVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFSWF 753
            MLFGLQQAVINAAFRPLRSLPGPFSLALNKCSCHFPPARNADGGEQRVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFSWF
Sbjct:    1 MLFGLQQAVINAAFRPLRSLPGPFSLALNKCSCHFPPARNADGGEQRVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFSWF 251
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BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: D7FXF8_ECTSI (NAD(P)H dehydrogenase (Quinone) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXF8_ECTSI)

HSP 1 Score: 251 bits (640), Expect = 1.940e-80
Identity = 119/238 (50.00%), Postives = 166/238 (69.75%), Query Frame = 1 
Query:   43 RPLRSLPGPFSLALNKCSCHFPPARNA-DGGEQRVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFSWF 753
            +PL SL      ALN+ +   PP  +  DG +++++++  HP  +  S++ AL +AV  +LKD GH VRV +LY E F+AAL  +E R +MTA+R+G +A  V  HV+ L+W  GLV  YPTWWY+ PAILKGW DR L PG  FD+P+G    +P TG ISRLTNI+++G+V+T+GN + +V+YVGDPGRR++SRGLR + HP+C++LW GL+ VE C  + RSAFLE V + F  F
Sbjct:   12 QPLSSLLAGAMRALNRVTSFVPPPPSGKDGVQEKIVVVQVHPNGKDPSFTLALGEAVRDSLKDAGHQVRVTNLYQEQFQAALGGQEHRGFMTAFRDGQVAEDVKGHVDDLQWCSGLVLCYPTWWYSFPAILKGWLDRTLMPGVAFDLPNGVEKPHPKTGFISRLTNIRKVGMVTTFGNSFWNVRYVGDPGRRIVSRGLRPLFHPECTLLWKGLYDVEKCPPQDRSAFLEDVGRSFRDF 249
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BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: A0A1I3JXQ4_9RHOB (Putative NADPH-quinone reductase (Modulator of drug activity B) n=1 Tax=Albimonas pacifica TaxID=1114924 RepID=A0A1I3JXQ4_9RHOB)

HSP 1 Score: 192 bits (487), Expect = 5.140e-58
Identity = 95/203 (46.80%), Postives = 130/203 (64.04%), Query Frame = 1 
Query:  139 RVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFS 747
            R+L++Y HPV EGS +  A+RDAV+ + ++ GH++R+ DLYAEGF+  +  EE   Y   +   A    VA H+ ++RWA+GL+FV+PTWWY PPA+LKGW DR   P   F MP  TT   P       LT+I+ IG VST G+ W   +++G PGRR+I RGLRA C P C   WLGLH ++T  + +R AFL  VR+  +
Sbjct:    2 RLLIVYCHPV-EGS-FGSAVRDAVIDSAREAGHEIRLTDLYAEGFDPVMRREERIGY---HEPAANEVPVAEHLANVRWAEGLIFVHPTWWYGPPAMLKGWLDRVFVPHVAFQMPTETTGIRPG------LTHIRLIGQVSTLGSSWWLWRFMGQPGRRIILRGLRACCAPACRTFWLGLHAMDTVPEPKRRAFLARVRRRIA 193
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BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: A0A6N6VDW8_9HYPH (Flavodoxin family protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VDW8_9HYPH)

HSP 1 Score: 187 bits (475), Expect = 3.240e-56
