mRNA_12358 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|176183
Unique NamemRNA_12358
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|176183 vs. uniprot
Match: A0A835Z973_9STRA (Uncharacterized protein (Fragment) n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z973_9STRA)

HSP 1 Score: 122 bits (307), Expect = 8.150e-31
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 
Query:    1 MENVVIKRCETPGCKKQPVYGLPGGRAKHCSPHAEEGEGDVKNXXXXXXXXXXXXXXXXPSSKRATHRXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPGERADRCAA 321
            MENVVIKRCETPGCKKQPVYGLPGGRAKHCSPHAEEGEGDVKNXXXXXXXXXXXXXXXXPSSKRATHRXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPGERADRCAA
Sbjct:    1 MENVVIKRCETPGCKKQPVYGLPGGRAKHCSPHAEEGEGDVKNXXXXXXXXXXXXXXXXPSSKRATHRXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPGERADRCAA 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|176183 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z973_9STRA8.150e-31100.00Uncharacterized protein (Fragment) n=3 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:415596..416291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|176183|e_gw1.134.67.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-05_005140.1
TranscriptId176505
TrackFilteredModels1
ProteinId176183
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176183gene_12358Tribonema minus UTEX_B_3156 geneContig_134 415596..416291 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12358_1exon_12358_1Tribonema minus UTEX_B_3156 exonContig_134 415596..416291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12358CDS_12358Tribonema minus UTEX_B_3156 CDSContig_134 415596..416291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|176183Trimin1|176183|e_gw1.134.67.1Tribonema minus UTEX_B_3156 polypeptideContig_134 415596..416291 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12358 ID=mRNA_12358|Name=jgi.p|Trimin1|176183|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=696bp|location=Sequence derived from alignment at Contig_134:415596..416291+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAACGTCGTAATCAAGCGCTGCGAGACTCCGGGGTGCAAGAAGCA
GCCCGTGTACGGGTTGCCGGGAGGTCGAGCGAAGCACTGCTCGCCCCACG
CAGAAGAGGGAGAGGGGGACGTCAAGAACAAGAGGTGCACCGGACCCGGG
TGCACAAAGCAGCCAGCGTACGGAACTCCATCGTCGAAGCGGGCGACGCA
CCGCGCGGACCATCGTTCGCCGGACATGGTCGACGTCAACAACGCATTGT
GCTCGCGCCCGGGGTGCATCAAGCGTCCGACGTTCGCGGCTCCCGGCGAG
CGCGCAGACCGCTGCGCGGCGCACAGGCTGGACGGAGACGTCGACATGAA
GAATCGGAAGTGCGACTTCCCCGGGTGCGACCGCGTCCGCAACTACGGAC
CCCAAGGAGGCAGGGCGACGCGCTGCGCCGGCCACAAGGAGGCAGGGTTC
GTCGACGTCAACGCGCCTAGATGCGACTGGCTCGGGTGCAGACACCGGCC
CACGTTCGGGACGGAGAGCAAGAGGCCCAGCCGTTGCGGAGCTCACAGGA
CGGAGGAGATGTGGGATGTCGTCAACCGCACGTGCGAGCGGGAGGGGTGC
GAGGTGCAGCCCAGGTACGGGTTCCCCGACGAGTCCCCCCGTTTCTGCGT
CGCTCACAGGGAGGAGGGGATGGAGGACCACGTCACCGCGCGGTGC
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protein sequence of jgi.p|Trimin1|176183

