mRNA_1269 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348005
Unique NamemRNA_1269
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: A0A836CJ02_9STRA (Tat binding protein 1-interacting protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ02_9STRA)

HSP 1 Score: 537 bits (1383), Expect = 1.690e-188
Identity = 370/370 (100.00%), Postives = 370/370 (100.00%), Query Frame = 1 
Query:    1 MGGSSDESDAFVDEESEDAVVSSAGDESDXXXXXXXEKPKKKAPAKTPAKAKXXXSTPKXXXXXXXXXXXXXAPKTTVSRGTPPMAEAKPAAARKRAAPSADGNSATKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPAAAAVKKTPEQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGELQALAAEEKDLSAQXXXXXXXXXXXXSDNAALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPDADTVVPPKMSLGEPDSQHPAHARA 1110
            MGGSSDESDAFVDEESEDAVVSSAGDESDXXXXXXXEKPKKKAPAKTPAKAKXXXSTPKXXXXXXXXXXXXXAPKTTVSRGTPPMAEAKPAAARKRAAPSADGNSATKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPAAAAVKKTPEQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGELQALAAEEKDLSAQXXXXXXXXXXXXSDNAALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPDADTVVPPKMSLGEPDSQHPAHARA
Sbjct:    1 MGGSSDESDAFVDEESEDAVVSSAGDESDXXXXXXXEKPKKKAPAKTPAKAKXXXSTPKXXXXXXXXXXXXXAPKTTVSRGTPPMAEAKPAAARKRAAPSADGNSATKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPAAAAVKKTPEQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGELQALAAEEKDLSAQXXXXXXXXXXXXSDNAALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPDADTVVPPKMSLGEPDSQHPAHARA 370
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: D7G4U2_ECTSI (Homologous-pairing protein 2 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4U2_ECTSI)

HSP 1 Score: 162 bits (410), Expect = 8.800e-43
Identity = 94/210 (44.76%), Postives = 128/210 (60.95%), Query Frame = 1 
Query:  451 KTPEQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRL-----EADLGELQALAAEEKDLSAQXXXXXXXXXXXXSDNAALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPDADTVVPPKM 1065
            KTP+ AV DYM Q+NRPYS +N+FDNL +KIP+ MVQK+LD+LV+ G L  +EYGKA IYY NQ  L     +A   +++ L  E K L++Q            +  ++L+ QP DD L ++L       +  + R    +G QG       M  A+  FNK R +WV RK  A + VD I+DGMEKKPKVVM+++GV+PD D + PPKM
Sbjct:  112 KTPKAAVSDYMLQSNRPYSYINVFDNLRKKIPKAMVQKLLDELVRDGTLKLQEYGKARIYYANQDALPNGAGDASADKMRTLDQEAKTLTSQLEIVSKQEQQTRARASSLSCQPTDDELTKKLANCAQELEQAEARNGAAKG-QGRSVAAGGMKTAKQSFNKFRALWVTRKRNAMDVVDMIADGMEKKPKVVMEMLGVEPDEDPI-PPKM 319
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: A0A6H5JRD1_9PHAE (Homologous-pairing protein 2 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRD1_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 8.030e-42
Identity = 100/220 (45.45%), Postives = 137/220 (62.27%), Query Frame = 1 
Query:  433 AAAAVKKTPEQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRL-----EADLGELQALAAEEKDLSAQXXXXXXXXXXXXSDNAALAAQPADDALEEELTALQNANDAEDQRLAGIRG--AQGAGADPAA--MSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPDADTVVPPKM 1065
            A+ +  KTP+ AV DYM Q+NRPYS +N+FDNL +KIP+ MVQK+LD+LV+ G L  +EYGKA IYY NQ  L     +A   +++ L  E K L++Q            +  ++L+ QP DD L ++L     AN A++   A  R   A+G G   AA  M  A+  FNK R +WV RK  A + VD I+DGMEKKPKVVM+++GV+PD + + PPKM
