mRNA_12427 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170336
Unique NamemRNA_12427
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: A0A835YKN6_9STRA (RING/Ubox like zinc-binding domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN6_9STRA)

HSP 1 Score: 466 bits (1199), Expect = 1.180e-166
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1 
Query:    1 MSFDSDNDSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRRLARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEEVS 645
            MSFDSDNDSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRRLARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEEVS
Sbjct:    1 MSFDSDNDSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRRLARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEEVS 215
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BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: A0A7S4D5P1_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5P1_HETAK)

HSP 1 Score: 303 bits (777), Expect = 1.000e-97
Identity = 134/220 (60.91%), Postives = 176/220 (80.00%), Query Frame = 1 
Query:   13 SDNDSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRRLAR-----------QHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEE 639
            SD + EDD CPLCCEELDLSDKNF+PC CGYRVC+WCWH IK+++NGLCPACR+PY+DDPHAFAAV  ++V++ +K+ ++L +           + +L ++ ++QRNLVYV+GLP   ASEE +RR E+FGQ+G+I+KVV N N G PP D RHGSASAYI+F H++DAR+ I +VDG+  +GR ++A+FGTTKYCN+FLR+LPC N EC+YLHELGD E
Sbjct:   14 SDFEVEDDNCPLCCEELDLSDKNFVPCPCGYRVCMWCWHHIKENLNGLCPACRSPYADDPHAFAAVATEEVVEKKKKDKKLKKVENKATRISVDKRSLHNVRVIQRNLVYVIGLPLSIASEEDLRRGEFFGQYGRIHKVVVNHNHGAPPKDPRHGSASAYITFCHKDDARSAIQAVDGYQWDGRLIRASFGTTKYCNNFLRNLPCTNPECLYLHELGDSE 233
[Close]
BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: A0A7S2GN38_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GN38_9STRA)

HSP 1 Score: 279 bits (713), Expect = 5.730e-85
Identity = 138/277 (49.82%), Postives = 173/277 (62.45%), Query Frame = 1 
Query:   22 DSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKR-----------------------------------------------------------------RLARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSAS----AYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEEVS 645
            DS+DDVCPLCCEELD+SDKNF+PC+CGY+VC+WCWH IK+ +NGLCPACR PYSDDPHAF+AVDR +V+K  ++KR                                                                 R+  +  L ++ +VQRNLVYV+G+ P  ASEE +RR E+FGQFGKI KVV N N     GD R+ SAS    AYI+F H+EDA+ACI +VDGF ++GR V+A+FGTTKYCNSFLR+L C N +C+YLHELG+EE S
Sbjct:    3 DSDDDVCPLCCEELDISDKNFMPCRCGYQVCMWCWHHIKNDLNGLCPACRTPYSDDPHAFSAVDRQEVLKQTRQKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTGQRMVSLSVGEGDSGKLRSHHDNIRAHRVPDRKNLQNIRVVQRNLVYVIGISPSIASEETLRRGEYFGQFGKIVKVVVNRNHSGGSGDPRNASASLSASAYITFAHKEDAKACIQAVDGFWMDGRNVRASFGTTKYCNSFLRNLSCTNPDCLYLHELGEEEDS 279
