mRNA_12662 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|139818
Unique NamemRNA_12662
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A835YLW5_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLW5_9STRA)

HSP 1 Score: 291 bits (745), Expect = 8.730e-100
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 1
Query:    1 SHNVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL 432
            SHNVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL
Sbjct:    1 SHNVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL 144          
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A835YXR6_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXR6_9STRA)

HSP 1 Score: 210 bits (534), Expect = 8.250e-67
Identity = 98/144 (68.06%), Postives = 121/144 (84.03%), Query Frame = 1
Query:    1 SHNVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL 432
            SHNVLITEWGRAKLTDFGLS+ T+AVSSFTGRST+ GGTVAWM PESFGKR  SA  S+ SD+YSY IVTWEVLAG  G   STPWYGK++VEVI+AV++ GER PL + C+ ++N+S+A +H D+M+RCW+A P++RPTF +L
Sbjct:   49 SHNVLITEWGRAKLTDFGLSKTTNAVSSFTGRSTMGGGTVAWMPPESFGKRLSSALSSSKSDVYSYSIVTWEVLAGTCGVDMSTPWYGKAIVEVIAAVSMRGERPPLADECIEDTNVSRAELHADIMQRCWAADPADRPTFSDL 192          
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A836CGC3_9STRA (Kinase-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGC3_9STRA)