Sbjct:  219 ASGSAPKTPKAAVSDYMLQSNRPYSYINVFDNLRKKIPKAMVQKLLDELVRDGTLKLQEYGKARIYYANQDALPNGAGDASADKMRTLDQEAKTLTSQLEIVSKQEQQTRARVSSLSCQPTDDELAKKL-----ANSAQELEQAEARNGAAKGQGRSVAAGGMKAAKQSFNKFRALWVTRKRNAMDVVDMIADGMEKKPKVVMEMLGVEPDEEPI-PPKM 432
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: A0A6A3DU84_9STRA (TBPIP domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3DU84_9STRA)

HSP 1 Score: 125 bits (315), Expect = 4.920e-29
Identity = 79/197 (40.10%), Postives = 112/197 (56.85%), Query Frame = 1 
Query:  460 EQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGELQALAAEE--KDLSAQXXXXXXXXXXXXSDNAALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPDAD 1044
            E AV DYMR+TNRPYS++N+F+N+HR I +  + K+LD LV   EL+SK YGKA IYY NQ+ L     E + LA EE  K ++A             +  A + +Q +D  L+  L  L       ++++  +     A   P   +  +  F K R  WV RK  A + V++I+DGMEKKPK V+DL+GV+ DAD
Sbjct:  128 EAAVLDYMRKTNRPYSLLNVFENMHRAIAKPSLTKLLDNLVAKEELVSKTYGKAKIYYMNQSNLPVP-SEEERLALEEQIKVVTADCAASEQELKSAEATLAGITSQISDADLDAALKQLDEEAAELEKKVETLDQPGRAPVSPGRKNALKRKFTKYRTAWVARKRIAMDGVNQIADGMEKKPKAVIDLVGVETDAD 323
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: A0A225V1S8_9STRA (Pairing protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V1S8_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.080e-28
Identity = 79/213 (37.09%), Postives = 114/213 (53.52%), Query Frame = 1 
Query:  436 AAAVKKTP----------EQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGELQALAAEE--KDLSAQXXXXXXXXXXXXSDNAALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPD 1038
            A+  KK+P          E AV DYMR+TNRPYS++N+F+N+HR I +  +  +LD L    EL+SK YGKA IYY NQ+ L     E + LA EE  K ++A             +  A++ +Q +D  L+  L  L       ++++  +     A   P      +  F K R  WV RK  A + V++I+DGMEKKPK V+DL+GV+ D
Sbjct:    1 ASGAKKSPAVKPMKAADAEAAVLDYMRKTNRPYSLLNVFENMHRAIAKPSLTTLLDNLTAKEELVSKTYGKAKIYYMNQSNLPVP-SEAERLALEEQIKVVTADCVASEQELKSAEATLASIKSQLSDADLDAALKQLDEEAATLEKKMETLDQPGRAPVSPGRKEALKRKFTKYRTAWVSRKRIAMDGVNQIADGMEKKPKAVLDLVGVETD 212
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: A0A484DZL4_BRELC (Homologous-pairing protein 2 homolog n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZL4_BRELC)

HSP 1 Score: 122 bits (307), Expect = 3.570e-28
Identity = 75/196 (38.27%), Postives = 111/196 (56.63%), Query Frame = 1 
Query:  460 EQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGEL-QALAAEEKDLSAQXXXXXXXXXXXXSDNAALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPDAD 1044
            E AV DYMR+TNRPYS++NIF+N+H+ I +  + ++LD LV   EL+SK YGKA IYY NQ +L     E  + + AE + L+A+            +  AA  AQ +D  LE  L          + ++A +         P A +  + +F K R  WV RK  A + +++I+DGMEKKPK +++L+GV+ D D
Sbjct:   98 ETAVLDYMRKTNRPYSLLNIFENMHKGIAKPTLTRMLDNLVVKQELVSKTYGKATIYYLNQNKLPIPSEEEHKTIEAEIQTLTAECATYEQELKSAKATLAATMAQLSDIDLESALKXXXXXXXXXEAKVASLDKNTCLPVSPGAKNTLKRNFIKYRTAWVARKRIAMDGINQIADGMEKKPKAILELVGVETDED 293