[Close]
BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: B8BXU6_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BXU6_THAPS)

HSP 1 Score: 251 bits (642), Expect = 7.940e-82
Identity = 110/209 (52.63%), Postives = 150/209 (71.77%), Query Frame = 1 
Query:   40 CPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAV-------DRDDVIKSEKR--KRRLARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEE 639
            CPLCCEELDLSDK F PC+CGY+VC+WCWH IK+  +GLCPACR PY DDPH F+A+       D   ++ S  R        +  L  + +++RNLVY VG+PP  A+EE +R+PE+FGQ+GKI K+V N N    PGD R  SASAY++FVH+ED  ACI ++DGF  +GR ++A++GT+KYC++F++ + CNN +C YLH +GD+E
Sbjct:    1 CPLCCEELDLSDKQFYPCKCGYQVCMWCWHRIKESESGLCPACRTPYGDDPHEFSAIGIHHQASDFASLLASNSRGPPEPPKDRSTLATMRVIRRNLVYAVGMPPSIATEELLRKPEYFGQYGKIAKIVINRNHN--PGDPRRASASAYVTFVHKEDTLACILALDGFYHDGRNIRASYGTSKYCSAFIKSVKCNNPDCTYLHHMGDQE 207
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BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: D7FLE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLE0_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 1.740e-80
Identity = 125/275 (45.45%), Postives = 165/275 (60.00%), Query Frame = 1 
Query:    4 SFDSDNDSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRR---------------------------------------------------------------LARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEE 639
            +F+  +D +D VCPLCCE +DLSDKNF+PC CGYRVC+WCWH IK++  GLCPACR+ Y+DDPHAFAAVD+++VIK+E  K                                                                 +A +  L ++ +VQRNLVY  GLP    SEE +RRPE FGQ+GKI K+  +++Q   P   R G+ SA+I+F H+EDA ACI + DGF LEGR +++NFGTTKYC ++LR+ PC+N +C+YLHELGDEE
Sbjct:    6 AFNDSDDGDDAVCPLCCEPMDLSDKNFVPCPCGYRVCMWCWHRIKENYTGLCPACRSEYADDPHAFAAVDKEEVIKNENNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGATSVANRRELANMRVVQRNLVYATGLPAGLDSEEVLRRPENFGQYGKIYKIAISVSQASEP---RPGNFSAHITFAHKEDALACILATDGFWLEGRQLRSNFGTTKYCATYLRNSPCSNPDCLYLHELGDEE 277
[Close]
BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: A0A6H5JC61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC61_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 3.060e-77
Identity = 125/275 (45.45%), Postives = 165/275 (60.00%), Query Frame = 1 
Query:    4 SFDSDNDSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRR---------------------------------------------------------------LARQHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEE 639
            +F+  +D +D VCPLCCE +DLSDKNF+PC CGYRVC+WCWH IK++  GLCPACR+ Y+DDPHAFAAVD+++VIK+E  K                                                                 +A +  L ++ +VQRNLVY  GLP    SEE +RRPE FGQ+GKI K+  +++Q   P   R G+ SA+I+F H+EDA ACI + DGF LEGR +++NFGTTKYC ++LR+ PC+N +C+YLHELGDEE
