mRNA_12600 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|154799
Unique NamemRNA_12600
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A836CC17_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC17_9STRA)

HSP 1 Score: 566 bits (1460), Expect = 9.590e-204
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 1
Query:    1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSAXXXXXXXXXXAAPA 888
            IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSAXXXXXXXXXXAAPA
Sbjct:    1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSAXXXXXXXXXXAAPA 296          
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A835ZA42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA42_9STRA)

HSP 1 Score: 257 bits (657), Expect = 1.740e-82
Identity = 138/240 (57.50%), Postives = 160/240 (66.67%), Query Frame = 1
Query:   40 RCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAA-SAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHR 756
            RCEA  CT+RA  TRLATRRHYHA C H H +GAKAGMRFHHHQLEKIRKHQR H R +  A +A       P  +P +V EAL   G EL+D  +WSA A  RL  LVE Q  R       GRVAW+ VAAA+ A        LSA+QCML WR VVN GA + GVGTWC  ED RL  L AHF Q+W+++AR+MPGR PKQCRERFNNV++PA  +  PW P ED LL ++  QTG R
Sbjct:    3 RCEAQDCTMRAAGTRLATRRHYHATCGHVHASGAKAGMRFHHHQLEKIRKHQRAHKRSSVIALTAPAPDSPYPGGLPVEVAEALLRGGAELYDPALWSADAGARLGALVEQQHARRG----VGRVAWDKVAAAMRAPA------LSASQCMLHWRDVVNGGAIIMGVGTWCNAEDTRLRALTAHFRQSWATIARFMPGRGPKQCRERFNNVIDPASHKRAPWKPAEDELLMAVCAQTGER 232          
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A835YQW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW6_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.080e-59
Identity = 122/262 (46.56%), Postives = 148/262 (56.49%), Query Frame = 1
Query:   22 RVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVK 807
            RV    +C A  CTLR  A+ +A RRHYHA+C+HRH  G K GMRFHHHQLEKIRKHQ  HA     A A      +P   P  + E L + G+ELH+   W   AT  L  LV     R S        AW     ALAA        +S  QC+L WR V+N G  VTGV TW + ED RL  LV  F   WS+VA+ +PGREPKQCRERF NVV+P+  R   WTPEED LL  +  +  ++FA  A+     SYN+V+
Sbjct:   11 RVLPSPQCHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHA-----AEASRDRGGAPHLDPSMMAE-LNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSS-------AWGEFPRALAAALPG--FTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKA-WTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVR 256          
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 1.210e-50
Identity = 112/303 (36.96%), Postives = 156/303 (51.49%), Query Frame = 1
Query:    1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRA---------AAASAEEQTWNSPSAVP------------PDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSA 846
            +DP LW  V     C A QC  R+     A RRHYHA C+H H  G + GMRF HHQLEK++KHQR H   A          +++A+ ++  + +A P             + T A+  A +E H  + W+   T RLR LV+    +           W  +A  +  +        +A  CML WR  VN    V G GTW   ED+RL+ LV      WS +AR++PGR  KQCRER+ N ++P+L +  PWT +E+ALL  +     +++A+  R L G SYNDV+NRFN +QR    A
