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Homology
BLAST of jgi.p|Trimin1|347995 vs. uniprot
Match: A0A836CHY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHY3_9STRA) HSP 1 Score: 620 bits (1599), Expect = 7.550e-223 Identity = 358/358 (100.00%), Postives = 358/358 (100.00%), Query Frame = 1
Query: 1 MDPAGAADAAAQAAKQLEKCVEARAHLADAQSTASTSAPVWTLLPPLVAGLLSFPQRNLADGKQGGNGGNGTRVKASAKLALRAARWCEATVAEAVQLDLALGLGARAARHVAVPALDALLRSGGVSAARREGVALERLRLACHEAAALSARGDGGGACVRAAXXAGTAQLLRRRVHDAXXXXXXXXXXXXXXKSAWHHVSAIIHPGNSASASSESTAAGGSAHGPAGRSLVLWSTLAVRTPAGCGPGQAAAIALAAALSAAAAPITCGMCALANNTASGGEDRTSSGPAVKLLSWLAAPDCIKARTTMEDSLSRLLKALKYARRDVASGGARPEVAATVTALLSSQEGPGTTCLRVF 1074
MDPAGAADAAAQAAKQLEKCVEARAHLADAQSTASTSAPVWTLLPPLVAGLLSFPQRNLADGKQGGNGGNGTRVKASAKLALRAARWCEATVAEAVQLDLALGLGARAARHVAVPALDALLRSGGVSAARREGVALERLRLACHEAAALSARGDGGGACVRAAXXAGTAQLLRRRVHDAXXXXXXXXXXXXXXKSAWHHVSAIIHPGNSASASSESTAAGGSAHGPAGRSLVLWSTLAVRTPAGCGPGQAAAIALAAALSAAAAPITCGMCALANNTASGGEDRTSSGPAVKLLSWLAAPDCIKARTTMEDSLSRLLKALKYARRDVASGGARPEVAATVTALLSSQEGPGTTCLRVF
Sbjct: 1 MDPAGAADAAAQAAKQLEKCVEARAHLADAQSTASTSAPVWTLLPPLVAGLLSFPQRNLADGKQGGNGGNGTRVKASAKLALRAARWCEATVAEAVQLDLALGLGARAARHVAVPALDALLRSGGVSAARREGVALERLRLACHEAAALSARGDGGGACVRAAXXAGTAQLLRRRVHDAXXXXXXXXXXXXXXKSAWHHVSAIIHPGNSASASSESTAAGGSAHGPAGRSLVLWSTLAVRTPAGCGPGQAAAIALAAALSAAAAPITCGMCALANNTASGGEDRTSSGPAVKLLSWLAAPDCIKARTTMEDSLSRLLKALKYARRDVASGGARPEVAATVTALLSSQEGPGTTCLRVF 358
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|347995|estExt_Genemark1.C_Ctg_180016 |
| Hectar predicted targeting category | other localisation |
| TranscriptId | 348317 |
| Track | FilteredModels1 |