Sbjct:    6 AFNDSDDGDDAVCPLCCEPMDLSDKNFVPCPCGYRVCMWCWHRIKENYTGLCPACRSEYADDPHAFAAVDKEEVIKNENNKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVXXXXXXXXXXXXXXATSVANRRELANMRVVQRNLVYATGLPAGLDSEEVLRRPENFGQYGKIYKIAISVSQASEP---RPGNFSAHITFAHKEDALACILATDGFWLEGRQLRSNFGTTKYCATYLRNSPCSNPDCLYLHELGDEE 277
[Close]
BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: A0A7S3L167_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L167_9STRA)

HSP 1 Score: 250 bits (639), Expect = 1.490e-75
Identity = 110/226 (48.67%), Postives = 159/226 (70.35%), Query Frame = 1 
Query:   22 DSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRRLAR--------------------QHALLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEE 639
            D  D VCPLCCEELDLSD+ F PC+CGY+VC+WCWH I++  +GLCPACR PY +DPH F+AVD ++V+K+ K K                         +  L ++ +++RNLVY VGLPP  A+EE +R+P++FGQ+GKI+K+V N +Q     DAR  SASAY++FV++ED  +CI ++DGF L+ R ++A++GT+KYC++F++++ CNN +C YLHE+G  E
Sbjct:    2 DDADYVCPLCCEELDLSDREFYPCKCGYQVCMWCWHRIRETESGLCPACRTPYGEDPHQFSAVDVEEVLKANKEKEAAXXXXXXXXQTEDGVDAMAVPQDRTQLANMRVIRRNLVYAVGLPPHIATEENLRKPDFFGQYGKISKIVINRSQANVA-DARRASASAYVTFVYKEDTLSCILALDGFYLDNRNIRASYGTSKYCSAFIKNVRCNNPDCTYLHEMGAAE 226
[Close]
BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: A0A1Z5J8U8_FISSO (CCR4-NOT transcription complex subunit 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J8U8_FISSO)

HSP 1 Score: 246 bits (627), Expect = 1.010e-73
Identity = 114/243 (46.91%), Postives = 157/243 (64.61%), Query Frame = 1 
Query:   22 DSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEK-RKRRLARQHA------------------------------------LLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEE 639
            D  D VCPLCCEELDLSD+ F PC+CGY+VC+WCWH I++  +GLCPACR PY +DPH F+AVD +DV+K+ K R   L RQ                                      L ++ +++RNLVY VGLP   ASE+ +R+PE+FGQ+GKI K+V  +N+ +     R  SASAY++FVH+ED  ACI ++DGF L+ R ++A++GT+KYC++F++ + CNN EC YLHE+G  E
Sbjct:    2 DDADHVCPLCCEELDLSDREFYPCKCGYQVCMWCWHRIRESESGLCPACRTPYGEDPHQFSAVDVEDVLKANKARDAALKRQKQQEGGMLSASQHEGLPNSVANEDVSNVTMEVPKDRSQLANMRVIRRNLVYAVGLPASIASEDVLRKPEYFGQYGKIAKIV--INRAISGDAGRRASASAYVTFVHKEDTLACILALDGFYLDNRNIRASYGTSKYCSAFIKSVRCNNPECTYLHEMGATE 242
[Close]
BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: A0A7S2Y5J5_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y5J5_9STRA)

HSP 1 Score: 246 bits (627), Expect = 2.950e-73
Identity = 110/243 (45.27%), Postives = 155/243 (63.79%), Query Frame = 1 
Query:   22 DSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRRLARQHA-------------------------------------LLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEE 639
