mRNA_12371 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150621
Unique NamemRNA_12371
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|150621 vs. uniprot
Match: A0A836C9V5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V5_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.430e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330
            GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW
Sbjct:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 110
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BLAST of jgi.p|Trimin1|150621 vs. uniprot
Match: D7G3I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I8_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 7.780e-32
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330
            GLVTQ +S +VM FA Q+VK LHYSFG+++ P D  D E  H TFPL+RVMD  V+T + E  P LG  + E  EER ARR GK+P+  + TD TYTMAF SG+V+FQ W
Sbjct:  218 GLVTQTVSKIVMSFAKQMVKSLHYSFGERRPPSDPLDVENPHVTFPLYRVMDWFVVTAEDEKPPTLGGALTESAEERAARRGGKSPDIVWSTDVTYTMAFQSGIVNFQDW 327
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BLAST of jgi.p|Trimin1|150621 vs. uniprot
Match: A0A6H5KTB8_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.070e-31
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1 
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330
            GLVTQ +S +VM FA Q+VK LHYSFG+++ P D  D E  H TFPL+RVMD  V+T + E  P LG  + E  EER ARR GK+P+  + TD TYTMAF SG+V+FQ W
Sbjct:   80 GLVTQTVSKIVMSFAKQMVKSLHYSFGERRPPSDPLDIENPHVTFPLYRVMDWFVVTAEDEKPPTLGGALTESAEERAARRGGKSPDIVWSTDVTYTMAFQSGIVNFQDW 189
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BLAST of jgi.p|Trimin1|150621 vs. uniprot
Match: A0A7S4DAD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAD8_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.610e-18
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 1 
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDK-KVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDF 321
            GLV  A +   ++F S + + LHYS GDK +   +  +AE  H TFPL ++ DR+V TP+G   P LG  I+E DE +QAR++   PE  +    TYT AF S +VD+
Sbjct:   26 GLVAGATARAGLKFVSSIQRSLHYSLGDKGRGAAERPEAEYPHMTFPLVKICDRVVPTPEGAEAPALGQEIEESDEAKQARKSSTEPE-VYLPGRTYTFAFFSSIVDW 132
[Close]
BLAST of jgi.p|Trimin1|150621 vs. uniprot
Match: A0A836CIV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.090e-16
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1 
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330
            GLVT  L   ++ FA +L + +HYSFG K       ++E  H +FPL   +D +++TP GEA PPLG    E    ++ R +GK    +F  D TYT +FHS  +    W
Sbjct:    4 GLVTMGLCRAMLSFAQRLNRNMHYSFGSKD------NSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 107
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BLAST of jgi.p|Trimin1|150621 vs. uniprot
Match: A0A0M0JZC7_9EUKA (DUF547 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZC7_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.350e-6
Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 1 
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGV--MIDEPDEERQARRAGKTPEPA--FRTDATYTMAFHSGMVDFQKW 330
            GL+T+ ++  V+   S ++ + H+SFG+   P  S +AE  H    L    DR+++TP GEA PPLG     D  D E  A R  +    A  F    TYT +F++  +D   W
Sbjct:   42 GLLTKGVARGVLSLISAVLPI-HFSFGN---PSLSQNAERPHIVSNLMIAADRMIVTPAGEAPPPLGTDATFDLEDLEDNAARKRRRQLGAIPFEVGPTYTFSFNTSNLDLPTW 151
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150621 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836C9V5_9STRA3.430e-74100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G3I8_ECTSI7.780e-3256.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTB8_9PHAE1.070e-3156.36DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S4DAD8_HETAK1.610e-1842.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CIV3_9STRA1.090e-1638.18Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A0M0JZC7_9EUKA1.350e-634.21DUF547 domain-containing protein n=1 Tax=Chrysochr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_71contigContig_71:103227..104056 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150621|gw1.71.77.1