Sbjct:  116 LDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQVSAKQNTQRSSIGSSAAKPRSPTTVAAAPRNKRVAAATSGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPK-----------WSNIADKMPGK--------TATACMLHWRVGVNPDHMVKGSGTWTAEEDERLSKLVEVVGMKWSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQNRFNLIQRRNKRA 399          
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.560e-50
Identity = 110/287 (38.33%), Postives = 152/287 (52.96%), Query Frame = 1
Query:    1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQA-----WSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSA 846
            +D  LWV V  G  C +  CT R  A R+A+RRHYH+ C H H  G K GM FHHHQLEK++KHQR H R A  ++  ++T        P+  +A+  AG+E +    W+   T +L  LV       +        AW ++A     + G         QC+L WR  +N    + G GTW   ED+RL  L   F+       W+ +A  MPGR  KQCRER+NN V+P + +   WT EEDAL+  +  +  ++FA  AR +PG  Y+DVKNRFN L + +  A
Sbjct:  339 LDKDLWVVVEKGSVCTSRDCTYR-DAARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKSAPYKRTT-------PEDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTH-------AWPSIARYFPTKTG--------IQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPVFSSPSTGPRWAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRFNLLVKRRQVA 602          
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 3.890e-49
Identity = 106/276 (38.41%), Postives = 146/276 (52.90%), Query Frame = 1
Query:    1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQA-----WSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNR 813
            +D  LWV V  G  C +  CT R  A R+A+RRHYH+ C H H  G K GM FHHHQLEK++KHQR H R A  ++  ++T        P+  +A+  AG+E +    W+   T +L  LV       +        AW ++A     + G         QC+L WR  +N    + G GTW   ED+RL  L   F+       W+ +A  MPGR  KQCRER+NN V+P + +   WT EEDAL+  +  +  ++FA  AR +PG  Y+DVKNR
Sbjct:  210 LDKDLWVVVEKGSVCTSRDCTYR-DAARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKSAPYKRTT-------PEDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTH-------AWPSIARYFPTKTG--------IQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPVFSSPSTGPRWAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 462          
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.450e-48
Identity = 111/298 (37.25%), Postives = 152/298 (51.01%), Query Frame = 1
Query:    1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHAR-RAAAASAEEQTWNSPSAVPP---------------DVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSA 846
            +DP LW  V     C A QC  R+     A RRHYHA C+H H  G + GMRF HHQLEK++KHQR H   + ++  +      SP+ V                 + T A+  A +E H  + W+   T RLR LV+    +           W  +A  +  +        +A  CML WR  VN    V G GTW   ED+RL+ LV      WS +A+++PGR  KQCRER+ N ++P+L +  PWT +E+ALL  +     +++A+  R L G SYNDVKNRFN +QR    A
Sbjct:  859 LDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQTSSIGSSAAKPRSPTTVATAPRNKRVAAASNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPK-----------WSNIADKMPGK--------TATACMLHWRVGVNPNHMVKGSGTWTAEEDERLSKLVEVVGMKWSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRA 1137          
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A6H5JLY2_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 5.330e-47
Identity = 107/277 (38.63%), Postives = 141/277 (50.90%), Query Frame = 1