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: A0A5D6YA72_9STRA (TBPIP domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YA72_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.740e-28
Identity = 90/201 (44.78%), Postives = 119/201 (59.20%), Query Frame = 1 
Query:  460 EQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGELQALAAEEKDLSAQXXXXXXXXXXXXSDNAALA---AQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPDADTVV 1053
            + AV DYMR+TNRPYS++N+F+N+HR I +  + KILD L    EL  K YGKA IYY NQ +L A   E +A  + E+ ++A XXXXXXXXXXXX    ALA   +Q +D  LE  L +L +   A + RLA +         P      +  F K R  WV RK    + V++++DGMEKKPK V DL G++ D D  V
Sbjct:  135 KSAVLDYMRKTNRPYSLLNVFENMHRAIAKPALTKILDDLCDKDELAGKTYGKAKIYYANQNKLPAPSEEERA--SVEQQIAAAXXXXXXXXXXXXXXXXALAGINSQMSDAELEAALASLADECSALETRLATLEQPDRKPVSPGRKDTLKRQFTKYRTAWVQRKRIVVDAVNQVADGMEKKPKAVYDLCGIETDEDAGV 333
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: D0NIU5_PHYIT (Pairing protein 2 family protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NIU5_PHYIT)

HSP 1 Score: 121 bits (304), Expect = 1.180e-27
Identity = 76/195 (38.97%), Postives = 110/195 (56.41%), Query Frame = 1 
Query:  460 EQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGELQALAAEE--KDLSAQXXXXXXXXXXXXSDNAALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPD 1038
            E AV DYMR+TNRPYS++N+F+N+HR I +  + K LD LV   EL SK YGKA IYY NQ  L     E + LA EE  K ++A+            +  + +++Q +D   +  L  L++   A + ++  +     A   P   +  +  F K R  WV RK  A + V++I+DGMEKKPK V+DL+GV+ D
Sbjct:  109 EAAVLDYMRKTNRPYSLLNVFENMHRVIAKPSLTKPLDNLVVKEELASKTYGKAKIYYLNQNNLPVP-SEEERLAIEEQIKTVTAECTASEQELKSAETTLSGISSQISDADFDAALNQLEDEAAALETKVETLDQPGRAPVSPGRKNALKRKFTKYRTAWVQRKRIAMDGVNQIADGMEKKPKAVLDLVGVETD 302
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: A0A6G0XWT6_9STRA (Homologous-pairing protein 2 homolog n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XWT6_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.180e-27
Identity = 78/195 (40.00%), Postives = 105/195 (53.85%), Query Frame = 1 
Query:  463 QAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGELQALAAEEKDLSAQXXXXXXXXXXXXSDNAAL---AAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPD 1038
            + V  Y+RQTNRPYS++N+F+NLHR+I +TM+QKILD LV+ GE+  K YGK+ IYY NQ +L A   EL  LA  E  +                  A L    +Q +D  L   L  L+N   +   +L        A  DP A +     F K R  W+ RK    + VD+I++GMEKK K VM+L GV+ D
Sbjct:  110 EEVAKYLRQTNRPYSVLNVFENLHRRIGKTMLQKILDVLVEQGEINVKTYGKSQIYYYNQRKLPAPSAEL--LAKTEDSIQTVFEEVSALEKTLKEKEAVLNGLTSQMSDAELTAALADLENEASSLSAKLQQANERNTAPVDPGAKAHLTKSFQKYRTEWLKRKRIVMDAVDQIAEGMEKKRKDVMELCGVESD 302
[Close]
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Match: A0A024U6Z6_9STRA (Homologous-pairing protein 2 homolog n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6Z6_9STRA)

HSP 1 Score: 121 bits (303), Expect = 2.030e-27
Identity = 79/195 (40.51%), Postives = 106/195 (54.36%), Query Frame = 1 
Query:  463 QAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELLSKEYGKAVIYYCNQTRLEADLGELQALAAEEKDLSAQXXXXXXXXXXXXSDNA---ALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSKARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPD 1038