Identity = 91/203 (44.83%), Postives = 127/203 (62.56%), Query Frame = 1 
Query:  139 RVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFS 747
            +VL++Y+HPV E  S+  ALRD VV ALK +GHDVR+ DLYAE F+  L  +E R Y T   EG     V  H+ +++WA+ L+FV+PTWWY  PA+LKGW DR   PG +F MP G  P  P       LTN+K +G ++T G+ W  ++ VG+P RR + RG+R  CHP C  LW+  + +++   E R ++L  VR+  S
Sbjct:    2 KVLVVYSHPVPE--SFCAALRDTVVDALKAKGHDVRLTDLYAENFDPRLGCQERRDYHT---EGKNLTYVPEHIANIQWAEALIFVFPTWWYGLPAMLKGWLDRVFVPGVSFTMPKGQMPIMP------ALTNVKLVGGITTCGSPWWWMKIVGEPHRRTLLRGIRGSCHPRCKTLWMAHYRMDSSTPESRKSYLALVRERLS 193
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BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: W7TIP7_9STRA (Nad h dehydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIP7_9STRA)

HSP 1 Score: 186 bits (473), Expect = 3.740e-55
Identity = 92/214 (42.99%), Postives = 134/214 (62.62%), Query Frame = 1 
Query:  106 PPARNADGGEQRVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAY--REGALAPAVAA---HVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHV 732
            PP R+     +RVLLL+AHP+   SS++ A  +    +L++ GH+V+   LY EGF+  + A ++R YM     R     P  AA   +++ L+W   L+FVYPTWWY  PAILKGW DR   P + F +P  T+P     G++  L NIK++GVV+TYG+ +Q ++YVGDPGRR+I+RGLR +    C++LWLG++  +T +Q  R  FL  V
Sbjct:   33 PPPRHPSDPPRRVLLLHAHPMGT-SSFNGACFETTHRSLQEAGHEVQTLSLYEEGFQPCMQASDIREYMKPLSDRHDEGTPDKAALLRYIDLLKWCDALIFVYPTWWYAMPAILKGWIDRTFLPHSAFTLPTPTSPPASVVGLVPCLKNIKKVGVVTTYGSSYQVIRYVGDPGRRIIARGLRPLFDAQCTLLWLGMYSCDTASQAEREDFLAEV 245
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BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: A0A4R6RD44_9HYPH (Putative NADPH-quinone reductase n=1 Tax=Oharaeibacter diazotrophicus TaxID=1920512 RepID=A0A4R6RD44_9HYPH)

HSP 1 Score: 183 bits (465), Expect = 1.120e-54
Identity = 96/203 (47.29%), Postives = 128/203 (63.05%), Query Frame = 1 
Query:  139 RVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFS 747
            R+L++Y HPV E  S+  AL +AV + L + GH+VR  DLY EGF A LS  E R Y      G    A+A HV+++RWA+GLVFVYPTWWY  PA+LKGW DR L P   F MP  T       G+   L NI+RI VV+T G  W   + +G+PGR+ I RGLR+ICHP C   +  L+ ++T + E+R+A+L  VR+E +
Sbjct:    2 RLLVVYCHPVPE--SFVAALCEAVRAGLAEAGHEVRFVDLYGEGFSAPLSTAERRAYG---ERGVNEVALADHVDNVRWAEGLVFVYPTWWYGLPAMLKGWMDRVLLPHVAFTMPTETQ------GIRGNLRNIRRIEVVTTCGATWSLSKVMGEPGRKTILRGLRSICHPFCRTRYRALYRMDTVSAEKRAAYLARVRREMA 193
[Close]
BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: A0A2S0N9C1_9HYPH (NAD(P)H dehydrogenase n=1 Tax=Phreatobacter cathodiphilus TaxID=1868589 RepID=A0A2S0N9C1_9HYPH)

HSP 1 Score: 182 bits (463), Expect = 2.240e-54
Identity = 95/205 (46.34%), Postives = 129/205 (62.93%), Query Frame = 1 
Query:  139 RVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISR-LTNIKRIGVVSTYGNQWQHVQYV-GDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFS 747
            R+L++Y HP  E  S++ A+RD  ++AL   GH++R+ DLY EGF+  +  EE R Y   +  GA    VAAH+++LRWA+GL+FVYPTWWY  PA+LKGW DR   P ATF MP+   P       I R LTNI+ IG VST G+ W   + V  +PGRR + RGLR + +P C  LWL LHG++     +R+ FLE V +  +
Sbjct:    2 RMLVIYCHPCPE--SFTAAIRDRALAALAAAGHEIRLIDLYGEGFDPVMGGEERRRY---HERGANETPVAAHLDALRWAEGLLFVYPTWWYGLPAMLKGWLDRVWIPHATFTMPEAGKP-------IGRVLTNIRFIGAVSTLGSPWWWWRLVMSEPGRRTLLRGLRPLVNPRCRTLWLALHGIDGATPAQRTDFLEKVERRLA 194
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BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: A0A7W9CVX2_9HYPH (Putative NADPH-quinone reductase n=1 Tax=Prosthecomicrobium pneumaticum TaxID=81895 RepID=A0A7W9CVX2_9HYPH)

HSP 1 Score: 182 bits (462), Expect = 2.980e-54
Identity = 91/198 (45.96%), Postives = 130/198 (65.66%), Query Frame = 1 
Query:  139 RVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHV 732
            R L++YAHPV E  S++ A+RD VV +L   GH+VR+ DLYA GF+  +SAEE R Y    R+  + P VA HV  ++WA+ +VFVYPTWWY PPA+LKGW +R   P  TF MP  TT   PN      + +++R+ VV+T G  W   ++VG+PGR++I RG+R +CHP CS  +L  + ++T  ++ R+A+L  V
Sbjct:    2 RTLVVYAHPVPE--SFNAAVRDTVVESLSGAGHEVRLLDLYASGFDPVMSAEERRLYHE--RDVNVRP-VAEHVALIQWAEAMVFVYPTWWYGPPAMLKGWLERVWVPHVTFIMPTETTGIRPN------MQHVRRLAVVTTCGASWLMSKFVGEPGRKIILRGIRLLCHPRCSTRYLAHYKMDTSTKKSRAAYLAKV 188
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BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: A0A4D7B2I5_9HYPH (Flavodoxin family protein n=1 Tax=Phreatobacter stygius TaxID=1940610 RepID=A0A4D7B2I5_9HYPH)

HSP 1 Score: 181 bits (459), Expect = 9.010e-54
Identity = 97/200 (48.50%), Postives = 128/200 (64.00%), Query Frame = 1 
Query:  139 RVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISR-LTNIKRIGVVSTYGNQWQHVQYV-GDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHV 732
            R L++Y HP  E  S++ ALRD VV+AL+  GH++RV DL+AEGF+  +SAEE R Y T    G     VA H+++LRW +GL+FVYPTWWY  PA+LKGW DR   P ATF MP+G  P       I R +TNI+ IG VST G+ W   + V  +PGRR + RGLR + HP    LWL LH +++ +Q+ R  +L  V