HSP 1 Score: 204 bits (520), Expect = 1.790e-64
Identity = 101/144 (70.14%), Postives = 116/144 (80.56%), Query Frame = 1
Query:    1 SHNVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL 432
            SHNVLIT+WGRAKLTDFGLS+ TSAVSSFTGRST+ GG VA+MAPE+FG  + SAS+SA SD+YSYGIVTWEVLAG+ G A STPWYG+S+VEVISAVT+ GE  PL   C+ N N+S A  H  VMRRCW+A    RPTF EL
Sbjct:   64 SHNVLITDWGRAKLTDFGLSKTTSAVSSFTGRSTMGGGMVAYMAPEAFGNERCSASVSAKSDVYSYGIVTWEVLAGVCGRAGSTPWYGQSIVEVISAVTLRGETPPLPMECIVNKNVSHAEAHAGVMRRCWAASALSRPTFGEL 207          
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A836CB95_9STRA (Kinase-like domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB95_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.330e-58
Identity = 94/144 (65.28%), Postives = 113/144 (78.47%), Query Frame = 1
Query:    1 SHNVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL 432
            S NVLIT+WGRAKLTDFGLSR T AVSSFTGRSTL GGTVAWMAPE+F  R+ SA   A+SD+YSY IVTWEVLAG  G   + PW G S+V+VI+AV I GER PL  GCV+N+N++ AA H  +MRRCW+A P++R  F+E+
Sbjct:   95 SQNVLITDWGRAKLTDFGLSRTTDAVSSFTGRSTLAGGTVAWMAPEAFSARRRSAEHCALSDVYSYAIVTWEVLAGAIGGDAAIPWCGLSIVDVIAAVAIRGERPPLPPGCVANANVAGAARHEALMRRCWAALPADRLPFKEI 238          
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A835YN29_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YN29_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.610e-30
Identity = 67/149 (44.97%), Postives = 96/149 (64.43%), Query Frame = 1
Query:    1 SHNVLITEWGRAKLTDFGLSRITSAVSSFT-GRSTLVGGTVAWMAPESFGKRQGSASMSAM---SDLYSYGIVTWEVLAG--IRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEE 429
            SHNVL+T+  RA LTDFG+S+  SA+++ T  +ST  GGT+AW APE F  R G    S     SD+YSYGIV WEVL     R   ++  W  + + E+++AV + G++ PL    VS++N+++AA H  +MRRC +A+P  RP+F E
Sbjct:   97 SHNVLLTDDWRAVLTDFGMSKTCSAITAATHAKSTYAGGTLAWTAPEVFKPRVGGGHRSNFTFKSDVYSYGIVVWEVLVADAARAAPQARRWIQQQMGELVAAV-LRGDQPPLPADSVSDANVARAASHEALMRRCLAAEPEARPSFRE 244          
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A835Z605_9STRA (Protein kinase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z605_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.140e-24
Identity = 66/149 (44.30%), Postives = 90/149 (60.40%), Query Frame = 1
Query:    1 SHNVLITEWGRAKLTDFGLSRITSAVSSFT-GR--STLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCV--SNSNISKAAMHVDVMRRCWSAQPSERPTFEEL 432
            SHNVLI +  RAKL+DFGLSR  S ++SF+ GR       GT+ WM PE F      A  +   D+YSYG+V WEVLAG  G   +TPW      ++I+AV + GER  L   C    ++N+ +A +H  +M  C +A P+ERPTF+E+
Sbjct: 1039 SHNVLIGDDFRAKLSDFGLSRTASTITSFSSGRCGGXXXXGTLNWMPPECFDASAAGAD-APKRDVYSYGMVVWEVLAGEAGPEANTPWGRTPPAQLIAAV-LRGERPALPACCDVRGDANVRRAPLHRGIMAACLAAAPAERPTFDEI 1185          
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A7S0RLB7_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RLB7_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 4.740e-18
Identity = 55/144 (38.19%), Postives = 76/144 (52.78%), Query Frame = 1
Query:    1 SHNVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL 432
            S N+L+   G AK++DFGL+R     S  T R     GT+ +MAPE F  R G  S  A  D++S+G+V WE+L G R      PW     V++I  V     RLPL E          AA+  D++ RCW+A P  RPT +++
Sbjct:   30 SENILLDAAGHAKISDFGLARCKYTSSLKTARREA--GTLIYMAPECFDPRVGGVSGKA--DVFSFGVVVWEMLVGSR------PWSEYREVQIIYQVAFQNARLPLPEDAAR----CPAALR-DLITRCWAADPHARPTAQDV 158          
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A6U4KGP8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4KGP8_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.770e-16
Identity = 50/144 (34.72%), Postives = 74/144 (51.39%), Query Frame = 1
Query:    1 SHNVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL 432
            S N+L+ E    K+TDFGLSR  +   S  G  T   GT  WMAPE     +        +D+YS+GI+ WEV      +  + P+ G + V++++AV    ERLP+  G            + D++ RCW+  P+ERP F E+
Sbjct:  221 SLNILLDEHWNTKVTDFGLSRFKA--DSIAGNMTGQTGTYHWMAPEVINAEK----YDERADVYSFGIILWEV------YGRAIPYEGMTPVQIVAAVVARRERLPIPAGA--------PPQYADLIARCWAHDPAERPQFSEV 344          
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A2J7ZR55_9CHLO (Putative serine/threonine-protein kinase n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J7ZR55_9CHLO)

HSP 1 Score: 81.6 bits (200), Expect = 3.060e-16
Identity = 52/147 (35.37%), Postives = 79/147 (53.74%), Query Frame = 1
Query:    7 NVLITE-WGR---AKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHE-GCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL 432
            NVLI + WG     K++DFGLSR+ S+++          GT A++APE F     + S+S  +D+YS+G++ WE+LAG+R      PW G  VV +   VT+ G RLP+     + +S         ++++ CW   P  RP   EL
Sbjct:   77 NVLINDPWGERRVVKISDFGLSRLNSSIALTQSPEA---GTPAYVAPECF--EVDNYSVSYKADMYSFGVLLWEMLAGVR------PWEGLGVVPIAFQVTVKGRRLPMPPLDKLGSSPAQWPPRLCEMLQECWDQAPDRRPAAAEL 212          
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Match: A0A150GWX7_GONPE (Protein kinase domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GWX7_GONPE)