            + V  YMRQTNRPYS++N+F+NLHR+I +TM+QKILD LV+ GE+  K YGK+ IYY NQ +L     E  ALA  E  ++A                A    L +Q +D  L   L +L+  N     +L  +        DP A +     F K R  WV RK    + +D+I+DGMEKK K V+DL GV+ D
Sbjct:  120 EEVAKYMRQTNRPYSVLNVFENLHRRIGKTMLQKILDVLVEKGEINVKTYGKSQIYYYNQAKLPRPSPE--ALAHIEDQITAASDEVASLEKELKDHEAILHGLNSQLSDAELSVTLESLEAQNATLQAKLQEMDKRPSVVVDPGAKAALTKSFTKYRTEWVKRKRIVMDAIDQIADGMEKKRKDVLDLCGVETD 312
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348005 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ02_9STRA1.690e-188100.00Tat binding protein 1-interacting protein-domain-c... [more]
D7G4U2_ECTSI8.800e-4344.76Homologous-pairing protein 2 homolog n=1 Tax=Ectoc... [more]
A0A6H5JRD1_9PHAE8.030e-4245.45Homologous-pairing protein 2 homolog n=1 Tax=Ectoc... [more]
A0A6A3DU84_9STRA4.920e-2940.10TBPIP domain-containing protein n=3 Tax=Phytophtho... [more]
A0A225V1S8_9STRA2.080e-2837.09Pairing protein (Fragment) n=1 Tax=Phytophthora me... [more]
A0A484DZL4_BRELC3.570e-2838.27Homologous-pairing protein 2 homolog n=1 Tax=Bremi... [more]
A0A5D6YA72_9STRA7.740e-2844.78TBPIP domain-containing protein n=1 Tax=Pythium br... [more]
D0NIU5_PHYIT1.180e-2738.97Pairing protein 2 family protein n=2 Tax=Phytophth... [more]
A0A6G0XWT6_9STRA1.180e-2740.00Homologous-pairing protein 2 homolog n=1 Tax=Aphan... [more]
A0A024U6Z6_9STRA2.030e-2740.51Homologous-pairing protein 2 homolog n=1 Tax=Aphan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_18contigContig_18:296914..303950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348005|estExt_Genemark1.C_Ctg_180032
BRITEko00000,ko03051
KEGG koko:K06695
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006310,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0019904,GO:0022402,GO:0022414,GO:0022607,GO:0030331,GO:0030374,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0034641,GO:0035257,GO:0035258,GO:0035259,GO:0035825,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046966,GO:0046983,GO:0048285,GO:0048518,GO:0048522,GO:0050681,GO:0050692,GO:0050789,GO:0050794,GO:0051026,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051321,GO:0051427,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140110,GO:1901360,GO:1901363,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Preferred namePSMC3IP
Descriptionhomologous recombination
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG4603@1|root,KOG4603@2759|Eukaryota
Evalue3.26e-44
Seed ortholog2880.D7G4U2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTBPIP domain containing protein
Ec32 orthologEc-20_000330.1
TranscriptId348327
TrackFilteredModels1
ProteinId348005
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348005gene_1269Tribonema minus UTEX_B_3156 geneContig_18 296914..303950 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348005Trimin1|348005|estExt_Genemark1.C_Ctg_180032Tribonema minus UTEX_B_3156 polypeptideContig_18 297104..303950 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1269_9exon_1269_9Tribonema minus UTEX_B_3156 exonContig_18 296914..297146 -