            D  + VCPLCCE+LDLSD+ F PC+CGY+VC+WCWH I++  +GLCPACR PY +DPH F+AVD D  IK+ K K   A++                                       L ++ +++RNLVY VGLPP   SE+ +RR ++FGQ+GKI K+V N  Q    GD R  + SAY++FVH+ED  ACI ++DGF ++GR V+A++GT+KYC++F++++ CNN +C YLHE+G  E
Sbjct:    2 DESEHVCPLCCEDLDLSDREFYPCKCGYQVCMWCWHRIRETESGLCPACRTPYGEDPHQFSAVDVDKAIKANKEKEAAAKRDRQRSGQNNPQQPGVPVHEHHIGEILSEASMEVPKDRTLLANMRVIRRNLVYAVGLPPTVGSEDNLRRADYFGQYGKIAKIVLNRTQATS-GDPRRATCSAYVTFVHKEDTLACILAMDGFHMDGRNVRASYGTSKYCSAFIKNVRCNNPDCTYLHEMGAAE 243
[Close]
BLAST of jgi.p|Trimin1|170336 vs. uniprot
Match: A0A7S1C198_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C198_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.900e-72
Identity = 110/262 (41.98%), Postives = 161/262 (61.45%), Query Frame = 1 
Query:   28 EDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMNGLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRRLARQHA----------------------------------------------------------LLHLPLVQRNLVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSASAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNNNECMYLHELGDEE 639
            +++VCPLCCEELD+SDK F PC+CGY+VC+WCWH I+++ NGLCPACR PY DDPH F+A+D ++V+++ K K    ++                                                            L ++ +++RNLVY VGLPP +AS++ +RR E FGQ+G+I KVV N +     GD R  SASAY++FV++EDA ACI ++DGF L+GR ++A++GT+KYC++F++++ CNN EC YLH +G+ E
Sbjct:    3 DNEVCPLCCEELDISDKQFFPCKCGYQVCMWCWHRIRENENGLCPACRTPYGDDPHEFSAIDMEEVVRANKEKAAAEKREXXXXXXXXXXRTNGDGAGSRPPXXAYSNGXXXXGDTDGNNHHSSLSLVSGPTPPRDRSQLANMRVIRRNLVYAVGLPPSSASDDMLRRSEHFGQYGRIGKVVLNRSHIGGGGDPRRASASAYVTFVNKEDALACILALDGFYLDGRNIRASYGTSKYCSAFIKNVRCNNPECTYLHHMGEAE 264
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170336 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKN6_9STRA1.180e-166100.00RING/Ubox like zinc-binding domain-containing prot... [more]
A0A7S4D5P1_HETAK1.000e-9760.91Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2GN38_9STRA5.730e-8549.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B8BXU6_THAPS7.940e-8252.63Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
D7FLE0_ECTSI1.740e-8045.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC61_9PHAE3.060e-7745.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3L167_9STRA1.490e-7548.67Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A1Z5J8U8_FISSO1.010e-7346.91CCR4-NOT transcription complex subunit 4 n=2 Tax=F... [more]
A0A7S2Y5J5_9STRA2.950e-7345.27Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S1C198_9STRA1.900e-7241.98Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:595873..599291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170336|e_gw1.71.76.1
BRITEko00000,ko00001,ko01000,ko03019,ko04121
KEGG Pathwayko03018,map03018
KEGG koko:K10643
EC2.3.2.27
