mRNA_12600 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A836CC17_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC17_9STRA) HSP 1 Score: 566 bits (1460), Expect = 9.590e-204 Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 1
Query: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSAXXXXXXXXXXAAPA 888
IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSAXXXXXXXXXXAAPA
Sbjct: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSAXXXXXXXXXXAAPA 296
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A835ZA42_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA42_9STRA) HSP 1 Score: 257 bits (657), Expect = 1.740e-82 Identity = 138/240 (57.50%), Postives = 160/240 (66.67%), Query Frame = 1
Query: 40 RCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAA-SAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHR 756
RCEA CT+RA TRLATRRHYHA C H H +GAKAGMRFHHHQLEKIRKHQR H R + A +A P +P +V EAL G EL+D +WSA A RL LVE Q R GRVAW+ VAAA+ A LSA+QCML WR VVN GA + GVGTWC ED RL L AHF Q+W+++AR+MPGR PKQCRERFNNV++PA + PW P ED LL ++ QTG R
Sbjct: 3 RCEAQDCTMRAAGTRLATRRHYHATCGHVHASGAKAGMRFHHHQLEKIRKHQRAHKRSSVIALTAPAPDSPYPGGLPVEVAEALLRGGAELYDPALWSADAGARLGALVEQQHARRG----VGRVAWDKVAAAMRAPA------LSASQCMLHWRDVVNGGAIIMGVGTWCNAEDTRLRALTAHFRQSWATIARFMPGRGPKQCRERFNNVIDPASHKRAPWKPAEDELLMAVCAQTGER 232
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A835YQW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQW6_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.080e-59 Identity = 122/262 (46.56%), Postives = 148/262 (56.49%), Query Frame = 1
Query: 22 RVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVK 807
RV +C A CTLR A+ +A RRHYHA+C+HRH G K GMRFHHHQLEKIRKHQ HA A A +P P + E L + G+ELH+ W AT L LV R S AW ALAA +S QC+L WR V+N G VTGV TW + ED RL LV F WS+VA+ +PGREPKQCRERF NVV+P+ R WTPEED LL + + ++FA A+ SYN+V+
Sbjct: 11 RVLPSPQCHAEMCTLRDDASLVARRRHYHARCEHRHSTGPKTGMRFHHHQLEKIRKHQSAHA-----AEASRDRGGAPHLDPSMMAE-LNSHGIELHNPEAWPPEATRHLDTLVRGPVGRPSS-------AWGEFPRALAAALPG--FTVSPQQCLLHWRLVINNGGAVTGVRTWSDVEDARLNSLVNMFGTKWSAVAQLLPGREPKQCRERFLNVVDPSKTRKA-WTPEEDELLLRVHDRVRNQFARTAKYFSDRSYNEVR 256
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: D7FJZ9_ECTSI (Putative c-myb-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ9_ECTSI) HSP 1 Score: 182 bits (463), Expect = 1.210e-50 Identity = 112/303 (36.96%), Postives = 156/303 (51.49%), Query Frame = 1
Query: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRA---------AAASAEEQTWNSPSAVP------------PDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSA 846
+DP LW V C A QC R+ A RRHYHA C+H H G + GMRF HHQLEK++KHQR H A +++A+ ++ + +A P + T A+ A +E H + W+ T RLR LV+ + W +A + + +A CML WR VN V G GTW ED+RL+ LV WS +AR++PGR KQCRER+ N ++P+L + PWT +E+ALL + +++A+ R L G SYNDV+NRFN +QR A
Sbjct: 116 LDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQVSAKQNTQRSSIGSSAAKPRSPTTVAAAPRNKRVAAATSGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPK-----------WSNIADKMPGK--------TATACMLHWRVGVNPDHMVKGSGTWTAEEDERLSKLVEVVGMKWSDLARHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVQNRFNLIQRRNKRA 399
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: D8LH85_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH85_ECTSI) HSP 1 Score: 186 bits (472), Expect = 1.560e-50 Identity = 110/287 (38.33%), Postives = 152/287 (52.96%), Query Frame = 1