exon_1269_8exon_1269_8Tribonema minus UTEX_B_3156 exonContig_18 298693..298862 -
exon_1269_7exon_1269_7Tribonema minus UTEX_B_3156 exonContig_18 299446..299550 -
exon_1269_6exon_1269_6Tribonema minus UTEX_B_3156 exonContig_18 300186..300311 -
exon_1269_5exon_1269_5Tribonema minus UTEX_B_3156 exonContig_18 301300..301418 -
exon_1269_4exon_1269_4Tribonema minus UTEX_B_3156 exonContig_18 302041..302241 -
exon_1269_3exon_1269_3Tribonema minus UTEX_B_3156 exonContig_18 302896..303106 -
exon_1269_2exon_1269_2Tribonema minus UTEX_B_3156 exonContig_18 303374..303430 -
exon_1269_1exon_1269_1Tribonema minus UTEX_B_3156 exonContig_18 303870..303950 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1269UTR3_1269Tribonema minus UTEX_B_3156 three_prime_UTRContig_18 296914..297103 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1269CDS_1269Tribonema minus UTEX_B_3156 CDSContig_18 303870..303950 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1269 ID=mRNA_1269|Name=jgi.p|Trimin1|348005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1303bp|location=Sequence derived from alignment at Contig_18:296914..303950- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGGGCAGCAGCGACGAAAGCGATGCCTTCGTGGACGAAGAATCCGA
GGATGCTGTTGTCAGCAGCGCAGGCGACGAGAGCGACGACAGCGATGACT
TTGAGGACGAAAAGCCGAAGAAGAAGGCTCCCGCCAAGACACCAGCCAAG
GCAAAGCCCAAGGCGAGCACGCCCAAACAGAAGAAGGCATCTGCAAAAGC
GACAGCGGCGGCAGCGGCACCGAAGACCACTGTTTCCAGAGGCACACCGC
CTATGGCCGAGGCCAAACCTGCCGCTGCACGCAAGCGCGCCGCTCCCAGT
GCGGACGGCAACTCCGCGACAAAGAAACCTGCAACTGCGTCCCGCGCAGG
CGCTAGCGCGGGTGCCGTCAGCGCGGCCGCAGTGCCGACGGCAGCGGCGG
CAGCAGCAGCGGCGGCGCCGGCAGCGGACCCTGCTGCGGCAGCAGTGAAG
AAAACGCCGGAGCAGGCTGTTCGCGACTACATGCGGCAGACCAACCGACC
CTACAGCATCGTCAACATCTTCGACAACTTGCACAGGAAGATTCCCAGAA
CCATGGTGCAGAAGATACTGGACCAGCTCGTGCAGTCCGGCGAGCTGCTG
TCCAAGGAGTACGGCAAGGCAGTGATCTACTACTGCAACCAGACGCGGCT
AGAGGCGGACCTAGGCGAGCTGCAAGCGCTGGCTGCGGAGGAGAAGGACC
TCTCAGCCCAGCTGCAGCGCTTGCAGCAGCAGCTGCAGCAGATGCAGTCC
GACAACGCCGCGCTGGCCGCGCAGCCCGCTGACGACGCCCTGGAGGAGGA
GCTGACCGCGCTGCAAAACGCCAACGACGCCGAAGACCAGCGGCTGGCGG
GGATCAGGGGGGCGCAGGGGGCAGGCGCTGACCCCGCGGCAATGTCAAAG
GCGCGCACGCACTTCAACAAGCTGCGGCAGGTGTGGGTGGACCGCAAGAA
CGCCGCGCGCGAGTGGGTCGACCGCATCTCTGACGGCATGGAGAAGAAGC
CCAAGGTCGTCATGGATCTCATGGGCGTAGACCCTGATGCTGACACGGTC
GTGCCGCCCAAGATGAGCCTGGGGGAGCCCGACAGCCAACACCCCGCGCA
CGCGCGCGCCTAGCAGCCTCCGAGCCTCGCAACTCGTCGCCTGACCCAAC
GACCCTTGCGTTGTTGCAGTAAACGCCGTTTACCAGCCGCTGCCGCTGGC
GCTGGCGTCCCAGCCGCCAGACGCGGCGGGCGCGGCGGCGGCGGCGGGGG
CGGGGGCGTTCCAGTCGCCGCCCGCGGGCGCTCCGCCGGCGGAGCCCCAG
TCG
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protein sequence of jgi.p|Trimin1|348005

>Trimin1|348005|estExt_Genemark1.C_Ctg_180032 ID=Trimin1|348005|estExt_Genemark1.C_Ctg_180032|Name=jgi.p|Trimin1|348005|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=371bp
MGGSSDESDAFVDEESEDAVVSSAGDESDDSDDFEDEKPKKKAPAKTPAK
AKPKASTPKQKKASAKATAAAAAPKTTVSRGTPPMAEAKPAAARKRAAPS
ADGNSATKKPATASRAGASAGAVSAAAVPTAAAAAAAAAPAADPAAAAVK
KTPEQAVRDYMRQTNRPYSIVNIFDNLHRKIPRTMVQKILDQLVQSGELL
SKEYGKAVIYYCNQTRLEADLGELQALAAEEKDLSAQLQRLQQQLQQMQS