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000288,GO:0000289,GO:0000956,GO:0002682,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010564,GO:0010605,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0016567,GO:0016740,GO:0019222,GO:0019439,GO:0019538,GO:0019787,GO:0019941,GO:0022402,GO:0023052,GO:0030163,GO:0030330,GO:0031570,GO:0031571,GO:0032446,GO:0033554,GO:0034641,GO:0034655,GO:0035556,GO:0036211,GO:0042770,GO:0043170,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045595,GO:0045637,GO:0045652,GO:0045786,GO:0045787,GO:0045930,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051239,GO:0051603,GO:0051716,GO:0051726,GO:0051865,GO:0060255,GO:0065007,GO:0070647,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0090068,GO:0090304,GO:0140096,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903706,GO:2000026,GO:2000045,GO:2000134
Descriptionnuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5175@1|root,KOG2068@2759|Eukaryota
Evalue2.86e-81
Seed ortholog2880.D7FLE0
Hectar predicted targeting categoryother localisation
TranscriptId170658
TrackFilteredModels1
ProteinId170336
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170336gene_12427Tribonema minus UTEX_B_3156 geneContig_71 595873..599291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170336Trimin1|170336|e_gw1.71.76.1Tribonema minus UTEX_B_3156 polypeptideContig_71 595873..599291 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12427_1exon_12427_1Tribonema minus UTEX_B_3156 exonContig_71 595873..595979 +
exon_12427_2exon_12427_2Tribonema minus UTEX_B_3156 exonContig_71 596432..596590 +
exon_12427_3exon_12427_3Tribonema minus UTEX_B_3156 exonContig_71 597547..597673 +
exon_12427_4exon_12427_4Tribonema minus UTEX_B_3156 exonContig_71 597977..598059 +
exon_12427_5exon_12427_5Tribonema minus UTEX_B_3156 exonContig_71 598400..598473 +
exon_12427_6exon_12427_6Tribonema minus UTEX_B_3156 exonContig_71 599194..599291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12427CDS_12427Tribonema minus UTEX_B_3156 CDSContig_71 595873..595979 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12427 ID=mRNA_12427|Name=jgi.p|Trimin1|170336|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=648bp|location=Sequence derived from alignment at Contig_71:595873..599291+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCTTTGACAGCGACAATGACAGCGAGGACGATGTGTGCCCCTTATG
CTGCGAGGAGCTGGATCTCAGCGACAAGAACTTCCTGCCGTGCCAATGCG
GTTACAGGGTGTGCATCTGGTGCTGGCACACCATCAAGGACCACATGAAC
GGCCTGTGCCCCGCCTGCCGCAACCCGTACTCGGACGACCCGCACGCATT
CGCCGCCGTCGACCGAGACGACGTCATCAAGTCGGAAAAGCGGAAGCGGC
GGTTAGCCAGGCAGCACGCTCTCCTGCACCTCCCTCTCGTGCAGCGCAAC
CTGGTGTATGTTGTTGGGCTACCGCCAGTGGCAGCCTCTGAAGAATATAT
CCGCCGGCCGGAGTGGTTTGGCCAATTTGGCAAAATCAATAAGGTCGTCG
CAAATTTGAACCAGGGGCTGCCGCCCGGAGATGCCAGGCACGGCAGTGCA