Query:    1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQR 831
            +D  LW+    G+ C + +C  +   T +++RRHYHA CDHRH  G K GM FHHHQLEKI+KHQR H R     +  E   N  +  P              +  + W+      L  LV          G  G   W  ++A +  +        +  QCML WR  +N  ATV G GTW   ED+R+  LV  F Q WS+VA +MPGR  KQCRER+ N ++P  LR G W+ EED  L  +  Q    FA  A  + G SYNDVKNR++ + R
Sbjct:  552 LDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTLHKKTPAEAVLNEGNVEP--------------YLPQEWTEQEASVLAHLV----------GMYGPTNWGIISAGVGTK--------TETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPE-LRRGAWSREEDEKLLQLRGQQNKSFAKIAEQIDGRSYNDVKNRWSQISR 795          
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: D8LCS2_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 7.660e-44
Identity = 108/294 (36.73%), Postives = 142/294 (48.30%), Query Frame = 1
Query:    1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPE-----------------EDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQR 831
            +D  LW+    G+ C + +C  +   T +++RRHYHA CDHRH  G K GM FHHHQLEKI+KHQR H R     +  E   N  +  P              +  + W+      L  LV          G  G   W  ++A +A +        +  QCML WR  +N  ATV G GTW   ED+R+  LV  F Q WS+VA +MPGR  KQCRER+ N ++P  LR G W+ E                 ED  L  +  Q    FA  A  + G SYNDVKNR++ + R
Sbjct:  566 LDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTLHKKTPAEAVLNEGNVEP--------------YLPQEWTEQEASVLAHLV----------GMYGPTNWGIISAGVATK--------TETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPE-LRRGAWSREARNKKQRVLCAYVGKGLEDEKLLQLRGQQNKSFAKIAEQIDGRSYNDVKNRWSQISR 826          
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A835YVJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ8_9STRA)

HSP 1 Score: 160 bits (406), Expect = 5.540e-42
Identity = 106/263 (40.30%), Postives = 125/263 (47.53%), Query Frame = 1
Query:    7 PALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPA-LLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHS 792
            P   ++      C+A QCTLR    R+A RRHYHA C+HRH AG KAGM  HHHQLEK+RKHQ  H  +        +T  S      D   ALA AG E +    WSAAAT  L  LV                 W  VA  L A  G      SA QC+L WR  VN+G TV     W   ED RL  +V+     W +VAR +PGR+ KQCRE + NVV P    R  P  P + A L     Q   R   +    P HS
Sbjct:  127 PPTHLQQRQARHCDAEQCTLREETRRIARRRHYHALCEHRHSAGPKAGMPLHHHQLEKVRKHQSTHEVQCC------RTLASALQTDADTAAALARAGAEAYRPGAWSAAATQALAALVXXXXXXXX-------AQWTDVARQLTAATG---LRASAQQCLLHWRIAVNKGETVAASRAWSVTEDDRLVAVVSVMGVRWPAVARLLPGRDLKQCREHYTNVVLPGGKPRPWPTAPPQSATLSGGAAQPQPRQLLSGFRHPSHS 373          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CC17_9STRA9.590e-204100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835ZA42_9STRA1.740e-8257.50Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQW6_9STRA1.080e-5946.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FJZ9_ECTSI1.210e-5036.96Putative c-myb-like transcription factor n=1 Tax=E... [more]
D8LH85_ECTSI1.560e-5038.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ17_9PHAE3.890e-4938.41MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JMK3_9PHAE1.450e-4837.25MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A6H5JLY2_9PHAE5.330e-4738.63MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LCS2_ECTSI7.660e-4436.73Myb-like DNA-binding domain containing protein n=1... [more]