DNAALAAQPADDALEEELTALQNANDAEDQRLAGIRGAQGAGADPAAMSK
ARTHFNKLRQVWVDRKNAAREWVDRISDGMEKKPKVVMDLMGVDPDADTV
VPPKMSLGEPDSQHPAHARA*
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mRNA from alignment at Contig_18:296914..303950-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1269 ID=mRNA_1269|Name=jgi.p|Trimin1|348005|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7037bp|location=Sequence derived from alignment at Contig_18:296914..303950- (Tribonema minus UTEX_B_3156 )
ATGGGGGGCAGCAGCGACGAAAGCGATGCCTTCGTGGACGAAGAATCCGA
GGATGCTGTTGTCAGCAGCGCAGGCGACGAGGTGAGGGAACAACGCCCGC
AAGTGGCTCATTGTTCAAATTCTCACCTTCAACTTGGTTGCGTTGCAGGC
ATGTCATGTCATGTCAAGGTCTGGCGCCATGCAATACTCTCTTTGTGATC
CATAAACTATATGAACAGCCTCTTGGGTCAAGGCCTGGCGCCATGCAATA
CTGTCTTTGTGATCCATGAACTATATGAACAGCCTCTTGCGTGCTTGTGA
CTGCAGATATCGCCGTGGCTTGTTGGCGATATGGTGCTGGAGACGTTGGG
TGTTGTCACAAAATGACGCAGAACAAGTGCTCAATCACGCCTGATATTAT
CCCATTTTGCACGTTTATCATTACAGCATCCACCTCTCCCACTGCAGTAA
CACATATCACCTGCTCCCTATGACTGCTCAATCCATACATTGCATGATGG
GTTCTTGTGGCATCCCGCAGAGCGACGACAGCGATGACTTTGAGGACGAA
AAGCCGAAGAAGAAGGCTCCCGCCAAGGTGAGAATGCGCGCAAAGACTAG
GGGGTAGAAATAGCTTAGCCAGGCGGCGGTACTTCACCAGCACTAGCCCG
CAGCACTGCACTGACTTCTTCACCTGCTTGCTGTGAACATGCGCTGGCAA
TTTGCAAAAAGGGGCAGGTTTGAAAGCAGTCTTTGTGTGCGCACGTGCCA
ATATTGTCATCGTGCGCACACATCATTGCTGCCATCTAAGTGATACGAAC
CCCCCCCCCCCGCCCCCCCCCGGGGCATCCCCCTTGCGCAGCAGACACCA
GCCAAGGCAAAGCCCAAGGCGAGCACGCCCAAACAGAAGAAGGCATCTGC
AAAAGCGACAGCGGCGGCAGCGGCACCGAAGACCACTGTTTCCAGAGGCA
CACCGCCTATGGCCGAGGCCAAACCTGCCGCTGCACGCAAGCGCGCCGCT
CCCAGTGCGGACGGCAACTCCGCGACAAAGAAACCTGCAACTGCGTCCCG
CGCAGGTGAAGTGCTGCATGTGTGTGTGCGCGTTTCTGGCAGCGTGTGAG
GGCCGGTAGCCTTGAGAGTAGAGGTCATCTGGCACTCCTGAGCTGTGCGG
ACGCAATGTTCCGTACAGCCATTTCAAGTATTGGTGCTGCTCACTTTTCG
CAACATCACGTCTCCGGAGTCCTGACTGCAAAGCTCATGAGCTGATCAAC
GGCGTGCACCCAACTTCAGAGCAGGAATGAGCATCTGTTCCGAGCGACCG
GGGCCTGTGGTGCCCTGAGCTGCCTGTGTCCGCTTTGGCTGTTGCACGCC
TGCGCATTGGCTTTCTTACGCTGGACACAGTATGGCGTGCTTGATTGCGA
GTGATGCTATCATCATTGACCAGCCACGCGCAGCACAGAGTGTTGTACAG
AAAGATGCATATATAGATGCCGGTACCCATCGCTGGCGTGCACGTGGTTG
TGCTGACAACGGCCGCGGCGGCCGCAACAGCAGCACTATCAGAAGCAGCA
GCGGCATCGGCATGGTCAAGGAAATGCACACGGTGTCGCGATACCTTCAG
CTACATGAGCGTCTCTGATGATGCAACCTGCGCCTGCGTCAAGGAAAGGC
ACATGTTGTTGCAATACCTTCAGCTACATTTTGTGGTTCTGATCATGCAT
CCTACGCAGGCGCTAGCGCGGGTGCCGTCAGCGCGGCCGCAGTGCCGACG
GCAGCGGCGGCAGCAGCAGCGGCGGCGCCGGCAGCGGACCCTGCTGCGGC
AGCAGTGAAGAAAACGCCGGAGCAGGCTGTTCGCGACTACATGCGGCAGA
CCAACCGACCCTACAGCATCGTCAACATCTTCGACAACTTGCACAGGAAG
ATTCCCAGAAGTGAGTGGCCCCGTGCGTGATAGAAGTTTGCTGTCGTGTG
GAATTAGTGAGCGCGTTGCGGCAGCCTCCTGCGGCGTTTTCGCAGCGGCT
GACTGTCTGTGGTCGGCTGTCTTGCTGGCGACTGTCTAGTCTACACATAC
TACTGCCTCAGTGTCCCTGATGGGCCGCGATTCCTTTTACCATCCCTAGG
AGAGTCAGCATGAGTTCGCTGCCAGATGAAGTGCGTTCCGCCCTCTTGAC
GCAGTCTGGCCGTGCCGCACTCCACAAACGAACGCCAGCACATCCGCTCG
CGGCGTCCGTCCGCATGCAGCGCACTGTCTGTGCAGTGCTGCTCGATTCA
AGGTAGTTGTCACTGCGCTTGACCGAAGAGCTGCGCCCGCTCATTGCTAC
GCAGCGTCGTCACGCAACAACGTAACGTGCGGGCGCAATATCATCAATAC
CTCAGTGCTTAGCTGAAGCGCTGCATACATACCCCGCTCCGCGCGCGGCA
GCGCGCGCCGCTCGTCGACGCGCAGCATCACCGGTCAACGCCACGCACGC
GCACAGCTCTCCGTTTCACGCACATCACGCCTTTCGTGCGCGCGGCCACT