Query: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQA-----WSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSA 846
+D LWV V G C + CT R A R+A+RRHYH+ C H H G K GM FHHHQLEK++KHQR H R A ++ ++T P+ +A+ AG+E + W+ T +L LV + AW ++A + G QC+L WR +N + G GTW ED+RL L F+ W+ +A MPGR KQCRER+NN V+P + + WT EEDAL+ + + ++FA AR +PG Y+DVKNRFN L + + A
Sbjct: 339 LDKDLWVVVEKGSVCTSRDCTYR-DAARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKSAPYKRTT-------PEDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTH-------AWPSIARYFPTKTG--------IQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPVFSSPSTGPRWAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNRFNLLVKRRQVA 602
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A6H5KQ17_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ17_9PHAE) HSP 1 Score: 179 bits (453), Expect = 3.890e-49 Identity = 106/276 (38.41%), Postives = 146/276 (52.90%), Query Frame = 1
Query: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQA-----WSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNR 813
+D LWV V G C + CT R A R+A+RRHYH+ C H H G K GM FHHHQLEK++KHQR H R A ++ ++T P+ +A+ AG+E + W+ T +L LV + AW ++A + G QC+L WR +N + G GTW ED+RL L F+ W+ +A MPGR KQCRER+NN V+P + + WT EEDAL+ + + ++FA AR +PG Y+DVKNR
Sbjct: 210 LDKDLWVVVEKGSVCTSRDCTYR-DAARIASRRHYHSNCTHTHNGGEKKGMAFHHHQLEKVQKHQRSHKREATKSAPYKRTT-------PEDHQAMEGAGVEGYRPTDWNQEETRKLDELVNQLVAPVTH-------AWPSIARYFPTKTG--------IQCLLHWRFTLNDNGIIRGNGTWGAEEDERLRKLAPVFSSPSTGPRWAKIAEVMPGRTAKQCRERYNNHVDPGIKKDKIWTAEEDALVMQLHAEHHNQFAKIARNIPGRCYDDVKNR 462
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A6H5JMK3_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK3_9PHAE) HSP 1 Score: 183 bits (465), Expect = 1.450e-48 Identity = 111/298 (37.25%), Postives = 152/298 (51.01%), Query Frame = 1
Query: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHAR-RAAAASAEEQTWNSPSAVPP---------------DVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQRAKNSA 846
+DP LW V C A QC R+ A RRHYHA C+H H G + GMRF HHQLEK++KHQR H + ++ + SP+ V + T A+ A +E H + W+ T RLR LV+ + W +A + + +A CML WR VN V G GTW ED+RL+ LV WS +A+++PGR KQCRER+ N ++P+L + PWT +E+ALL + +++A+ R L G SYNDVKNRFN +QR A
Sbjct: 859 LDPKLWTVVERRAVCTAKQCAYRSEEDHRARRRHYHALCNHVHQNGERKGMRFQHHQLEKVQKHQRAHQNTQTSSIGSSAAKPRSPTTVATAPRNKRVAAASNGQKEQTRAIKDANVEAHSPKDWTPELTKRLRDLVDELGPK-----------WSNIADKMPGK--------TATACMLHWRVGVNPNHMVKGSGTWTAEEDERLSKLVEVVGMKWSDLAKHIPGRIAKQCRERYLNHLDPSLRKDMPWTEDEEALLMRLCFAKQNQWAEICRQLHGRSYNDVKNRFNLIQRRNKRA 1137
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A6H5JLY2_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLY2_9PHAE) HSP 1 Score: 179 bits (453), Expect = 5.330e-47 Identity = 107/277 (38.63%), Postives = 141/277 (50.90%), Query Frame = 1
Query: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQR 831
+D LW+ G+ C + +C + T +++RRHYHA CDHRH G K GM FHHHQLEKI+KHQR H R + E N + P + + W+ L LV G G W ++A + + + QCML WR +N ATV G GTW ED+R+ LV F Q WS+VA +MPGR KQCRER+ N ++P LR G W+ EED L + Q FA A + G SYNDVKNR++ + R
Sbjct: 552 LDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTLHKKTPAEAVLNEGNVEP--------------YLPQEWTEQEASVLAHLV----------GMYGPTNWGIISAGVGTK--------TETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPE-LRRGAWSREEDEKLLQLRGQQNKSFAKIAEQIDGRSYNDVKNRWSQISR 795