| ProteinId | 347995 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_1253 ID=mRNA_1253|Name=jgi.p|Trimin1|347995|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1075bp|location=Sequence derived from alignment at Contig_18:140485..146324- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGGATCCTGCCGGTGCAGCTGATGCAGCGGCACAGGCCGCCAAGCAGCT TGAGAAATGCGTCGAAGCACGGGCGCACTTGGCGGATGCGCAGAGCACCG CATCTACGTCAGCGCCAGTGTGGACGCTGCTGCCGCCCCTAGTGGCTGGC CTGCTGTCATTCCCGCAGAGGAACCTGGCTGACGGCAAGCAGGGCGGCAA TGGAGGCAACGGCACGCGCGTCAAGGCCTCAGCCAAGCTGGCGTTGCGCG CCGCGCGCTGGTGCGAGGCCACCGTCGCCGAGGCCGTGCAGCTCGACCTA GCACTAGGGCTGGGGGCGCGCGCGGCGCGCCACGTCGCCGTCCCCGCCCT CGACGCGCTGCTGCGGAGCGGCGGCGTGAGCGCCGCGCGGCGCGAGGGCG TCGCGCTGGAGCGGCTGCGACTCGCGTGCCACGAGGCGGCGGCGCTGAGC GCGCGCGGCGACGGCGGCGGCGCGTGCGTGCGTGCGGCGGCGGCAGCAGG CACCGCGCAGCTGTTGCGGCGCCGTGTGCACGACGCGGACGGTGGCAGCG CTGCAGTACGCGGGGAGGCTGGCGGCGGGAAGAGTGCATGGCACCACGTC AGCGCCATCATTCACCCCGGCAATAGCGCTAGCGCCAGCTCTGAGAGCAC TGCTGCTGGTGGCAGCGCTCACGGGCCGGCTGGCCGGTCGCTCGTGCTGT GGAGCACGCTGGCGGTGCGCACGCCAGCCGGCTGTGGGCCCGGCCAGGCT GCGGCGATCGCGCTCGCGGCAGCGTTAAGTGCGGCAGCTGCGCCCATCAC CTGCGGCATGTGCGCTCTAGCCAACAACACTGCCTCTGGTGGTGAGGATC GCACAAGCAGCGGACCTGCGGTGAAGCTCCTGTCCTGGCTCGCTGCACCA GATTGCATCAAGGCCCGCACCACTATGGAGGACTCATTGTCGCGCCTGCT CAAAGCACTCAAGTACGCCCGACGTGATGTTGCTTCCGGCGGTGCAAGGC CCGAAGTCGCTGCCACAGTCACAGCGCTGCTCAGTTCACAAGAGGGCCCT GGCACCACCTGCTTGCGAGTGTTCG back to topprotein sequence of jgi.p|Trimin1|347995 >Trimin1|347995|estExt_Genemark1.C_Ctg_180016 ID=Trimin1|347995|estExt_Genemark1.C_Ctg_180016|Name=jgi.p|Trimin1|347995|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=358bp
MDPAGAADAAAQAAKQLEKCVEARAHLADAQSTASTSAPVWTLLPPLVAG LLSFPQRNLADGKQGGNGGNGTRVKASAKLALRAARWCEATVAEAVQLDL ALGLGARAARHVAVPALDALLRSGGVSAARREGVALERLRLACHEAAALS ARGDGGGACVRAAAAAGTAQLLRRRVHDADGGSAAVRGEAGGGKSAWHHV SAIIHPGNSASASSESTAAGGSAHGPAGRSLVLWSTLAVRTPAGCGPGQA AAIALAAALSAAAAPITCGMCALANNTASGGEDRTSSGPAVKLLSWLAAP DCIKARTTMEDSLSRLLKALKYARRDVASGGARPEVAATVTALLSSQEGP GTTCLRVF back to topmRNA from alignment at Contig_18:140485..146324- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1253 ID=mRNA_1253|Name=jgi.p|Trimin1|347995|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5840bp|location=Sequence derived from alignment at Contig_18:140485..146324- (Tribonema minus UTEX_B_3156 ) ATGGATCCTGCCGGTGCAGCTGATGCAGCGGCACAGGCCGCCAAGCAGCT