Sbjct:    2 RFLIVYCHPCPE--SFTAALRDTVVAALRRGGHELRVLDLHAEGFDPVMSAEERRGYHT---PGVNEAPVAEHLQALRWCEGLLFVYPTWWYGLPAMLKGWLDRVWVPYATFGMPEGRKP-------IGRVMTNIRFIGAVSTLGSPWWWWRLVMSEPGRRTLLRGLRPLVHPRAKTLWLALHRMDSASQDDRERYLAKV 189
[Close]
BLAST of jgi.p|Trimin1|173680 vs. uniprot
Match: A0A0K2DA06_9HYPH (NAD(P)H dehydrogenase n=4 Tax=Chelatococcus TaxID=28209 RepID=A0A0K2DA06_9HYPH)

HSP 1 Score: 180 bits (457), Expect = 1.700e-53
Identity = 93/198 (46.97%), Postives = 124/198 (62.63%), Query Frame = 1 
Query:  139 RVLLLYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEELRTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDRCLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVGDPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHV 732
            R+LL+Y HP  E  S++ A+RD  ++ L  RGHDVR+ DLYAEGF+  +SA+E R Y T    GA    VA H+  LRWA+GLVFV+PTWWY PPA+LKGW DR   P ATF MP+    T      +  + +I+ + VVST G+      ++G PGRR++  G+ A+C   C  LWLGLHG++T   + R  FL  V
Sbjct:    2 RILLVYCHPCAE--SFTAAVRDTALATLSGRGHDVRLLDLYAEGFDPVMSADERRGYHT---PGANEEPVAGHLALLRWAEGLVFVHPTWWYGPPAMLKGWLDRVFVPHATFRMPERGKTT------LGAMGHIRFLAVVSTLGSPRWWXXFMGMPGRRMLLTGIGALCGLRCKRLWLGLHGMDTVTADERRRFLARV 188
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173680 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJZ3_9STRA1.080e-189100.00NAD(P)H dehydrogenase n=1 Tax=Tribonema minus TaxI... [more]
D7FXF8_ECTSI1.940e-8050.00NAD(P)H dehydrogenase (Quinone) n=1 Tax=Ectocarpus... [more]
A0A1I3JXQ4_9RHOB5.140e-5846.80Putative NADPH-quinone reductase (Modulator of dru... [more]
A0A6N6VDW8_9HYPH3.240e-5644.83Flavodoxin family protein n=1 Tax=Parvibaculum sed... [more]
W7TIP7_9STRA3.740e-5542.99Nad h dehydrogenase n=1 Tax=Nannochloropsis gadita... [more]
A0A4R6RD44_9HYPH1.120e-5447.29Putative NADPH-quinone reductase n=1 Tax=Oharaeiba... [more]
A0A2S0N9C1_9HYPH2.240e-5446.34NAD(P)H dehydrogenase n=1 Tax=Phreatobacter cathod... [more]
A0A7W9CVX2_9HYPH2.980e-5445.96Putative NADPH-quinone reductase n=1 Tax=Prostheco... [more]
A0A4D7B2I5_9HYPH9.010e-5448.50Flavodoxin family protein n=1 Tax=Phreatobacter st... [more]
A0A0K2DA06_9HYPH1.700e-5346.97NAD(P)H dehydrogenase n=4 Tax=Chelatococcus TaxID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_105contigContig_105:98427..103930 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173680|e_gw1.105.90.1
DescriptionFlavodoxin-like fold
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2249@1|root,2S51M@2759|Eukaryota