HSP 1 Score: 84.3 bits (207), Expect = 3.180e-16
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    7 NVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGKRQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTIHGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPT 420
            NVLI+  G AKL+DFGL+R+T+A    T       G+V +MAPE FG      ++S  SD++++G++ WE+LA +R      PW G   ++V  AV+I GERLPL    V      +    V ++  CW   P  RP+
Sbjct:  333 NVLISSDGTAKLSDFGLARLTAATLHATNPEV---GSVPYMAPECFGTN--GHTVSHRSDMFAFGVLLWELLARVR------PWAGSHHIKVALAVSIRGERLPL---AVIQDRAPRRL--VQLIEECWHEDPYRRPS 454          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|139818 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YLW5_9STRA8.730e-100100.00Kinase-like domain-containing protein (Fragment) n... [more]
A0A835YXR6_9STRA8.250e-6768.06Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CGC3_9STRA1.790e-6470.14Kinase-like domain-containing protein (Fragment) n... [more]
A0A836CB95_9STRA1.330e-5865.28Kinase-like domain-containing protein n=2 Tax=Trib... [more]
A0A835YN29_9STRA4.610e-3044.97Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835Z605_9STRA1.140e-2444.30Protein kinase domain-containing protein n=1 Tax=T... [more]
A0A7S0RLB7_9CHLO4.740e-1838.19Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]
A0A6U4KGP8_9STRA1.770e-1634.72Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2J7ZR55_9CHLO3.060e-1635.37Putative serine/threonine-protein kinase n=1 Tax=T... [more]
A0A150GWX7_GONPE3.180e-1638.41Protein kinase domain-containing protein n=1 Tax=G... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_65contigContig_65:224012..224772 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|139818|gw1.65.50.1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005886,GO:0016020,GO:0044424,GO:0044444,GO:0044464,GO:0071944
Preferred nameRCCD1
Descriptionguanyl-nucleotide exchange factor activity
COG categoryDZ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0515@1|root,COG5184@1|root,KOG0192@2759|Eukaryota,KOG1426@2759|Eukaryota
Evalue5.11e-14
Seed ortholog2880.D7FKP6
Hectar predicted targeting categoryother localisation
TranscriptId140140
TrackFilteredModels1
ProteinId139818
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139818gene_12662Tribonema minus UTEX_B_3156 geneContig_65 224012..224772 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12662_1exon_12662_1Tribonema minus UTEX_B_3156 exonContig_65 224012..224129 +
exon_12662_2exon_12662_2Tribonema minus UTEX_B_3156 exonContig_65 224459..224772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12662CDS_12662Tribonema minus UTEX_B_3156 CDSContig_65 224012..224129 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|139818Trimin1|139818|gw1.65.50.1Tribonema minus UTEX_B_3156 polypeptideContig_65 224012..224772 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12662 ID=mRNA_12662|Name=jgi.p|Trimin1|139818|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=432bp|location=Sequence derived from alignment at Contig_65:224012..224772+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGCCACAACGTGCTCATCACGGAGTGGGGGCGCGCCAAGCTGACGGACTT
CGGCCTCTCCAGGATCACCAGTGCGGTCAGCAGCTTCACCGGCAGAAGCA
CCCTCGTGGGTGGCACTGTGGCGTGGATGGCCCCGGAGAGCTTTGGGAAG
CGTCAGGGCAGCGCCTCCATGTCCGCCATGAGCGACTTGTACAGCTACGG
CATTGTGACGTGGGAGGTGCTGGCTGGCATTCGAGGCCACGCAGAGAGCA
CGCCGTGGTATGGCAAGTCGGTCGTCGAGGTCATCTCTGCGGTCACCATT
CATGGGGAGCGGCTGCCGCTGCACGAGGGGTGCGTCAGCAACAGCAACAT
CAGCAAGGCCGCGATGCACGTGGATGTCATGCGGCGGTGCTGGTCAGCGC
AGCCGTCTGAGAGGCCAACATTTGAGGAGCTG
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protein sequence of jgi.p|Trimin1|139818

