mRNA_12313 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352863
Unique NamemRNA_12313
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352863 vs. uniprot
Match: A0A835ZA64_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA64_9STRA)

HSP 1 Score: 341 bits (875), Expect = 1.020e-116
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1 
Query:    1 MQFVGEHRYLPIASCCDGLKRAYLEAHTTAPALQNAPAXXXXXXXXDSPADSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTSLEMAAKLGHVDVLRTLYSGSRTEPAASERMVLRAAEGGQLSVLEWLSKRQSPDQWGTRLFNLVAGSGSVELLAELRRGKFSSDASRDIAANYEEDHRKGGLQGRGGLVPEQLQLEVRVTVERRDAQLQVLS 645
            MQFVGEHRYLPIASCCDGLKRAYLEAHTTAPALQNAPAXXXXXXXXDSPADSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTSLEMAAKLGHVDVLRTLYSGSRTEPAASERMVLRAAEGGQLSVLEWLSKRQSPDQWGTRLFNLVAGSGSVELLAELRRGKFSSDASRDIAANYEEDHRKGGLQGRGGLVPEQLQLEVRVTVERRDAQLQVLS
Sbjct:    1 MQFVGEHRYLPIASCCDGLKRAYLEAHTTAPALQNAPAXXXXXXXXDSPADSEAAXXXXXXXXXXXXXXXXXXXXXXXXXXTTSLEMAAKLGHVDVLRTLYSGSRTEPAASERMVLRAAEGGQLSVLEWLSKRQSPDQWGTRLFNLVAGSGSVELLAELRRGKFSSDASRDIAANYEEDHRKGGLQGRGGLVPEQLQLEVRVTVERRDAQLQVLS 215
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352863 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZA64_9STRA1.020e-116100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_134contigContig_134:160042..161636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352863|estExt_Genemark1.C_Ctg_1340025
Hectar predicted targeting categoryother localisation
TranscriptId353185
TrackFilteredModels1
ProteinId352863
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352863gene_12313Tribonema minus UTEX_B_3156 geneContig_134 160042..161636 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12313_1exon_12313_1Tribonema minus UTEX_B_3156 exonContig_134 160042..160296 +
exon_12313_2exon_12313_2Tribonema minus UTEX_B_3156 exonContig_134 160555..160830 +
exon_12313_3exon_12313_3Tribonema minus UTEX_B_3156 exonContig_134 161424..161636 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12313CDS_12313Tribonema minus UTEX_B_3156 CDSContig_134 160042..160296 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12313UTR3_12313Tribonema minus UTEX_B_3156 three_prime_UTRContig_134 161541..161636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352863Trimin1|352863|estExt_Genemark1.C_Ctg_1340025Tribonema minus UTEX_B_3156 polypeptideContig_134 160042..161540 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12313 ID=mRNA_12313|Name=jgi.p|Trimin1|352863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=744bp|location=Sequence derived from alignment at Contig_134:160042..161636+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATTTGTCGGCGAGCACAGGTACCTGCCCATCGCGTCCTGCTGCGA
TGGCCTCAAGCGAGCCTACCTCGAGGCCCACACCACCGCTCCAGCACTGC
AGAACGCGCCTGCGCCTGCGCCTGCACCGGCCAACGCGGATTCTCCCGCT
GACTCGGAGGCCGCGCCTGGCCCACTGGCAGCACCGGCAAACGAGGATCC
CCCCGCCGACTCAGAGGCCGCGCCTGACCCACTGGCAGCACCGACAACAT
CACTGGAGATGGCGGCCAAGCTTGGCCATGTAGACGTCTTGCGCACGCTG
TACTCCGGCTCCCGCACAGAACCTGCTGCCAGCGAGCGCATGGTGCTGCG
TGCAGCAGAGGGAGGGCAGCTTAGTGTGCTGGAGTGGCTGAGCAAGCGCC
AGAGCCCGGATCAGTGGGGCACGCGCTTGTTTAACCTCGTAGCTGGCAGC
GGTAGCGTCGAGCTGTTGGCAGAGCTGCGCCGCGGCAAATTTTCCAGTGA
TGCATCGCGGGATATCGCTGCCAACTACGAGGAGGATCATAGAAAGGGGG
GACTTCAAGGCCGCGGAGGGTTGGTCCCGGAACAACTTCAACTTGAAGTC
AGGGTCACGGTGGAGAGGCGCGATGCTCAGCTTCAAGTTCTGAGCTGAGC
AGTGGATAGTTGTATTGTGTATACTTCATATTTGCAATGCTCCAGTCAGG
GCTACAAGCCCCTTTCAACATTTAATTTACTTCTCAATAGACGG
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protein sequence of jgi.p|Trimin1|352863

