mRNA_127 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|157402
Unique NamemRNA_127
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|157402 vs. uniprot
Match: A0A835Z4G1_9STRA (Ankyrin repeat-containing domain protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4G1_9STRA)

HSP 1 Score: 259 bits (663), Expect = 1.790e-85
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1 
Query:    1 MHYAAAAGRDDVLAFLAAKRGRCRARSREGLTALHIAARSRSVPCATLLLAVGASVDDTDAAGETPLFNAVKNGDRSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASANLPFITECTHRIAFEQREQKNIMGLTPQDIIERGSCDLMRNASQEWEDRHRGMHGSHAPL 600
            MHYAAAAGRDDVLAFLAAKRGRCRARSREGLTALHIAARSRSVPCATLLLAVGASVDDTDAAGETPLFNAVKNGDRSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASANLPFITECTHRIAFEQREQKNIMGLTPQDIIERGSCDLMRNASQEWEDRHRGMHGSHAPL
Sbjct:    1 MHYAAAAGRDDVLAFLAAKRGRCRARSREGLTALHIAARSRSVPCATLLLAVGASVDDTDAAGETPLFNAVKNGDRSMMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAASANLPFITECTHRIAFEQREQKNIMGLTPQDIIERGSCDLMRNASQEWEDRHRGMHGSHAPL 200
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|157402 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z4G1_9STRA1.790e-85100.00Ankyrin repeat-containing domain protein n=2 Tax=T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_3contigContig_3:537408..538010 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|157402|e_gw1.3.356.1
Hectar predicted targeting categoryother localisation
TranscriptId157724
TrackFilteredModels1
ProteinId157402
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157402gene_127Tribonema minus UTEX_B_3156 geneContig_3 537408..538010 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_127_1exon_127_1Tribonema minus UTEX_B_3156 exonContig_3 537408..538010 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_127CDS_127Tribonema minus UTEX_B_3156 CDSContig_3 537408..538010 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|157402Trimin1|157402|e_gw1.3.356.1Tribonema minus UTEX_B_3156 polypeptideContig_3 537408..538010 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_127 ID=mRNA_127|Name=jgi.p|Trimin1|157402|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=603bp|location=Sequence derived from alignment at Contig_3:537408..538010+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACTATGCTGCTGCTGCGGGCAGGGATGACGTCCTCGCTTTCCTGGC
GGCAAAGAGGGGGCGCTGCAGAGCGAGGTCGAGAGAAGGCCTTACCGCGC
TACACATTGCGGCGCGGTCTCGGTCTGTGCCCTGCGCGACGCTATTGCTC
GCCGTTGGTGCGTCCGTGGACGACACAGACGCTGCAGGCGAGACGCCTCT
CTTCAATGCCGTGAAAAACGGGGATCGCTCCATGATGTCTCTGCTTCTCG
ACAATGGAGCGGATGTTGACGCCAGAAACGCAGCAGGAAGCAGCATTATG
CATCTCGCAGCGCACCACCACTGCGCACTGCTCCTGTCCGCACTCATTTC
AAGATCACCCGACATGAGAACGGTCGACTCTGCAGGCAACACGGCCCTGC
ACATCGCTGCTGCATCTGCCAACCTCCCCTTCATAACCGAGTGCACGCAC
AGGATCGCCTTTGAGCAGCGTGAGCAGAAGAACATCATGGGTTTGACCCC
ACAAGACATCATCGAGAGGGGGAGCTGCGACCTGATGCGCAACGCCTCCC
AAGAATGGGAGGACCGGCACCGCGGAATGCACGGCTCACACGCCCCCCTT
TAA
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protein sequence of jgi.p|Trimin1|157402

>Trimin1|157402|e_gw1.3.356.1 ID=Trimin1|157402|e_gw1.3.356.1|Name=jgi.p|Trimin1|157402|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=201bp
MHYAAAAGRDDVLAFLAAKRGRCRARSREGLTALHIAARSRSVPCATLLL
AVGASVDDTDAAGETPLFNAVKNGDRSMMSLLLDNGADVDARNAAGSSIM
HLAAHHHCALLLSALISRSPDMRTVDSAGNTALHIAAASANLPFITECTH
RIAFEQREQKNIMGLTPQDIIERGSCDLMRNASQEWEDRHRGMHGSHAPL
*
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mRNA from alignment at Contig_3:537408..538010+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_127 ID=mRNA_127|Name=jgi.p|Trimin1|157402|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=603bp|location=Sequence derived from alignment at Contig_3:537408..538010+ (Tribonema minus UTEX_B_3156 )
ATGCACTATGCTGCTGCTGCGGGCAGGGATGACGTCCTCGCTTTCCTGGC
GGCAAAGAGGGGGCGCTGCAGAGCGAGGTCGAGAGAAGGCCTTACCGCGC
TACACATTGCGGCGCGGTCTCGGTCTGTGCCCTGCGCGACGCTATTGCTC
GCCGTTGGTGCGTCCGTGGACGACACAGACGCTGCAGGCGAGACGCCTCT
CTTCAATGCCGTGAAAAACGGGGATCGCTCCATGATGTCTCTGCTTCTCG
ACAATGGAGCGGATGTTGACGCCAGAAACGCAGCAGGAAGCAGCATTATG
CATCTCGCAGCGCACCACCACTGCGCACTGCTCCTGTCCGCACTCATTTC
AAGATCACCCGACATGAGAACGGTCGACTCTGCAGGCAACACGGCCCTGC
ACATCGCTGCTGCATCTGCCAACCTCCCCTTCATAACCGAGTGCACGCAC
AGGATCGCCTTTGAGCAGCGTGAGCAGAAGAACATCATGGGTTTGACCCC
ACAAGACATCATCGAGAGGGGGAGCTGCGACCTGATGCGCAACGCCTCCC
AAGAATGGGAGGACCGGCACCGCGGAATGCACGGCTCACACGCCCCCCTT
TAA
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Coding sequence (CDS) from alignment at Contig_3:537408..538010+

>mRNA_127 ID=mRNA_127|Name=jgi.p|Trimin1|157402|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=603bp|location=Sequence derived from alignment at Contig_3:537408..538010+ (Tribonema minus UTEX_B_3156 )
ATGCACTATGCTGCTGCTGCGGGCAGGGATGACGTCCTCGCTTTCCTGGC
GGCAAAGAGGGGGCGCTGCAGAGCGAGGTCGAGAGAAGGCCTTACCGCGC
TACACATTGCGGCGCGGTCTCGGTCTGTGCCCTGCGCGACGCTATTGCTC
GCCGTTGGTGCGTCCGTGGACGACACAGACGCTGCAGGCGAGACGCCTCT
CTTCAATGCCGTGAAAAACGGGGATCGCTCCATGATGTCTCTGCTTCTCG
ACAATGGAGCGGATGTTGACGCCAGAAACGCAGCAGGAAGCAGCATTATG
CATCTCGCAGCGCACCACCACTGCGCACTGCTCCTGTCCGCACTCATTTC
AAGATCACCCGACATGAGAACGGTCGACTCTGCAGGCAACACGGCCCTGC
ACATCGCTGCTGCATCTGCCAACCTCCCCTTCATAACCGAGTGCACGCAC
AGGATCGCCTTTGAGCAGCGTGAGCAGAAGAACATCATGGGTTTGACCCC
ACAAGACATCATCGAGAGGGGGAGCTGCGACCTGATGCGCAACGCCTCCC
AAGAATGGGAGGACCGGCACCGCGGAATGCACGGCTCACACGCCCCCCTT
TAA
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