TGAGAAATGCGTCGAAGCACGGGCGCACTTGGCGGTCTGGCGTAAGAAGG
CGGATGCTGGTGCGGGCAACAGCCAAGATGTTGCACACGGCAACATTGCA
TGTGTCGTTGAAAACCTTGAGGTGCAGCAGACGCGATTTCTCCAAGAGCG
AGGCCCTGACATTGCATCTGCAATGATTACACTGGCACAGGTAAAGGATG
CAAGTCTTAGCGAGCTCGCGAACCCAGTGCTGGATATGATTTTCAGTCTG
ACGCTTGCAATCGCTTGCAATCATTTTGTACCACCCCACACTCTTTCAGC
AGGCACCGAAATGGCGTGAAATGGCGGCAATGATGCCACATTTGCGAGCT
ACGCTGTTGGCGTAACCTACACCATGTGTGACAGGCACTGGAACGGTCTG
ACACAACCCAGATGGGTGTTGTGACTTGGTGACAAGATTGTTTGTTGATG
ATTGCGCTGGTCATGACGCTCTGTGCTGAGCACGCATGTACTTGTCCCAC
ATGGTATTTGAAAGTTTCCTACAGCTATCCGGCGCTCTGCACAACCGCCC
CATTGCAAAGCACACAACATATGCGACGGTTATTGGTGGAAGGCACTTGC
GGCTAACCATCCCTTGTCACCTAGAGCTCTACGATCTTTTGATTCAATTT
CATATGTTACCGTATGTTTCTGATCCCCTCACACGGTCATTTGCTTCTCA
TGTTTCTACCCCCTCCGCTTTCAGGATGCGCAGAGCACCGCATCTACGTC
AGCGCCAGTGTGGACGCTGCTGCCGCCCCTAGTGGCTGGCCTGCTGTCAT
TCCCGCAGGTGCGAGCAGGGCCTACGGGGAAGGCATGCCTTGCTGCCGTG
GTTGATCTGCATGGTGCTGCGCAGAGGAACCTGGCTGACGGCAAGCAGGG
CGGCAATGGAGGCAACGGTGAGCTAGGAACTATCATTGTTGCCAACAATA
TCGGTGGGTAAGGCTCAAGTGCCTGATTGGCCTCGGAATGGACTGATTCG
TGCTCACTGCTCGAGTTGTCAAGCTGATGATCGATATTGGCTGTCTTGAT
CGCGCTCACAGTGCACGCGGTACTGTGTAATCTGGCCGGAAGTGATGCCC
TAATGATAATTGGCAACCGGTTGCTCAAGTAGCTTTGGCTGTTAGCATTC
TTGCTGCATGCATAGCGATCGCCGCTTGAGTATATTCCAGCTTTCAGTGA
GGAACGCTCAAACATGCGGCTTGTCATCAGCAGTACATGTGTACACCTGG
CAGTGCGCCCCTTCAGAGGACTGCATATCCTTTGCATCTACTGCACTCGC
CCCATCACGTTGTACTGGCACAGAGCCGTGCGGCAGACACTATGTGCTGC
ACGCGGGGCCTGTCTGCCTGTGACTGCAGCGCTCGTCTGCGCGCCTGCCC
GCTGCCCGCCCCACCCCTCACGCTACGCTGTTAACCCCCTTGCGCGCTCA
ACATTCACACCATGCCTGCACACGTCCACACTGTCATACGGCGCCGCTGA
CGATCACACCAGCACTACACGTCGTGCTCACCGCGCAACACAGTGCACTC
AGCATAGACCATCACTGGCGCGCGCCACGCAGCCGCCCACGCCGCCGCGC
CCCCCCGCAGCAGCTCCCCCTGGACTAACTGATCCGCAGCCGTGCAAGCA