>Trimin1|352863|estExt_Genemark1.C_Ctg_1340025 ID=Trimin1|352863|estExt_Genemark1.C_Ctg_1340025|Name=jgi.p|Trimin1|352863|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp
MQFVGEHRYLPIASCCDGLKRAYLEAHTTAPALQNAPAPAPAPANADSPA
DSEAAPGPLAAPANEDPPADSEAAPDPLAAPTTSLEMAAKLGHVDVLRTL
YSGSRTEPAASERMVLRAAEGGQLSVLEWLSKRQSPDQWGTRLFNLVAGS
GSVELLAELRRGKFSSDASRDIAANYEEDHRKGGLQGRGGLVPEQLQLEV
RVTVERRDAQLQVLS*
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mRNA from alignment at Contig_134:160042..161636+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12313 ID=mRNA_12313|Name=jgi.p|Trimin1|352863|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1595bp|location=Sequence derived from alignment at Contig_134:160042..161636+ (Tribonema minus UTEX_B_3156 )
ATGCAATTTGTCGGCGAGCACAGGTACCTGCCCATCGCGTCCTGCTGCGA
TGGCCTCAAGCGAGCCTACCTCGAGGCCCACACCACCGCTCCAGCACTGC
AGAACGCGCCTGCGCCTGCGCCTGCACCGGCCAACGCGGATTCTCCCGCT
GACTCGGAGGCCGCGCCTGGCCCACTGGCAGCACCGGCAAACGAGGATCC
CCCCGCCGACTCAGAGGCCGCGCCTGACCCACTGGCAGCACCGACAACAT
CACTGGTCAGATGGGTAATGGAGGTACCCATTGCTTGCCCAGTTCAGAAT
CTGTTTTGGGAGCAGCACGAACTTCGTGAGCGGCGCGCGGATCAGCAGGA
GCGCACCATTGCTGTCGCCACTGCCCCGGGGGGCACTGGCATGTTTGGGG
CGTCTTCAGAGCAGTGGATTCCACTGATGGAAGCCGTAACACGCACAGGC
GACGCGCACCTTCTGGGACGTCTCCTTATACATCAGAGTGTTGTTGTCAC
CACAAACCTCAAGGAGATGGCGGCCAAGCTTGGCCATGTAGACGTCTTGC
GCACGCTGTACTCCGGCTCCCGCACAGAACCTGCTGCCAGCGAGCGCATG
GTGCTGCGTGCAGCAGAGGGAGGGCAGCTTAGTGTGCTGGAGTGGCTGAG
CAAGCGCCAGAGCCCGGATCAGTGGGGCACGCGCTTGTTTAACCTCGTAG
CTGGCAGCGGTAGCGTCGAGCTGTTGGCAGAGCTGCGCCGCGGCAAATTT
TCCAGTGATGCATCGCGGGATATCGCTGCCAACTACGAGGTTGAACAAGC
GCGTGCCCCACTGATCCGGGCTCTGGCGCTTGCTCAGCCACTCCAGCACA
GTAAGCTGCCCTCCCTCTGCTGCACGCCGCACCATGCGCTTGCTGGCAGC
AGGTTCTGTGCGGGAGCCGGAGTACAGCGTGCGCAAGACGTCTACATGGC
CAAGTTCGGCCGCCATCTCCTTGAGGTTTGTCGTCACAACAACACTCTGG
AGTATAATAAGACGCCCCAGGAGCTACGCGTCGCCTGTGCGTGTTGCAGC
TTCTGTCAATGGCTTCCACTGCTCCGAAGACGCCCAAACATGCCAGTGCC
CCCCCGTGCGGTGGCGACAGCGATAATGCGCTCCTGCTGATCCGCGCGCC
GCTCACGAAGCTCGTACTGCTCCCAAAACAGATTATGAACTGGGCAAGCA
ATGGGTACCTCCATTACCGTCGCCAACGGCTGCTCATGGAACAGCCTGAG
GGAGCAATGCCTGCAGGGATCTGACGAGGCGGTGCAGCAGTGGATCAACA
CTCACCAAGTCAGACGTACTACGGCGTAGCGCGCTTAAGCAATTGCAAGT
TCACAGCACCTGCTGCGGCCACTTTGGTGCAGGAGGATCATAGAAAGGGG
GGACTTCAAGGCCGCGGAGGGTTGGTCCCGGAACAACTTCAACTTGAAGT
CAGGGTCACGGTGGAGAGGCGCGATGCTCAGCTTCAAGTTCTGAGCTGAG
CAGTGGATAGTTGTATTGTGTATACTTCATATTTGCAATGCTCCAGTCAG
GGCTACAAGCCCCTTTCAACATTTAATTTACTTCTCAATAGACGG
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Coding sequence (CDS) from alignment at Contig_134:160042..161636+

>mRNA_12313 ID=mRNA_12313|Name=jgi.p|Trimin1|352863|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_134:160042..161636+ (Tribonema minus UTEX_B_3156 )
ATGCAATTTGTCGGCGAGCACAGGTACCTGCCCATCGCGTCCTGCTGCGA
TGGCCTCAAGCGAGCCTACCTCGAGGCCCACACCACCGCTCCAGCACTGC
AGAACGCGCCTGCGCCTGCGCCTGCACCGGCCAACGCGGATTCTCCCGCT
GACTCGGAGGCCGCGCCTGGCCCACTGGCAGCACCGGCAAACGAGGATCC
CCCCGCCGACTCAGAGGCCGCGCCTGACCCACTGGCAGCACCGACAACAT
CACTGGAGATGGCGGCCAAGCTTGGCCATGTAGACGTCTTGCGCACGCTG
TACTCCGGCTCCCGCACAGAACCTGCTGCCAGCGAGCGCATGGTGCTGCG
TGCAGCAGAGGGAGGGCAGCTTAGTGTGCTGGAGTGGCTGAGCAAGCGCC
AGAGCCCGGATCAGTGGGGCACGCGCTTGTTTAACCTCGTAGCTGGCAGC
GGTAGCGTCGAGCTGTTGGCAGAGCTGCGCCGCGGCAAATTTTCCAGTGA
TGCATCGCGGGATATCGCTGCCAACTACGAGGAGGATCATAGAAAGGGGG
GACTTCAAGGCCGCGGAGGGTTGGTCCCGGAACAACTTCAACTTGAAGTC
AGGGTCACGGTGGAGAGGCGCGATGCTCAGCTTCAAGTTCTGAGCTGA
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