A0A835YVJ8_9STRA5.540e-4240.30Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_48contigContig_48:361378..362902 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|154799|gw1.48.119.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko05166,map04151,map05166
KEGG koko:K09420
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue2.55e-51
Seed ortholog2880.D8LH85
Hectar predicted targeting categoryother localisation
TranscriptId155121
TrackFilteredModels1
ProteinId154799
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154799gene_12600Tribonema minus UTEX_B_3156 geneContig_48 361378..362902 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|154799Trimin1|154799|gw1.48.119.1Tribonema minus UTEX_B_3156 polypeptideContig_48 361378..362902 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12600_2exon_12600_2Tribonema minus UTEX_B_3156 exonContig_48 361378..361732 -
exon_12600_1exon_12600_1Tribonema minus UTEX_B_3156 exonContig_48 362370..362902 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12600CDS_12600Tribonema minus UTEX_B_3156 CDSContig_48 362370..362902 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12600 ID=mRNA_12600|Name=jgi.p|Trimin1|154799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=888bp|location=Sequence derived from alignment at Contig_48:361378..362902- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCGACCCCGCGCTGTGGGTGCGCGTGAACCTCGGCGACAGGTGCGAGGC
GGCGCAGTGCACGCTGCGCGCGCCGGCGACGCGCCTCGCGACGCGGCGCC
ACTACCACGCGAAGTGCGACCACCGCCACGGCGCCGGCGCGAAGGCCGGC
ATGCGCTTCCACCACCACCAGCTCGAGAAGATCCGCAAGCACCAGCGCGT
GCACGCGCGCCGCGCCGCCGCGGCGAGCGCCGAGGAGCAGACCTGGAACA
GTCCCAGCGCCGTTCCGCCGGACGTCACGGAGGCGCTCGCGGCCGCGGGG
CTCGAGCTTCACGACGTGCGCGTGTGGAGCGCTGCCGCGACAGACAGGCT
GCGCGGGCTGGTGGAGGCGCAGCAGCAGCGGACGAGCGGCGGCGGCGCGG
CCGGGCGCGTGGCGTGGGAGGCGGTGGCGGCGGCGCTAGCGGCGGAGCGC
GGTGAGGGGGAGGCGGAGCTGTCGGCGGCGCAGTGCATGCTGCAGTGGCG
CGCCGTGGTGAATCAGGGCGCGACGGTCACAGGCGTCGGCACATGGTGCG
AGCCCGAAGACAAGCGCCTGGCGGTGCTCGTCGCACACTTCAACCAGGCC
TGGTCCAGCGTCGCGCGCTACATGCCCGGGCGCGAGCCCAAGCAGTGCCG
CGAGCGCTTCAACAATGTCGTCAACCCCGCGCTCCTGCGCTCCGGTCCAT
GGACCCCAGAAGAGGATGCGCTGCTCGAGAGCATGATGCAGCAGACGGGG
CACCGCTTCGCCGACGCCGCGCGCTGCCTCCCCGGCCACTCGTACAACGA
CGTCAAGAACCGCTTCAACACGCTGCAGCGCGCCAAGAACAGCGCCGCCG
CCGCCGCCGCCGCTGCCGCCGGCGGCGCCGCGCCTGCG
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protein sequence of jgi.p|Trimin1|154799

>Trimin1|154799|gw1.48.119.1 ID=Trimin1|154799|gw1.48.119.1|Name=jgi.p|Trimin1|154799|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=296bp
IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAG
MRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAG
LELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAER
GEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQA
WSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTG
HRFADAARCLPGHSYNDVKNRFNTLQRAKNSAAAAAAAAAGGAAPA