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: D8LCS2_ECTSI (Myb-like DNA-binding domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS2_ECTSI) HSP 1 Score: 169 bits (429), Expect = 7.660e-44 Identity = 108/294 (36.73%), Postives = 142/294 (48.30%), Query Frame = 1
Query: 1 IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPALLRSGPWTPE-----------------EDALLESMMQQTGHRFADAARCLPGHSYNDVKNRFNTLQR 831
+D LW+ G+ C + +C + T +++RRHYHA CDHRH G K GM FHHHQLEKI+KHQR H R + E N + P + + W+ L LV G G W ++A +A + + QCML WR +N ATV G GTW ED+R+ LV F Q WS+VA +MPGR KQCRER+ N ++P LR G W+ E ED L + Q FA A + G SYNDVKNR++ + R
Sbjct: 566 LDADLWIVRERGEHCSSNECIYKDKTTGISSRRHYHATCDHRHKGGPKGGMIFHHHQLEKIQKHQRAHIRTLHKKTPAEAVLNEGNVEP--------------YLPQEWTEQEASVLAHLV----------GMYGPTNWGIISAGVATK--------TETQCMLHWRFALNGNATVKGTGTWQSVEDERMLSLVQIFGQRWSTVAEHMPGRLAKQCRERYLNNLDPE-LRRGAWSREARNKKQRVLCAYVGKGLEDEKLLQLRGQQNKSFAKIAEQIDGRSYNDVKNRWSQISR 826
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Match: A0A835YVJ8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVJ8_9STRA) HSP 1 Score: 160 bits (406), Expect = 5.540e-42 Identity = 106/263 (40.30%), Postives = 125/263 (47.53%), Query Frame = 1
Query: 7 PALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGMRFHHHQLEKIRKHQRVHARRAAAASAEEQTWNSPSAVPPDVTEALAAAGLELHDVRVWSAAATDRLRGLVEAQQQRTSGGGAAGRVAWEAVAAALAAERGEGEAELSAAQCMLQWRAVVNQGATVTGVGTWCEPEDKRLAVLVAHFNQAWSSVARYMPGREPKQCRERFNNVVNPA-LLRSGPWTPEEDALLESMMQQTGHRFADAARCLPGHS 792
P ++ C+A QCTLR R+A RRHYHA C+HRH AG KAGM HHHQLEK+RKHQ H + +T S D ALA AG E + WSAAAT L LV W VA L A G SA QC+L WR VN+G TV W ED RL +V+ W +VAR +PGR+ KQCRE + NVV P R P P + A L Q R + P HS
Sbjct: 127 PPTHLQQRQARHCDAEQCTLREETRRIARRRHYHALCEHRHSAGPKAGMPLHHHQLEKVRKHQSTHEVQCC------RTLASALQTDADTAAALARAGAEAYRPGAWSAAATQALAALVXXXXXXXX-------AQWTDVARQLTAATG---LRASAQQCLLHWRIAVNKGETVAASRAWSVTEDDRLVAVVSVMGVRWPAVARLLPGRDLKQCREHYTNVVLPGGKPRPWPTAPPQSATLSGGAAQPQPRQLLSGFRHPSHS 373 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154799 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12600 ID=mRNA_12600|Name=jgi.p|Trimin1|154799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=888bp|location=Sequence derived from alignment at Contig_48:361378..362902- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCGACCCCGCGCTGTGGGTGCGCGTGAACCTCGGCGACAGGTGCGAGGCback to top protein sequence of jgi.p|Trimin1|154799 >Trimin1|154799|gw1.48.119.1 ID=Trimin1|154799|gw1.48.119.1|Name=jgi.p|Trimin1|154799|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=296bp IDPALWVRVNLGDRCEAAQCTLRAPATRLATRRHYHAKCDHRHGAGAKAGback to top mRNA from alignment at Contig_48:361378..362902- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12600 ID=mRNA_12600|Name=jgi.p|Trimin1|154799|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1525bp|location=Sequence derived from alignment at Contig_48:361378..362902- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_48:361378..362902- >mRNA_12600 ID=mRNA_12600|Name=jgi.p|Trimin1|154799|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=888bp|location=Sequence derived from alignment at Contig_48:361378..362902- (Tribonema minus UTEX_B_3156 )back to top |