DescriptionProtein of unknown function, DUF547
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28IMD@1|root,2R35N@2759|Eukaryota
Evalue2.4e-15
Seed ortholog653948.CCA18149
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDomain of unknown function DUF547
Ec32 orthologEc-19_004760.2
TranscriptId150943
TrackFilteredModels1
ProteinId150621
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150621gene_12371Tribonema minus UTEX_B_3156 geneContig_71 103227..104056 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12371_1exon_12371_1Tribonema minus UTEX_B_3156 exonContig_71 103227..103451 +
exon_12371_2exon_12371_2Tribonema minus UTEX_B_3156 exonContig_71 103952..104056 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12371CDS_12371Tribonema minus UTEX_B_3156 CDSContig_71 103227..103451 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150621Trimin1|150621|gw1.71.77.1Tribonema minus UTEX_B_3156 polypeptideContig_71 103227..104056 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12371 ID=mRNA_12371|Name=jgi.p|Trimin1|150621|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_71:103227..104056+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGACTCGTTACTCAAGCGCTGAGCTCTGTGGTGATGCGGTTTGCATCGCA
GCTGGTCAAGGTGTTGCACTACTCATTCGGGGACAAGAAAGTGCCTGAAG
ATTCCGGCGATGCAGAGCCGATGCATGCGACATTTCCCCTCTTTCGAGTC
ATGGATAGGATCGTGATTACGCCGGATGGAGAGGCGGTGCCGCCACTGGG
CGTCATGATCGACGAGCCCGATGAGGAACGGCAAGCGAGAAGAGCGGGCA
AGACACCTGAACCCGCCTTCCGAACGGATGCCACCTACACCATGGCCTTC
CACAGTGGCATGGTTGACTTTCAGAAGTGG
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protein sequence of jgi.p|Trimin1|150621

>Trimin1|150621|gw1.71.77.1 ID=Trimin1|150621|gw1.71.77.1|Name=jgi.p|Trimin1|150621|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRV
MDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAF
HSGMVDFQKW
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mRNA from alignment at Contig_71:103227..104056+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12371 ID=mRNA_12371|Name=jgi.p|Trimin1|150621|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=830bp|location=Sequence derived from alignment at Contig_71:103227..104056+ (Tribonema minus UTEX_B_3156 )
GGACTCGTTACTCAAGCGCTGAGCTCTGTGGTGATGCGGTTTGCATCGCA
GCTGGTCAAGGTGTTGCACTACTCATTCGGGGACAAGAAAGTGCCTGAAG
ATTCCGGCGATGCAGAGCCGATGCATGCGACATTTCCCCTCTTTCGAGTC
ATGGATAGGATCGTGATTACGCCGGATGGAGAGGCGGTGCCGCCACTGGG
CGTCATGATCGACGAGCCCGATGAGGTATGTATGTATGCATGCTCGTATG
CATACCTCATGCGTGTGCATGTCTGTTTGGTGGACTGGCGTATGTAAACA
CGTACTAGAACACAGACGCCATGCGCAAAATTACACATGAAGTATACGTA
GACTATATCTTCTGTTACGTATGTGTGTACTTTGAGTGCGGGCTTATTGA
ACTTCCCTGCGCAAGGCTCGTCATCTCCAAAGCATGACTGCACATGCTAG
GTCTGATTGCCCCAACATCAAGCGGAAGACAAGGGGTAGGGTCAGAGGAG
AATCCACGCGAGCAGCGCAGGACCTTGCCGCTGTAGTTTGTACGTTGCAC
TGTGCTCCTCTTTTTGAATTGAGATTGTGCAGGAATACCAAACGCAGGAG
GAAGGTGAATCTTCACGCCAGCTTGTGTGCATTTGCTTCACCTCCAAAGT
GGACACTGCTGCAATGATCGTCCCAGCGCTGCTGACCAGAGCCTCCTCCC
CCACAACCGCATGTATGCAATGCAGGAACGGCAAGCGAGAAGAGCGGGCA
AGACACCTGAACCCGCCTTCCGAACGGATGCCACCTACACCATGGCCTTC
CACAGTGGCATGGTTGACTTTCAGAAGTGG
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Coding sequence (CDS) from alignment at Contig_71:103227..104056+

>mRNA_12371 ID=mRNA_12371|Name=jgi.p|Trimin1|150621|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_71:103227..104056+ (Tribonema minus UTEX_B_3156 )
GGACTCGTTACTCAAGCGCTGAGCTCTGTGGTGATGCGGTTTGCATCGCA
GCTGGTCAAGGTGTTGCACTACTCATTCGGGGACAAGAAAGTGCCTGAAG
ATTCCGGCGATGCAGAGCCGATGCATGCGACATTTCCCCTCTTTCGAGTC
ATGGATAGGATCGTGATTACGCCGGATGGAGAGGCGGTGCCGCCACTGGG
CGTCATGATCGACGAGCCCGATGAGGAACGGCAAGCGAGAAGAGCGGGCA
AGACACCTGAACCCGCCTTCCGAACGGATGCCACCTACACCATGGCCTTC
CACAGTGGCATGGTTGACTTTCAGAAGTGG
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