GGCACGCGCGTCAAGGCCTCAGCCAAGCTGGCGTTGCGCGCCGCGCGCTG
GTGCGAGGCCACCGTCGCCGAGGCCGTGCAGCTCGACCTAGCACTAGGGC
TGGGGGCGCGCGCGGCGCGCCACGTCGCCGTCCCCGCCCTCGACGCGCTG
CTGCGGAGCGGCGGCGTGAGCGCCGCGCGGCGCGAGGGCGTCGCGCTGGA
GCGGCTGCGACTCGCGTGCCACGAGGCGGCGGCGCTGAGCGCGCGCGGCG
ACGGCGGCGGCGCGTGCGTGCGTGCGGCGGCGGCAGCAGGCACCGCGCAG
CTGTTGCGGCGCCGTGTGCACGACGCGGACGGTGGCAGCGCTGCAGTACG
CGGGGAGGCTGGCGGCGGGAAGAGGTGAGGTTTCTGGCACTGGGTTTGCA
GCATTGTCGGGCCGGCACCGAGCTTACGGTGTTGACTCGTTGTGCGGCAC
GGAGCTGTTTGTTGAAAGAGTGCGCCAAGGGGTACAGTGGCAGAGAGCTG
TCTGGAGCCCCTGCGTGGCACAAGGAGGTTTTTAAGATGCATCACTCCAC
TGCATAGGTCAGCATTGGGCTGCTCGTGTCAGGGCACCACGAGTTGCAGT
GAACTGCTGCGGCGCTTGCGCACGAATGCTGCACCATGCACCTTTTTTGG
TGTGTTATGTGACACCTGCAGGTGCAGAGACCCAGCCGTGCAGCGGACAG
CGGAGGCATACGTGATTGCGCATAGGCTCAAGAGGGGCTGCGTGGATATG
GCGCCCTTGGCAACGTCTGCATCGCCGTCACTGTGCCATGGCCTGGGCGA
CACAGATATGGAGGCGGCGCAGGCTGCGAGGGCGCAATTACACGGGGCAG
GTGTGCGCGTCACTTCGCCATGGCTGAAGATATTACGCAAGTTTGCGACG
TGCTTTTCTCGTGGACCTGATTCATAATCAGACGTTACCGCCTCACGGTC
GAAGATTACTGGCCGTTCAAAGCATGGGTCACTGCCGCAATGGATGGGAC
TGTGCGCAGGCATGCCATTATGACATGCTGAATATGCATGACATCAGGGC
ATATTATTGACGATGAAAGTATACTGGTGCACGGGAAATACGCCTTCATG
CCAGCAGGCCACGTTGATGATGACATAGAGCCGCCATCTGCAGTACTCTC
GGACAATGCAATACACATGTGGGCATCGGCAAGCAGTCAGTGCAGTAAGG
CCAGGGCTGGCAACATGTATGCGCTGGTAGGCCAGCTTTGCCTCAACCCT
GTACGTTGAATGGCAAATACTTGATGTATGAGTATGGAGCATTCCTTACA
CATCGTACGATTCAGGAGCCTTCATCAGTTGCTCTTGCAGGCATAGGTTG
CTTTGAATTGTTCTCTGCAAGTCCTGGCAGGTTCTGGTCTGGCAAAGGGA
AGGCCCCAGCGTGATGGAAGCTATTCCTTGATGCCTTTATGTACATGATC
ACTTCTGTACTCTTGCACACACGCGTGCCGCCGCCAGCCCTCCCTTGCTT
CCTCTGCAGCTAGAAGTACACACAATGGTAACGGCGTGCGTGCCCGCATG
GCCGGCTTTTCAATCTGCACCTCACATGCGTCGCTGCCGGCTCGCATTCA
CTGCAGGCACCGGCGGCCTTGCCCGTGCTGCCGCCGCACTTCAAGCGCCG
TGCGACTGCCCCTGCTGCTGGACGCGCAGTGCATGGCACCACGTCAGCGC
CATCATTCACCCCGGCAATAGCGCTAGCGCCAGCTCTGAGAGCACTGCTG
CTGGTGGCAGCGCTCACGGGCCGGCTGGCCGGTCGCTCGTGCTGTGGAGC
ACGCTGGCGGTGCGCACGCCAGCCGGCTGTGGGCCCGGCCAGGCTGCGGC