Evalue3.18e-81
Seed ortholog2880.D7FXF8
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionFlavodoxin-like fold
Ec32 orthologEc-07_003040.1
TranscriptId174002
TrackFilteredModels1
ProteinId173680
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173680gene_12716Tribonema minus UTEX_B_3156 geneContig_105 98427..103930 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173680Trimin1|173680|e_gw1.105.90.1Tribonema minus UTEX_B_3156 polypeptideContig_105 98427..103930 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12716_4exon_12716_4Tribonema minus UTEX_B_3156 exonContig_105 98427..98604 -
exon_12716_3exon_12716_3Tribonema minus UTEX_B_3156 exonContig_105 100530..100672 -
exon_12716_2exon_12716_2Tribonema minus UTEX_B_3156 exonContig_105 101741..101943 -
exon_12716_1exon_12716_1Tribonema minus UTEX_B_3156 exonContig_105 103699..103930 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12716CDS_12716Tribonema minus UTEX_B_3156 CDSContig_105 103699..103930 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12716 ID=mRNA_12716|Name=jgi.p|Trimin1|173680|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=756bp|location=Sequence derived from alignment at Contig_105:98427..103930- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGTTCGGCTTGCAGCAAGCCGTTATAAACGCAGCATTCAGGCCTCT
GCGCTCGCTGCCTGGTCCCTTCAGCTTGGCTCTCAACAAGTGCTCTTGTC
ACTTCCCTCCAGCTCGCAATGCGGATGGGGGCGAGCAGCGCGTGCTTCTA
TTGTACGCCCACCCCGTGCACGAAGGCAGCAGCTACAGCTGTGCGCTGAG
AGATGCTGTCGTGTCAGCTTTGAAGGATCGCGGGCACGACGTGAGGGTCG
CAGACCTGTATGCGGAGGGCTTTGAAGCAGCGCTCAGCGCCGAGGAGCTG
CGCACGTACATGACGGCGTATAGGGAGGGCGCGCTCGCGCCCGCCGTCGC
CGCGCACGTGGAGAGCCTGCGCTGGGCTCAGGGCCTCGTGTTCGTGTACC
CAACGTGGTGGTACACGCCGCCGGCGATACTGAAGGGCTGGTTCGATCGC
TGCCTGTGCCCCGGTGCCACCTTTGACATGCCCGATGGGACAACGCCCAC
TAACCCTAATACCGGGGTCATCAGCCGCCTGACCAACATCAAACGCATAG
GCGTGGTTTCTACGTACGGCAACCAATGGCAGCACGTGCAGTACGTGGGA
GACCCCGGGCGGCGCCTCATCAGCAGGGGACTGCGCGCCATCTGCCACCC
CGACTGCTCCGTGCTGTGGCTGGGGCTGCACGGCGTGGAGACGTGTGCGC
AGGAGCGGCGCAGCGCGTTCCTGGAGCACGTGCGCCAGGAATTTTCCTGG
TTCTGA
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protein sequence of jgi.p|Trimin1|173680

>Trimin1|173680|e_gw1.105.90.1 ID=Trimin1|173680|e_gw1.105.90.1|Name=jgi.p|Trimin1|173680|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=252bp
MLFGLQQAVINAAFRPLRSLPGPFSLALNKCSCHFPPARNADGGEQRVLL
LYAHPVHEGSSYSCALRDAVVSALKDRGHDVRVADLYAEGFEAALSAEEL