>Trimin1|176183|e_gw1.134.67.1 ID=Trimin1|176183|e_gw1.134.67.1|Name=jgi.p|Trimin1|176183|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=232bp
MENVVIKRCETPGCKKQPVYGLPGGRAKHCSPHAEEGEGDVKNKRCTGPG
CTKQPAYGTPSSKRATHRADHRSPDMVDVNNALCSRPGCIKRPTFAAPGE
RADRCAAHRLDGDVDMKNRKCDFPGCDRVRNYGPQGGRATRCAGHKEAGF
VDVNAPRCDWLGCRHRPTFGTESKRPSRCGAHRTEEMWDVVNRTCEREGC
EVQPRYGFPDESPRFCVAHREEGMEDHVTARC
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mRNA from alignment at Contig_134:415596..416291+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12358 ID=mRNA_12358|Name=jgi.p|Trimin1|176183|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=696bp|location=Sequence derived from alignment at Contig_134:415596..416291+ (Tribonema minus UTEX_B_3156 )
ATGGAGAACGTCGTAATCAAGCGCTGCGAGACTCCGGGGTGCAAGAAGCA
GCCCGTGTACGGGTTGCCGGGAGGTCGAGCGAAGCACTGCTCGCCCCACG
CAGAAGAGGGAGAGGGGGACGTCAAGAACAAGAGGTGCACCGGACCCGGG
TGCACAAAGCAGCCAGCGTACGGAACTCCATCGTCGAAGCGGGCGACGCA
CCGCGCGGACCATCGTTCGCCGGACATGGTCGACGTCAACAACGCATTGT
GCTCGCGCCCGGGGTGCATCAAGCGTCCGACGTTCGCGGCTCCCGGCGAG
CGCGCAGACCGCTGCGCGGCGCACAGGCTGGACGGAGACGTCGACATGAA
GAATCGGAAGTGCGACTTCCCCGGGTGCGACCGCGTCCGCAACTACGGAC
CCCAAGGAGGCAGGGCGACGCGCTGCGCCGGCCACAAGGAGGCAGGGTTC
GTCGACGTCAACGCGCCTAGATGCGACTGGCTCGGGTGCAGACACCGGCC
CACGTTCGGGACGGAGAGCAAGAGGCCCAGCCGTTGCGGAGCTCACAGGA
CGGAGGAGATGTGGGATGTCGTCAACCGCACGTGCGAGCGGGAGGGGTGC
GAGGTGCAGCCCAGGTACGGGTTCCCCGACGAGTCCCCCCGTTTCTGCGT
CGCTCACAGGGAGGAGGGGATGGAGGACCACGTCACCGCGCGGTGC
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Coding sequence (CDS) from alignment at Contig_134:415596..416291+

>mRNA_12358 ID=mRNA_12358|Name=jgi.p|Trimin1|176183|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=696bp|location=Sequence derived from alignment at Contig_134:415596..416291+ (Tribonema minus UTEX_B_3156 )
ATGGAGAACGTCGTAATCAAGCGCTGCGAGACTCCGGGGTGCAAGAAGCA
GCCCGTGTACGGGTTGCCGGGAGGTCGAGCGAAGCACTGCTCGCCCCACG
CAGAAGAGGGAGAGGGGGACGTCAAGAACAAGAGGTGCACCGGACCCGGG
TGCACAAAGCAGCCAGCGTACGGAACTCCATCGTCGAAGCGGGCGACGCA
CCGCGCGGACCATCGTTCGCCGGACATGGTCGACGTCAACAACGCATTGT
GCTCGCGCCCGGGGTGCATCAAGCGTCCGACGTTCGCGGCTCCCGGCGAG
CGCGCAGACCGCTGCGCGGCGCACAGGCTGGACGGAGACGTCGACATGAA
GAATCGGAAGTGCGACTTCCCCGGGTGCGACCGCGTCCGCAACTACGGAC
CCCAAGGAGGCAGGGCGACGCGCTGCGCCGGCCACAAGGAGGCAGGGTTC
GTCGACGTCAACGCGCCTAGATGCGACTGGCTCGGGTGCAGACACCGGCC
CACGTTCGGGACGGAGAGCAAGAGGCCCAGCCGTTGCGGAGCTCACAGGA
CGGAGGAGATGTGGGATGTCGTCAACCGCACGTGCGAGCGGGAGGGGTGC
GAGGTGCAGCCCAGGTACGGGTTCCCCGACGAGTCCCCCCGTTTCTGCGT
CGCTCACAGGGAGGAGGGGATGGAGGACCACGTCACCGCGCGGTGC
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