GCCCCCCCCCCCCCCCCGGCTCGCGCCCGCAGCCATGGTGCAGAAGATAC
TGGACCAGCTCGTGCAGTCCGGCGAGCTGCTGTCCAAGGAGTACGGCAAG
GCAGTGATCTACTACTGCAACCAGACGCGGCTAGAGGCGGACCTAGGCGA
GGTGGCGCCGGACAAGGCATGGCTGAGCATCACCAGTGCATGATCGACAT
GTGCATCAGCGTGGCCTGGCCAAGCGGAAGTGTGTACGTGCTTAGGGTTA
GAGTTAGAGTTAGGGTTAGGGTCAGGGTTAGGGTTAGGGTTCCTGAGCAA
GGTGGTGCCGGACACGGCGAGCCTGAGCATCGCCACGGCATGATGAACAT
GCGCAGCCTTGGCGTTTGCGTTGCATCGCAGAGAGCTGCTGCTCACCAGC
CTGTTGCTCCGACATCAAGGTGACCGATGCAACAGAAGGCCGACGCCAGT
CGTGTGCTGCCAGAGGTGGCGTCGGACAAGGCACGAATGAATCAGCGCAA
AAGACCCTGATGCCTTAACATATGTAGGGCATGCGCAACTTGACCCAGGA
TATAAGCAGCGCAAGTGGCCTGGCTTGGTTGGAGTGTCTACATGTTTGGA
GTCAAGATTAGGGCTCCTGGGCGAGGTTGCGCCGGACAACGCGAGGCTGA
GCGTCACCACGGCATGATCGATGTGCACGGCGGCGTGCGCGTGCACGCGC
TTCTGATGATGTGTGGGGGTGTCGCAGCGCCCGCCGTGACCCTCCTGAGC
GTTGCGCGCCACCGTCACCCTTCTGAGCATTGCGCGTGTGGCGCGCTACT
TGCTCTGCCGCTGGCGCGATGGCTCAGGGGATGCGGTAGTGCCCACCGAA
TGAAGGAAACAAATGCTTTGGCAGTCTTGCGCGCGTTCGCTCCGGCACTT
TGTATGCAGACACTGCCTGTGGTAGCAGCACCGCGTGCTCGTGTACTGAA
TACGTGAGCTGTATCCAGTGCCATCGAGCTGCATCCAGCGGCTGTAGTAC
GCCAATGCCTACTGACAACGCCGCAAAAGCCTGCTGCGCGAGCTCTGCGC
ACTGCGTGCTTACGCAACCCCCCCCCCCCTGCCCCCCCCGACGGCCGGCC
GCTTTCTCTGTGCTCACCTCCGACGATCACATCATGCAGCTGCAAGCGCT
GGCTGCGGAGGAGAAGGACCTCTCAGCCCAGCTGCAGCGCTTGCAGCAGC
AGCTGCAGCAGATGCAGTCCGACAACGCCGCGCTGGCCGCGCAGCCCGCT
GACGACGCCCTGGAGGTATGTATGTACTGCACGCGACACATGCTTCCAGG
CATGAGATTTGCGAATCGAGAATGCTTGCGGGTGAAAAGGTTTGTTGATG
TCATTGTTGCTCGGAGCTCCTCGCCCACATGAGGTGATGCGCGCATCGAT
GTGAAATGTGTGCAAAGCTCAGCTTGGCATTACGCGCGCGTATTCGAATG
GGCATCAATGCACTACTTCCACAATAAAAGCGCATGGGACAGTGTGTGCA
AGGGTTCCACACATGCCTCGTCATATGGGTATCAATGTACATGGGCATAT
ACTTCGAAGCAGATTACAGGACGTGATGTATAGATCGTGGCAGCTTTGTT
CTCTGTTGAACAGCGAGTGGCCACAATGGTTGTTTCTGGTACATTGGGCT
GCCCGCTCCAGATCAAGTACTTCGAAGTAGCTGTTGTCCGCCTTGCTGAG
TCACTGCAATGCCGCGGATACCTTTGTGTCACCTATATGTAAAGACGCCC
AAACTCTGGCCGTTGTTGACGGGCAAAGCTTGCGCGCGCGACAAAAGATG
GACCGCCCACGCCGTGCCCGCTGCGCCGCTTCCAACATTGACAAACATTG
ATACAACTTGCCAACCGCGCTTGCACGCTCGCCATGCGCGTGGCGCGCAG
GAGGAGCTGACCGCGCTGCAAAACGCCAACGACGCCGAAGACCAGCGGCT
GGCGGGGATCAGGGGGGCGCAGGGGGCAGGCGCTGACCCCGCGGCAATGT
CAAAGGTGAATCTTGTTGGCCAACAAATGCAGCTGACTTACAGTTCATGC
TGTCTCATGTTCACGCCGTTGGAACTGGTCTCACACAGACATGATCTGCT
TATGTGGTTTGAGTTGCCAGTGCGGTTATCAGTGCATGAGGCAGCTGCAG
CGTGCAGAGTGGGCATGCCAGCCCACTACCATGCGCGCCTTGCGTTGTGC
TTGAGCTTGGCGAGTCGCATAAGCACGTGTGCATGGGACGGCAGAGGAGC
TGCATGAGCTCATGCGTTTTGAAAAGCTGTACATCTGCATGCCTGGTTGC
TGAACGCAGCTGTTTGTTGACGTAAGCTGAGGTAATCCTGTTGAGACATC
GATGGCGGCGTTGAGCGCACAAAGCTTGGCCATCATCAACGCAAGTACGC
AGGCTCATCGCCGTTCACCTGACATGAGCCCCTGCGCGTAAACAGCGCAC
GGACACATCCTGCGTACCAAGTGAACAGGGCTTCTAGGACCCCCCCCCCC
CTCCCCCCTTGCCCCATCTAGGAACTTCAACATGATCCCTCCTTTCTGTA
ACCTGAACAAAAGCGCTGCACCGCGTCCGCACTGGCAGGCGCGCACGCAC
TTCAACAAGCTGCGGCAGGTGTGGGTGGACCGCAAGAACGCCGCGCGCGA
GTGGGTCGACCGCATCTCTGACGGCATGGAGAAGAAGCCCAAGGTCGTCA
TGGATCTCATGGGCGTAGACCCTGATGCTGACACGGTCGTGCCGCCCAAG
ATGAGCCTGTGACGTCGTGCTATCGTCGCATGTACACGTCATGGTGTCGA
GCGCTGACTTGGATGTGACGACGCGCCGCCGTCTCAAAAGTGTGCATGTA
GTGTCATCATCGCATGTACACGTCATGGTGTCGAGCACTGACTTGGATGT
GAGCCTGTGATGTTGTGCCGCCGTCACACAAGTACGCATACATGGTGGCG
AACATTGGCCTAGATGCGGGCACACGGCTGTACTCGGGTACGGGTGCGGT