RTYMTAYREGALAPAVAAHVESLRWAQGLVFVYPTWWYTPPAILKGWFDR
CLCPGATFDMPDGTTPTNPNTGVISRLTNIKRIGVVSTYGNQWQHVQYVG
DPGRRLISRGLRAICHPDCSVLWLGLHGVETCAQERRSAFLEHVRQEFSW
F*
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mRNA from alignment at Contig_105:98427..103930-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12716 ID=mRNA_12716|Name=jgi.p|Trimin1|173680|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5504bp|location=Sequence derived from alignment at Contig_105:98427..103930- (Tribonema minus UTEX_B_3156 )
ATGCTGTTCGGCTTGCAGCAAGCCGTTATAAACGCAGCATTCAGGCCTCT
GCGCTCGCTGCCTGGTCCCTTCAGCTTGGCTCTCAACAAGTGCTCTTGTC
ACTTCCCTCCAGCTCGCAATGCGGATGGGGGCGAGCAGCGCGTGCTTCTA
TTGTACGCCCACCCCGTGCACGAAGGCAGCAGCTACAGCTGTGCGCTGAG
AGATGCTGTCGTGTCAGCTTTGAAGGATCGCGGTGAGCCTACGCCAACGA
CATGTTCTCTGAAGCACCAAATTCAGATTGTACTTCAAGTATGCTGGAAA
AGCGGATGTCAGGGTCCGAGCTCCTACAGAAAACAGCTGCAGCTACGCCA
CAGAAAAGCAAATTTATGTACCTACCTTGCTGCATTGGTTCACTTGAAGT
GCGACATCTTTCTGTGAGCCAGTTTAGTCTTTCAAGCGATCATCTTCGCA
TGTGGCACAAGGCACTGCACCTGCTTTGTGGCCCACAGTCAACGCTCCAA
CAACAAAATGCTGACTGATCTGCGAGCAGAGGTCCTTGTTGCATCAATCA
GGCATTCAAGGTCCTCTCAGTAGCGAAGCGGCGAGGCTCAGAATCTTGTC
AACGTCAACTCGTCAGCTGAGAGCCTCTAGGGCTAACCCTGAACCTAGCC
TCTATAGCCATGCCTGGCGTGTGTCATGCTGCCATCACCTCCCCGCCAGC
AGGGCACTGCCTCAATGTCCCCAACCTGTATTAGCGCAGCAACTAAAATC
AGTGACAGTACCCATATCATGAGACAACATGAAAAGAAACTGAACTAATG
CCCCTCAAAAACTGAGCGCTTGATGCATTTGTGTTCATGCGTCCTCACAC
CTTGTGCTCTCCGCTGGCTGCATTTGTTCAATCACCTCTTTGCTGAGTGC
CACGCGCATGCGGCACTACCCAAATCGCCCCATCTGCCGTGGCAGGGCAT
GACGCGAGGGTGGCCGACCGAAACCTGTAGGGGTTTCTATGCCAATCAAG
CCAAGCATTCATTCATTGCGCTCTATCCGCTGTCGCAGAGCTTAAGCCCA
TAAGGATTGATGTAGCCATGAAATTTTCACTTGTCCGCACAATCAAGTGC
GGGTGACGAAAGGGGAGGGGGCTTTATGGCAGTGCTCAGCCAAAGAGGAG
CTGCCCTAATCCTCCCTGCAATTGGTGATGCCGGCTCGGGGAACTGTAAG
ATCTCATGTATTAACTGCAAGTGGCCACATCAAAATGAACTTTCACCTGC
CGCGCTGCCCCGCCGGCAGCGCACGATGTGAGGGTCAGGGACCTGTACTT
GGAGGGCTTTGAGACAGCGCTCAGCGCGGAGGGAGCTGCCCACTAAGCCG
GCCTGCAATCGGTCATGCCGGCCCGGGGAACCACATGGTTTCATGTAGCA
ACTGGAAATGGCTACTTGACATTTAATATTCGCCCGCCACGCTGCCCGCC
CGCAGAGCACGACGTGAGGGTCGCGAACCTTTACAGAAGTGGGCTCTGAG
GCAGCGCTCAGCGCTGAGCGAGCCGCCCGCTAAGCCTACCTGCAATTGTT
CATGCCGGCCTGGCTCACCGCAAGGCTTCATGTAGCAACTACAAGTGGCT
ACTTCATATTTGAACTTCTACCCGCGGCGCTGCGCGTTGGCAGGGCACGA
CGTGAGGGTCGCCAACCTGTATTTGGAGGGTTTCGAATCAGCGCTCAGCA
CGAAGGAGCTGCGCCAACAAAACAACCAGAACAATCACCTAGGATTAAAC
TACCCTCACTACTGGCAAACAAGCACCAAACATTGAACTTTTGCTCACCG
CGCTGTATGCCCACAGGGCACGCGAGGGTCGCAGACCTGTACGCGGAGGG
CTTTGAAGCAGCACTCAACGCGGACGAGCTGCGCCAACAAAACAATCAAA