>Trimin1|139818|gw1.65.50.1 ID=Trimin1|139818|gw1.65.50.1|Name=jgi.p|Trimin1|139818|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=144bp
SHNVLITEWGRAKLTDFGLSRITSAVSSFTGRSTLVGGTVAWMAPESFGK
RQGSASMSAMSDLYSYGIVTWEVLAGIRGHAESTPWYGKSVVEVISAVTI
HGERLPLHEGCVSNSNISKAAMHVDVMRRCWSAQPSERPTFEEL
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mRNA from alignment at Contig_65:224012..224772+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12662 ID=mRNA_12662|Name=jgi.p|Trimin1|139818|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=761bp|location=Sequence derived from alignment at Contig_65:224012..224772+ (Tribonema minus UTEX_B_3156 )
AGCCACAACGTGCTCATCACGGAGTGGGGGCGCGCCAAGCTGACGGACTT CGGCCTCTCCAGGATCACCAGTGCGGTCAGCAGCTTCACCGGCAGAAGCA CCCTCGTGGGTGGCACTGGTGAGCTCAGCGGGCGGTGTCATGAGGGGGGT TCTATACGGACTCCGGGGGCGGCGGTTGTGGTACTCTTCAAGTTGCACCG CCAGCAGGAGCAGCAGGGATGACTGGGTCCGTGAATCGAGTGGCACAAAG GTCCCTGTTGCACCTAGGCCCATTGAGCGTACATAACTTGAAGCCTGATG CAATGAAATATTGGTGTACCAAAATGTACTTGTACCTCGAGACAGAGCGT CTCACTGCGCATTGATGATCACTGCTAAGTGACATCGCCAAGTAGCGTGC CCTCACCCACGTTTTCCTTTGCTTCACCCCGTAATGTACTTTTTTAGTGG CGTGGATGGCCCCGGAGAGCTTTGGGAAGCGTCAGGGCAGCGCCTCCATG TCCGCCATGAGCGACTTGTACAGCTACGGCATTGTGACGTGGGAGGTGCT GGCTGGCATTCGAGGCCACGCAGAGAGCACGCCGTGGTATGGCAAGTCGG TCGTCGAGGTCATCTCTGCGGTCACCATTCATGGGGAGCGGCTGCCGCTG CACGAGGGGTGCGTCAGCAACAGCAACATCAGCAAGGCCGCGATGCACGT GGATGTCATGCGGCGGTGCTGGTCAGCGCAGCCGTCTGAGAGGCCAACAT TTGAGGAGCTG
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Coding sequence (CDS) from alignment at Contig_65:224012..224772+

>mRNA_12662 ID=mRNA_12662|Name=jgi.p|Trimin1|139818|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=432bp|location=Sequence derived from alignment at Contig_65:224012..224772+ (Tribonema minus UTEX_B_3156 )
AGCCACAACGTGCTCATCACGGAGTGGGGGCGCGCCAAGCTGACGGACTT
CGGCCTCTCCAGGATCACCAGTGCGGTCAGCAGCTTCACCGGCAGAAGCA
CCCTCGTGGGTGGCACTGTGGCGTGGATGGCCCCGGAGAGCTTTGGGAAG
CGTCAGGGCAGCGCCTCCATGTCCGCCATGAGCGACTTGTACAGCTACGG
CATTGTGACGTGGGAGGTGCTGGCTGGCATTCGAGGCCACGCAGAGAGCA
CGCCGTGGTATGGCAAGTCGGTCGTCGAGGTCATCTCTGCGGTCACCATT
CATGGGGAGCGGCTGCCGCTGCACGAGGGGTGCGTCAGCAACAGCAACAT
CAGCAAGGCCGCGATGCACGTGGATGTCATGCGGCGGTGCTGGTCAGCGC
AGCCGTCTGAGAGGCCAACATTTGAGGAGCTG
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