GATCGCGCTCGCGGCAGCGTTAAGTGCGGCAGGTGAGGGCACAGGGCAGT
GCTAGTAGTACGTGCAGCGACCCTGGTTATGATGCGTGGAGCAGCGCGGT
CTACGGAGGGTATGTACGAGTATGTGTGCGAAACTGTCGCGCTTAGATGT
CATGCGAGCCCCCAGGGGTGCGCGGCATCAGTTGCCATATGATGTTGATA
ACTGTGAGGCATCAGCGCTCACGCATCGGCTGCACGGCTTTCTCAGGCGG
ACTGCTGGCAAAATTTGGCAGATCCCGCGTCATAATAAGCTTACTTTGCG
GTATGCTTGACAGACGGTGACAGTGATGGCTCATCCATGCAATGGCGGGT
CCCAGAGCATGACACGGGGCAAACCTCGCCTACGCCATTGTTCTGCAGAT
TGTCAGGGTTTGTCCAGCCAGCAAAATCTTCGGCAAATTGTAAGGGCCAG
CGGAAGCTTGCCAGATGCTAAGAACCTCGAATTTTGATGAACCGTCAGCA
ATGTCCTTTGGTGACTTTTGCGTTGTGTAGTGGCGGGCCAGGCCTGGAGG
AGCTTTCAGTGGCACAAGTCAATGCTTCCGCAATGTTCAGAGACGACGCG
CCTTGTGTTTCCGCTGCGCCTGTGTGCGCACACGCTGGCCCTTCCGTGCT
TCCTGCTGTCTCACCTGGCGGCGCGTCAGTGGACCTGTGCGAGGCGACTC
TCTGCATTTGCGCACAGTGTCTGCTTTGCATTGCCGTGAGAGCATATTTT
GGGCGCAAACGTGCTGTTTGGTCTTGAAGTTGCTGTTGACGGCACGTCAC
ATGTGCAGCGGTCCACCGTGTCAGCATGCCGGCATAAACCTGAGTAAATG
CATGACAGCCTCATCATGGCCGCAAAATCATCATCCGCAGCTGGTTACCT
GACGCGGCAATGCCTGGTGCTCCTCAATGCACAGCTGCGCCCATCACCTG
CGGCATGTGCGCTCTAGCCAACAACACTGCCTCTGGTGGTGAGGATCGCA
CAAGCAGCGGACCTGCGGTGAAGCTCCTGTCCTGGCTCGCTGCACCAGAT
TGCATCAAGGTGAGCTGAGAGTGCATCTCTGCCTGAGCACAGCGTTCTCG
TAGTCGGACGTGTCAGCTTTACAAGTCGGCCCTGAGTGAGGTTCAGTACT
GAGCGTGTGTTCCGCTGAGACAAACGTGAGGACTTGCGTGTGCCTATATG
TCTGTGCCTGTCGGTCTTCAGAGGTCACCACACTCACAACCGTGGGCGCA
CGGTAGTGTTGAGTGAACTGCATCCTGAAGCTTGACATGCAACTGCTGCA
GCTCGAGCTATTTCACTGCACCACGCAGGTCTCCCCCGTACATCCTCTGT
AACTGCGTATTGCGTCAATGCGGATATCCTCCAAAGCGACAGATCACGCC
CTGCAAGTGCCACGCAGGCGCTGCCGTGGCTGGTCTACCAGTTGCGCATG
AATCAGGGCACCATGGCTCCAGTCATGATTTCGTACTGCATGGCTGTCAC
GGCACTGGACGTCTGCCTCATCGCGGCCATCACTGTCAATGCCTCAATGA
CTTTACGCACGATATAGACGACACTGCGTCACATCAGTGCCATCCATGAC
CTACAGGAGTGCTTTGTTGTTGTGTATGTATGTATGCTCGTGCACACACA
GGCCCGCACCACTATGGAGGACTCATTGTCGCGCCTGCTCAAAGCACTCA
AGTACGCCCGACGTGATGTTGCTTCCGGCGGTGCAAGGCAAGTGGCGCAG
TCTTACTGGCTGCTCTTCTGCGCGCGTTTTGTCATGACAAATAAGCGACA
GCGCCCTATGCTCAGAGTGATGCAAGAAGGGGCCTGTGTGCCATCATTTG