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mRNA from alignment at Contig_48:361378..362902-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12600 ID=mRNA_12600|Name=jgi.p|Trimin1|154799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1525bp|location=Sequence derived from alignment at Contig_48:361378..362902- (Tribonema minus UTEX_B_3156 )
ATCGACCCCGCGCTGTGGGTGCGCGTGAACCTCGGCGACAGGTGCGAGGC GGCGCAGTGCACGCTGCGCGCGCCGGCGACGCGCCTCGCGACGCGGCGCC ACTACCACGCGAAGTGCGACCACCGCCACGGCGCCGGCGCGAAGGCCGGC ATGCGCTTCCACCACCACCAGCTCGAGAAGATCCGCAAGCACCAGCGCGT GCACGCGCGCCGCGCCGCCGCGGCGAGCGCCGAGGAGCAGACCTGGAACA GTCCCAGCGCCGTTCCGCCGGACGTCACGGAGGCGCTCGCGGCCGCGGGG CTCGAGCTTCACGACGTGCGCGTGTGGAGCGCTGCCGCGACAGACAGGCT GCGCGGGCTGGTGGAGGCGCAGCAGCAGCGGACGAGCGGCGGCGGCGCGG CCGGGCGCGTGGCGTGGGAGGCGGTGGCGGCGGCGCTAGCGGCGGAGCGC GGTGAGGGGGAGGCGGAGCTGTCGGCGGCGCAGTGCATGCTGCAGTGGCG CGCCGTGGTGAATCAGGGCGCGACGGTCACAGGGTAAGAGAGCGTCACAG ATGAAGTTTGTGTGTGAAGGTGTGCACGGTGAGGGTGGGTAGCAGTTGAA GTTTTGCGCCTCAGGTGCATGCAGTCACCAGTGACTATTTTAAGGGTGTG CTGTTAAGCTGTTCCTGCGGCAGCAGCACAGACGTGCTGCCGCTGGTCAC AGTGCAAGTTCAAGTTCTTGAAGTTCATCATGTAAGGTCAGCATGAAGGT TCTGCTTTGTGGTGGGTGAGCAAGTAAACGTTCATATGCGAAATACCCCT CACTTCCTCTAAGTTGTACATGCACGTGGCAGAACATAGCTCAGAGGCAT CACTCTCGCGCTGTGTCTACACAATGAACTCTGTTGAGAAGGAGGAAGAT GCCTTTCGGCTGTAGGTGCGCACATTTCAAGGGCTGCATCTCATGGTTTA CGTGCTGAGCATCATCCTTTGTGCAGATGTCCACGCTGGTCACGACATAT GCCGCTGGCGCTTCGCGGTCAAGGCATCCCCTTGTGCACCCATCACTTCA GCAGCCGCACTGACAGCATAAACATCACGGCGTATTCAGCATCCACACGC ACACAGACGCTGTTGCTGACACACACACGCCCCCCCTGCACCCCCGCAAC CCTCCCCCCCAACACGGCAGCGTCGGCACATGGTGCGAGCCCGAAGACAA GCGCCTGGCGGTGCTCGTCGCACACTTCAACCAGGCCTGGTCCAGCGTCG CGCGCTACATGCCCGGGCGCGAGCCCAAGCAGTGCCGCGAGCGCTTCAAC AATGTCGTCAACCCCGCGCTCCTGCGCTCCGGTCCATGGACCCCAGAAGA GGATGCGCTGCTCGAGAGCATGATGCAGCAGACGGGGCACCGCTTCGCCG ACGCCGCGCGCTGCCTCCCCGGCCACTCGTACAACGACGTCAAGAACCGC TTCAACACGCTGCAGCGCGCCAAGAACAGCGCCGCCGCCGCCGCCGCCGC TGCCGCCGGCGGCGCCGCGCCTGCG
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Coding sequence (CDS) from alignment at Contig_48:361378..362902-

>mRNA_12600 ID=mRNA_12600|Name=jgi.p|Trimin1|154799|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=888bp|location=Sequence derived from alignment at Contig_48:361378..362902- (Tribonema minus UTEX_B_3156 )
ATCGACCCCGCGCTGTGGGTGCGCGTGAACCTCGGCGACAGGTGCGAGGC
GGCGCAGTGCACGCTGCGCGCGCCGGCGACGCGCCTCGCGACGCGGCGCC
ACTACCACGCGAAGTGCGACCACCGCCACGGCGCCGGCGCGAAGGCCGGC
ATGCGCTTCCACCACCACCAGCTCGAGAAGATCCGCAAGCACCAGCGCGT
GCACGCGCGCCGCGCCGCCGCGGCGAGCGCCGAGGAGCAGACCTGGAACA
GTCCCAGCGCCGTTCCGCCGGACGTCACGGAGGCGCTCGCGGCCGCGGGG
CTCGAGCTTCACGACGTGCGCGTGTGGAGCGCTGCCGCGACAGACAGGCT
GCGCGGGCTGGTGGAGGCGCAGCAGCAGCGGACGAGCGGCGGCGGCGCGG
CCGGGCGCGTGGCGTGGGAGGCGGTGGCGGCGGCGCTAGCGGCGGAGCGC
GGTGAGGGGGAGGCGGAGCTGTCGGCGGCGCAGTGCATGCTGCAGTGGCG
CGCCGTGGTGAATCAGGGCGCGACGGTCACAGGCGTCGGCACATGGTGCG
AGCCCGAAGACAAGCGCCTGGCGGTGCTCGTCGCACACTTCAACCAGGCC
TGGTCCAGCGTCGCGCGCTACATGCCCGGGCGCGAGCCCAAGCAGTGCCG
CGAGCGCTTCAACAATGTCGTCAACCCCGCGCTCCTGCGCTCCGGTCCAT
GGACCCCAGAAGAGGATGCGCTGCTCGAGAGCATGATGCAGCAGACGGGG
CACCGCTTCGCCGACGCCGCGCGCTGCCTCCCCGGCCACTCGTACAACGA
CGTCAAGAACCGCTTCAACACGCTGCAGCGCGCCAAGAACAGCGCCGCCG
CCGCCGCCGCCGCTGCCGCCGGCGGCGCCGCGCCTGCG
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