ACCACTCACATTCGATTAGATTACCCTCACTAGTGGCCAACAAGCACCAA
ATATCTAACATTCGCCCACCGCGCTGCCCGTCGGCAGGGCACGACGTGAG
GGTCGCAGACCTGTATGCGGAGGGCTTTGAAGCAGCGCTCAGCGCCGAGG
AGCTGCGCACGTACATGACGGCGTATAGGGAGGGCGCGCTCGCGCCCGCC
GTCGCCGCGCACGTGGAGAGCCTGCGCTGGGCTCAGGGCCTCGTGTTCGT
GTACCCAACGTGGTGGTACACGCCGCCGGCGATACTGAAGGTGATTGTTG
TTTAATGAACACGAATCAACAGATCGTAGAGCTGTAGGTGACAAGGGATG
GTTAGCCGCAAGTGCCTTCCACCAATGACCGTGGTCGCCGCTGCTGCACT
TAAGGACAGCATCACTGCTTTCCTCGCATCACGCTACTTTTAAGGTGCGC
GCGGCGCACGTGGAGAGCCTGCGCTGAGTGCAGCAGGGCGTTGTGTTTGT
GTACTCAACGTGGTGGTACACGCCGCCGGCGATACTGAAGGTGGCCACTG
GGTGGTGATAGCATCACTGCTTTCCTCGCATCACGCTACCCTTGTGGTGC
GCGCAGCGCCTGTGAAGGGCCTGCGCTCAGCGCAGGGCCTCGCCGTTGTG
TATTCCCGACGCGGTGGTACACGCCGTCGGCGGTACTGAAGGTGATCGTT
GATTAATGGTAGCATCATATCGACGTGGTGGTACACGCCCCCGGCGATAC
TCAAAATGGTAGTCGAGGGTAGCTGAGAGGAGGCATTCCCTTGCTTTCTA
TGACCTAGCGTACCAGCTAGTACTCTGCTGCCGGCAATGTTCAAGGTGCG
CCGGGCAAGGCTTCTCGCGAGAGGACTCGTACTAACAGAGCCCAGTGGCC
GGTGCGTACTGGTGCATGGTACTCAAGGCGAAAATCCGTTGCGCGGGGGT
TAGGATTAGGGTTACAGTTAGGGTTGGAATTAGGGTTAGGCTAACCCTAA
TCCGGATGGTGACTCGTTGAGCACTGCTATATTGGTTTACACAAGGGGCA
CGCGCCTCGCAAGAGAACTCCTTCTTAAGCCTGCCGAGCACTGCTTTCCT
GGCGAATGGTGCTGAGTGTTGCGCAGCGCAATTGCAGCGGGCGCACACAG
CTGACCCCGCACGCTGCTCGGCCATGTTTCCCATGGTGTCATTGTGCCAT
GTCATATATTGAAGCCGTGAAAACGCGTTTGCAGTAGGTGATGTGAAATG
CATACTTAAGAGCTGCCATGCCGTATACTGTGCACATGGTGTTGTCATCC
TTGAAGTGCACACTCTAACACCTGCTCGGGTGGTGCGTTGCGCTTTGCTG
GCATGCAGGGCTGGTTCGATCGCTGCCTGTGCCCCGGTGCCACCTTTGAC
ATGCCCGATGGGACAACGCCCACTAACCCTAATACCGGGGTCATCAGCCG
CCTGACCAACATCAAACGCATAGGCGTGGTTTCTACGTACGGCAACCAAT
GGTGAGAGGTTAGGGTTAGGGTTGAGATGAGATAGAATTCGGACAGAATG
TGTGCTCTCAGGGGCTAGGGTCAGGGATAGTGTGGAAGGCCAGGCTTACC
GTTGACTTCAGAAGGTTTGGATGAAGGTTGGGGCGAGCGCTGTGACAGTT
ACGCTTCGCCTCCGCCTTGATGAGTGTGCAACCAGTGGCACACCGCAGTC
CTGTTGCTCAGAAGAGGACAGACAGTGCTCAACAACTGATCACGCGCAGA
AATTTCTGCGCTGTCAGGTGCTGGTCATCCTTTGGTCCCTCGCTTCATGA
CCTGCATCATAGGAGGTGCTGCATGCACGCATTCGACAATGTCGGTACGC
TTCAGAAGGTCCACTGCCTTGCATGCAAGCATACAAGACTCCGCATGGTT
GCCACTTAGGGTTAGGGTCAAGGTTAGGTCAGAAGGGCAGCGCGTGTACC
GTTGACGCCCCGCACGCGGCTGCCTTGTGTCAGGCGTGAATGCAGAGCAT
TACTGCCATTTCACACGCCCAAGGAGTGCCGCCCTAGGAATGCTTGCGCT
GGCACCACCATAACCCCTGCCCTCCCCTCCCCCCCCCCCCCCCCCCCTCC
CCCCTCACTCGGACAACACGAAAGTAGGCAGCACGTGCAGTATGTCGGTG
CAGGGACCATGACCCCCCTTGTCCCTGCCCATTCTCCACCCCCTGAACCG
CCCTCTCCAATGCATTTCAAATAGGCAGCACGCCCCCCGTTCCCAACCCC
CTGTGACCCCTCTCTCTATTGCATTCTAAACAGGCAGCATGCCCCCCGTT
TCCAACCCTCTTCCCCCTCTACATTCCAAATAAGCAGCAGCCCCCCCCCG