GGGGGTCGCCCAGTATGAGCTGCTACAGCCCACGGCAGCACCGTCACATG
TACAGTACAATGTACACTGTGCCGTACGTTGTACAGTACAGTACAGAACA
GTACACCGCAATGACGAGCGCGCCGGGAGAAGCGACTGCTTACGCATACA
GGCCATCAGCCTGCTGCTGCAGCGAGCGGGCGCTGAGGGAAGACAAGTTG
CAACACATGACCAGGTCATGCAGGGGAGTGAAGAAAATACGTTGATTGAG
GCGCCCCGTGCCTCGCGCATGAGTGGTGTCGGTCATTTTGTGAGTGTCTG
ATTCAAAATCATGAGAAACTGGCCTTGACCAGCCCGACTGCAGCAATGTC
AGCTCAATGTGGAATCGCTGTCAGGCGATGCGGCTTGTGCATTCTTTCCA
TTGGCTCTGATGTTGTGTGCTCGGTGCTCGGTGTGTTGAGCTTCCATCAG
GCTTGCATGTGTGCGCGTGCAGGATGCACATGGGATATACACTGCCCGCA
GCTGTTTCAGCATGTGCTTCTCCATGGTATGCAATATTGCGCGAAGAGGT
TGTCTGCGCGCTGTCAGTTGCTGTGTGTATGCATGCACCCTGCTTGCATG
CACTTGCTGTCGGCCAATGTCAGCATTGTGATGCATCAGGACGCGATGCA
TGCATGCCACCGGTGGTGAGAGTACCCATGACTGTATTTTGATTCTGGCA
TTGCAGCGGTGATATTTTTCAGTAGTCGCTGCCTAGTTAAAGTCAAGCAG
ATGTATGTACATTGGCAGCAGCACTCGATGCAATGGCAGACTTGCATACA
GCCGCAGGAGGGCAGCCTGCTGCATACCAGTAATCGCTCTGACGTCAAGG
CGAACGAGCATGGCTTCCCATTATCGTCTTGCACAACACTAAAACGCATT
GACAACACCTGGGCGCACAGGCGCAGCACAACCTCAAATGCGCAGTTCGT
AGTGTGCATCTCGCACCGCATAACAAGTCACATGTCGTTCATCATGAGCA
TTGCAAGCACATGGCAGGGCACCACTGCCTGAGGTCCACAATGCTCGTCC
GCGCATCGCAAGAGGCACGGCAAGCGAGCAGCTGCGAACCGCAGACACGA
CAAGCAGCGCAGACGCAGAGACATCGCCGCGCACGATCATCAGCACGCCG
CGGCTTGCATTATTGGCGCGGCAGCAGCGCGCGCATGACACACGCCGCGC
CCGCGACCAACCTCCCCCAAGACCTATTTTCAGCAGTGCTGCGCCGCTGC
CGCGCGCGCGCCGCTTGAGCGGGCCGCCGCATCCGACCCCCCCCCCTCCC
GAAGGGGGGAGCCCGACAGCCAACACCCCGCGCACGCGCGCGCCTAGCAG
CCTCCGAGCCTCGCAACTCGTCGCCTGACCCAACGACCCTTGCGTTGTTG
CAGTAAACGCCGTTTACCAGCCGCTGCCGCTGGCGCTGGCGTCCCAGCCG
CCAGACGCGGCGGGCGCGGCGGCGGCGGCGGGGGCGGGGGCGTTCCAGTC
GCCGCCCGCGGGCGCTCCGCCGGCGGAGCCCCAGTCG
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Coding sequence (CDS) from alignment at Contig_18:296914..303950-

>mRNA_1269 ID=mRNA_1269|Name=jgi.p|Trimin1|348005|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1113bp|location=Sequence derived from alignment at Contig_18:296914..303950- (Tribonema minus UTEX_B_3156 )
ATGGGGGGCAGCAGCGACGAAAGCGATGCCTTCGTGGACGAAGAATCCGA
GGATGCTGTTGTCAGCAGCGCAGGCGACGAGAGCGACGACAGCGATGACT
TTGAGGACGAAAAGCCGAAGAAGAAGGCTCCCGCCAAGACACCAGCCAAG
GCAAAGCCCAAGGCGAGCACGCCCAAACAGAAGAAGGCATCTGCAAAAGC
GACAGCGGCGGCAGCGGCACCGAAGACCACTGTTTCCAGAGGCACACCGC
CTATGGCCGAGGCCAAACCTGCCGCTGCACGCAAGCGCGCCGCTCCCAGT
GCGGACGGCAACTCCGCGACAAAGAAACCTGCAACTGCGTCCCGCGCAGG
CGCTAGCGCGGGTGCCGTCAGCGCGGCCGCAGTGCCGACGGCAGCGGCGG
CAGCAGCAGCGGCGGCGCCGGCAGCGGACCCTGCTGCGGCAGCAGTGAAG
AAAACGCCGGAGCAGGCTGTTCGCGACTACATGCGGCAGACCAACCGACC
CTACAGCATCGTCAACATCTTCGACAACTTGCACAGGAAGATTCCCAGAA
CCATGGTGCAGAAGATACTGGACCAGCTCGTGCAGTCCGGCGAGCTGCTG
TCCAAGGAGTACGGCAAGGCAGTGATCTACTACTGCAACCAGACGCGGCT
AGAGGCGGACCTAGGCGAGCTGCAAGCGCTGGCTGCGGAGGAGAAGGACC
TCTCAGCCCAGCTGCAGCGCTTGCAGCAGCAGCTGCAGCAGATGCAGTCC
GACAACGCCGCGCTGGCCGCGCAGCCCGCTGACGACGCCCTGGAGGAGGA
GCTGACCGCGCTGCAAAACGCCAACGACGCCGAAGACCAGCGGCTGGCGG
GGATCAGGGGGGCGCAGGGGGCAGGCGCTGACCCCGCGGCAATGTCAAAG
GCGCGCACGCACTTCAACAAGCTGCGGCAGGTGTGGGTGGACCGCAAGAA
CGCCGCGCGCGAGTGGGTCGACCGCATCTCTGACGGCATGGAGAAGAAGC
CCAAGGTCGTCATGGATCTCATGGGCGTAGACCCTGATGCTGACACGGTC
GTGCCGCCCAAGATGAGCCTGGGGGAGCCCGACAGCCAACACCCCGCGCA
CGCGCGCGCCTAG
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