AGCGCTTACATCAGCTTTGTTCACAGAGAGGATGCGAGAGCGTGCATACA
CAGCGTGGATGGGTTTGTGCTGGAGGGCCGCACCGTCAAGGCTAATTTTG
GCACCACCAAGTATTGCAACAGCTTCCTGCGGCACCTTCCTTGCAACAAC
AACGAGTGCATGTATCTGCACGAGTTGGGGGATGAGGAGGTGAGTTGA
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protein sequence of jgi.p|Trimin1|170336

>Trimin1|170336|e_gw1.71.76.1 ID=Trimin1|170336|e_gw1.71.76.1|Name=jgi.p|Trimin1|170336|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp
MSFDSDNDSEDDVCPLCCEELDLSDKNFLPCQCGYRVCIWCWHTIKDHMN
GLCPACRNPYSDDPHAFAAVDRDDVIKSEKRKRRLARQHALLHLPLVQRN
LVYVVGLPPVAASEEYIRRPEWFGQFGKINKVVANLNQGLPPGDARHGSA
SAYISFVHREDARACIHSVDGFVLEGRTVKANFGTTKYCNSFLRHLPCNN
NECMYLHELGDEEVS*
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mRNA from alignment at Contig_71:595873..599291+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12427 ID=mRNA_12427|Name=jgi.p|Trimin1|170336|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3419bp|location=Sequence derived from alignment at Contig_71:595873..599291+ (Tribonema minus UTEX_B_3156 )
ATGAGCTTTGACAGCGACAATGACAGCGAGGACGATGTGTGCCCCTTATG
CTGCGAGGAGCTGGATCTCAGCGACAAGAACTTCCTGCCGTGCCAATGCG
GTTACAGGTATGAAGATCAGTCTGGCAGAGCAAGCGTAACTGGCAGTTAG
CCAGCAGTTGCTCAGGCAAATCAGAAGGAGGAGCACACCACAGAGTACAA
GCCACTGCTGCGCACCCCGTGCCAAGCACAAGTGTACCGTCATTGGGTCA
GCGATTGCAGCGTCTGTTGTGGTGGTGATGCACATACTTGTATATGCTGC
GGGCAACATACAAGCGAGCGTTCCCTCCTCATTTCATTGCCGCGGTGAAC
ACCACAATCACAGCGAGCAGCTGACGCATATGCCTATGCTGCTGCTGGCA
AGCGCTGGTCCGCTTTGAGACGCGCTGTGAGGCGCCACATGTCAAAATTG
AGCGCTTTGACACATGCCATCTTCGTCGGTATGGTGGTGCCACTGGTGCA
TGTTCAGGATTATGACAACTCGCAACTGCGCATGCGTCGCACGTGTAACT
CTGCCGCAGGGTGTGCATCTGGTGCTGGCACACCATCAAGGACCACATGA
ACGGCCTGTGCCCCGCCTGCCGCAACCCGTACTCGGACGACCCGCACGCA
TTCGCCGCCGTCGACCGAGACGACGTCATCAAGTCGGAAAAGCGGAAGCG
GCGGTTAGCCAGGCAGCAGTCGGCGGCAGCCAACAGCAGCATGGGAGGGG
GGGGCGGGGGCGGAGGGGGAGGGGGAGGGGGGGGTGGGGGGAGCTCGGGG
GGTGCTGCGGCGGCGGCGGCCCGTGCGGGCGTTGTTAATAGGCGGGAGCT
GGCTCAGTTCCGAGTTATTCAGGTGAGACATGATGAGTGTTGATGACCTC
TTTGTCACTTCGCACTGGCAGCCACATAATGGTCCTCGTTGCAGCAGTCT
CGGTCCAAACGGATGGCCAATGCGGTCATGGCTTTGCAGAGGGCTGTCAG
CAGAGTGCTGTCACTATCTTGAGCTCGTGAGAGTATGTGCTCTACAAAGG
TGTGCGGTGCATCTCATGGCATCAACCTGGCATTCAGATGTGACACAATT
ATAGCATGCAGACCATGTGCGCGGAGCAGGCCCTCTGCGTGCAAGAGTGC
TCTATGGCCCCGGCCCAGCTCTGTAGTGCTACCTCTGCTGTGGTCACGCT
TGGTGACCTGCCCTTGTGCAGGTCATTTGAGCATGCATGAGCGGTGCGGC
TGGCACCATGTAGCTGAACTTGAAGTTGAAGTCATGAACACTGCAGGCTC
AGCGACCGTCAGGTTCCTATCAGCTTTTCGGTCATATCACGCAATCTGGT
CGGCATGCCGTGTTTTTGGGCTCATGTGTCTTGCATGTTGTGCTGTGCGA
TTGCTGTTTAAAAGTCTTTGCAGGCAATCTGCACAATTTGTGCCTTGGAT
GGCGATTGTGAATCACATGTACCCCGATAACTTTGTGGTTCGTCGGCATT
GTGGAATTATCAGTATCTTGCGGTGCTGTGCACAGGCATGCAGATGCAGC
ACTGGTGCGCATTCCTCATAATCACTTACCGCTGTCATTGTCATTGCTCG
TCAAACTTTGGAGACAGCGATGCGGTTCTGGCATCAGTTGAATGGCATTT
CCAATCAATGTGTCTGCTTACGAGCGCTCTCCTGCACCTCCCTCTCGTGC