TTCCCAATCCCTGAACCCCTCTCTAATGCATTTCAAAAACACAGCACCCC
CCCCGTTCCCAATCCCTGAACCCTTCTCTCTAATGCATTCTAAATAGGCA
GTCTACATTCGAAATAAGCAGCACCCCCCCCCGTTCCCATTGGCAACCGC
TGAACCCCTCTCTAATGCATTTCAAGTAAGCAGCACCCCCCCCCTGTTCC
CAACCCCTGAACCCTTCTCTCTAATGCATTCTAAATAGGCAGCACGCCCC
CCGTTAGCAACCCTCTACCCCCTCTACATCCTAAATAGGCAACCATGCCC
CCCGTTTCCAACCCCCCTGAACCCCTCTCTCTGATGCGTTCTCGGCAACA
TGGCCCCCGTTCTCAACTCTCTGGACCCCTCTCGTTAACGAATTCAAAAC
AGGCAGCACGCCCCCCGTTCTCAACCCCCACACCCCTCTCTCTAAAGCAG
CCCCCATTCTCAACCCCCTGGACCCCTCCCTCCAATGCACACCAAACAGG
CAGCACGCGCAGCACGTGGCAGACCCCGGGCAGGCACCACGACCCCCCTT
CTCTCCCCCCCCGTTTTTCACCCCCTGAACTCCTCTCTCTAATGCATCCC
AAACAGGCAGCACGCCCCCCGTTCTCAACCCCCCCAACCTCTCTCGCTAA
TGCATTCTAATTGGGCAGCACGCCCCCCATGCTCAACCCCCTGAAACCCT
CTCCCTAAAGCACGCCCCCGTTCCCGACCCTGAACCCCTCTCTCTAAATG
CATTCAAGATGGGCAACCATGCCCCCCCGCTCCCAACCCCCTTAACCTCT
CTCAAATCCATTCTAAACAGGCAGCACGCCCCCCCCACCCCCCTGAACCC
CTCTCTCCAAAGCACGCCCCTGTTCTCAACCCCCTGAACCCCCCCTTCTA
ATGCACACCAAACAGGCAGCATGTGCAGTACGTGGGTGATCCCGGGCAGG
CACCATGACCCCCCTTGTCTCCCCTCCGGTTTCAACCCCTTGAACCTCTC
TCTAATGCATCCTAAACAGGCAGCACGCCCCCCATTCTCAACCCCCCCAA
CCCCTCTCGCTAATGCATCTAATCAGGCAGCACGTGCAGTACGTGGGAGA
CCCCGGGCGGCGCCTCATCAGCAGGGGACTGCGCGCCATCTGCCACCCCG
ACTGCTCCGTGCTGTGGCTGGGGCTGCACGGCGTGGAGACGTGTGCGCAG
GAGCGGCGCAGCGCGTTCCTGGAGCACGTGCGCCAGGAATTTTCCTGGTT
CTGA
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Coding sequence (CDS) from alignment at Contig_105:98427..103930-

>mRNA_12716 ID=mRNA_12716|Name=jgi.p|Trimin1|173680|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=756bp|location=Sequence derived from alignment at Contig_105:98427..103930- (Tribonema minus UTEX_B_3156 )
ATGCTGTTCGGCTTGCAGCAAGCCGTTATAAACGCAGCATTCAGGCCTCT
GCGCTCGCTGCCTGGTCCCTTCAGCTTGGCTCTCAACAAGTGCTCTTGTC
ACTTCCCTCCAGCTCGCAATGCGGATGGGGGCGAGCAGCGCGTGCTTCTA
TTGTACGCCCACCCCGTGCACGAAGGCAGCAGCTACAGCTGTGCGCTGAG
AGATGCTGTCGTGTCAGCTTTGAAGGATCGCGGGCACGACGTGAGGGTCG
CAGACCTGTATGCGGAGGGCTTTGAAGCAGCGCTCAGCGCCGAGGAGCTG
CGCACGTACATGACGGCGTATAGGGAGGGCGCGCTCGCGCCCGCCGTCGC
CGCGCACGTGGAGAGCCTGCGCTGGGCTCAGGGCCTCGTGTTCGTGTACC
CAACGTGGTGGTACACGCCGCCGGCGATACTGAAGGGCTGGTTCGATCGC
TGCCTGTGCCCCGGTGCCACCTTTGACATGCCCGATGGGACAACGCCCAC
TAACCCTAATACCGGGGTCATCAGCCGCCTGACCAACATCAAACGCATAG
GCGTGGTTTCTACGTACGGCAACCAATGGCAGCACGTGCAGTACGTGGGA
GACCCCGGGCGGCGCCTCATCAGCAGGGGACTGCGCGCCATCTGCCACCC
CGACTGCTCCGTGCTGTGGCTGGGGCTGCACGGCGTGGAGACGTGTGCGC
AGGAGCGGCGCAGCGCGTTCCTGGAGCACGTGCGCCAGGAATTTTCCTGG
TTCTGA
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