CTTTGCCGTAGGGCTCTCTTCATTTCTCTAAGTACTGCAAGGTCAAGTAT
GCTTAGACCGTCATGTGAGCAGTGGTAAGATGTTGTGAGCTATCTATCAT
GCTCTGATTCTGGCAGCTCATCATATTGGTGTGGTTTTTGGCCATCATGA
ACTAGTGATCATCTGTAGCTGATGTCACCGGTAGACATAGCGTATTGGGC
GTCAGGCAGGACTCTTTGTGTGGCTTATTCTGGTCACCGATTAGCCAGCT
GCACCTGCCTTGCGTACATGCCATGCTCCTTCAGATTCCTCCTATTTGTA
CCCTGTACGCCAGCTCACTCGTCCATGTCCGATTCCTGGTTGTCCTGCTG
TCAATGCCAGCAGGCCCGAAGTCGCTGCCACAGTCACAGCGCTGCTCAGT
TCACAAGAGGGCCCTGGCACCACCTGCTTGCGAGTGTTCG back to topCoding sequence (CDS) from alignment at Contig_18:140485..146324- >mRNA_1253 ID=mRNA_1253|Name=jgi.p|Trimin1|347995|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1074bp|location=Sequence derived from alignment at Contig_18:140485..146324- (Tribonema minus UTEX_B_3156 ) ATGGATCCTGCCGGTGCAGCTGATGCAGCGGCACAGGCCGCCAAGCAGCT TGAGAAATGCGTCGAAGCACGGGCGCACTTGGCGGATGCGCAGAGCACCG CATCTACGTCAGCGCCAGTGTGGACGCTGCTGCCGCCCCTAGTGGCTGGC CTGCTGTCATTCCCGCAGAGGAACCTGGCTGACGGCAAGCAGGGCGGCAA TGGAGGCAACGGCACGCGCGTCAAGGCCTCAGCCAAGCTGGCGTTGCGCG CCGCGCGCTGGTGCGAGGCCACCGTCGCCGAGGCCGTGCAGCTCGACCTA GCACTAGGGCTGGGGGCGCGCGCGGCGCGCCACGTCGCCGTCCCCGCCCT CGACGCGCTGCTGCGGAGCGGCGGCGTGAGCGCCGCGCGGCGCGAGGGCG TCGCGCTGGAGCGGCTGCGACTCGCGTGCCACGAGGCGGCGGCGCTGAGC GCGCGCGGCGACGGCGGCGGCGCGTGCGTGCGTGCGGCGGCGGCAGCAGG CACCGCGCAGCTGTTGCGGCGCCGTGTGCACGACGCGGACGGTGGCAGCG CTGCAGTACGCGGGGAGGCTGGCGGCGGGAAGAGTGCATGGCACCACGTC AGCGCCATCATTCACCCCGGCAATAGCGCTAGCGCCAGCTCTGAGAGCAC TGCTGCTGGTGGCAGCGCTCACGGGCCGGCTGGCCGGTCGCTCGTGCTGT GGAGCACGCTGGCGGTGCGCACGCCAGCCGGCTGTGGGCCCGGCCAGGCT GCGGCGATCGCGCTCGCGGCAGCGTTAAGTGCGGCAGCTGCGCCCATCAC CTGCGGCATGTGCGCTCTAGCCAACAACACTGCCTCTGGTGGTGAGGATC GCACAAGCAGCGGACCTGCGGTGAAGCTCCTGTCCTGGCTCGCTGCACCA GATTGCATCAAGGCCCGCACCACTATGGAGGACTCATTGTCGCGCCTGCT CAAAGCACTCAAGTACGCCCGACGTGATGTTGCTTCCGGCGGTGCAAGGC CCGAAGTCGCTGCCACAGTCACAGCGCTGCTCAGTTCACAAGAGGGCCCT GGCACCACCTGCTTGCGAGTGTTC back to top
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