AGCGCAACCTGGTGTATGTTGTTGGGCTACCGCCAGTGGCAGCCTCTGAA
GAATATATCCGCCGGCCGGAGTGGTTTGGCCAATTTGGCAAAATCAATAA
GGTACGCAGCGCCTACTGGTGCTCACGTATGCCAATGTGTGCACAATATG
TACGGGTGGGCTGTCAAAGCCATGCCTGCACACTGACAGTGTGTTGCTTA
CGGCACCATTTACTCTCATCGGCCTCTGGAAGGGGAGTCAGTGCTAATCA
TGCCCGTGCATTGTGCTGAGACTTTTTGCAATATGCAGTGTAGGTATGCT
GCCATTATGCACCCTGTTGCCGCACTGGCTTGGAGGCATCGCACTGGCCA
CGTATCTCATGCTATTGCGCGATAATAACTCTATCGCGCTATTCCCCCAT
GCAGGTCGTCGCAAATTTGAACCAGGGGCTGCCGCCCGGAGATGCCAGGC
ACGGCAGTGCAAGCGCTTACATCAGCTTTGTTCACAGGTGGGTGCGCGCT
TAGACTATGTGCGTGTCTTTGTGCTGCACCGTTCCGTGATAGGTCGCGCA
TGCCCCCAAGTGCACGGGGAATAAGCGGAGCTACAGTGAGTCGGGCGCAT
TTATTGCCTCTGTGGCAGAGCTCAGTCATCAGTTTGCGTTCCTAAAGGTG
GCAGGCGAAGCTGTATCTTGGTTTCAGCTGCATGCGGTGCCAGCTTTCGA
GTGCACCGCGCACGAGTTCTGTAACAGCCATGAATGCTGCACTTCGCGAC
CCTCGCCGGCGTTGTGAAGCTTGCAACAACCATTCAATTGCTAAGTTTGT
GATCCTGTTTGCGCTTTCGTGTTGCAGAGAGGATGCGAGAGCGTGCATAC
ACAGCGTGGATGGGTTTGTGCTGGAGGGCCGCACCGTCAAGGCTAATTTT
GGTGAGGCAGTGCTCAAATTCCATATACTTGAAGTTTTACTGTGGTTCCT
GTCGTTGTCGCTTCTCATAACCGTTGCAATATTGACATTGCGCAAATCAC
CGTGCAGGAAACCTGAGCTTGAGCCATCACAGCAACAAGTCACACACACG
TGCTAGTGTGTAGGAAAGGAAGTGATCTTACAAAGCACAGCAAGCCCGGG
CATTCCAGCTCAGGATTGCTGAGTCAGCCATGCAAAAGATCTCGAACTGA
TTTCGAACAGATCTCGATCAAACTGCAACGTCAAGTGCACAACTTCAAGT
GTAACCTGACTGCTACAAAACAGTGCTCAATTCAACACTGCTGAATGAAT
TCGCCACATGGTGTTGTGCAACTACATACCACTCTAGTGTTGCTGTCGCT
GCATAATGAGTTTGTCACGAGGGCTGCACAATTACCATTAGCAGTTGTTT
GGTGCCGGTTTTTCGCCGGATTTGTTGCTTGCGTGTATGCAACCCTCAAC
ACAGGGCGTTTGCCTACTCCATGGCTTCCTCTTCTCACCTTCAGCAAGAG
GTTTCACGATCAGTGCTCAGGACGGTGTCACATCGATATTAGTTTAATGA
AGGCCTTGCCGACCGCTATTAGAGATCGACACTTATGTCAACAAAGGCTG
ACGCTCTTGACAAGCTCCCTAGTGTTATCGCTCACATTGTCTACATCTAT
GTTGTCTTGTACGTCGCCCAGGCACCACCAAGTATTGCAACAGCTTCCTG
CGGCACCTTCCTTGCAACAACAACGAGTGCATGTATCTGCACGAGTTGGG
GGATGAGGAGGTGAGTTGA
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Coding sequence (CDS) from alignment at Contig_71:595873..599291+

>mRNA_12427 ID=mRNA_12427|Name=jgi.p|Trimin1|170336|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_71:595873..599291+ (Tribonema minus UTEX_B_3156 )
ATGAGCTTTGACAGCGACAATGACAGCGAGGACGATGTGTGCCCCTTATG
CTGCGAGGAGCTGGATCTCAGCGACAAGAACTTCCTGCCGTGCCAATGCG
GTTACAGGGTGTGCATCTGGTGCTGGCACACCATCAAGGACCACATGAAC
GGCCTGTGCCCCGCCTGCCGCAACCCGTACTCGGACGACCCGCACGCATT
CGCCGCCGTCGACCGAGACGACGTCATCAAGTCGGAAAAGCGGAAGCGGC
GGTTAGCCAGGCAGCACGCTCTCCTGCACCTCCCTCTCGTGCAGCGCAAC
CTGGTGTATGTTGTTGGGCTACCGCCAGTGGCAGCCTCTGAAGAATATAT
CCGCCGGCCGGAGTGGTTTGGCCAATTTGGCAAAATCAATAAGGTCGTCG
CAAATTTGAACCAGGGGCTGCCGCCCGGAGATGCCAGGCACGGCAGTGCA
AGCGCTTACATCAGCTTTGTTCACAGAGAGGATGCGAGAGCGTGCATACA
CAGCGTGGATGGGTTTGTGCTGGAGGGCCGCACCGTCAAGGCTAATTTTG
GCACCACCAAGTATTGCAACAGCTTCCTGCGGCACCTTCCTTGCAACAAC
AACGAGTGCATGTATCTGCACGAGTTGGGGGATGAGGAGGTGAGTTGA
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