mRNA_12287 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351767
Unique Name	mRNA_12287
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|351767 vs. uniprot
Match: A0A835YGV9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGV9_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.890e-62
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1

Query:   43 MYKALAVVALVGSVAAFAPVAPAVARVSSSALKAGYVPDGLSEAEWEAQKAAKAEAAAARKAKFAAQTFEDLSEWMTKRDAKFPGQIGAGHRMAKVQDREQAKPRASSFLK 375
            MYKALAVVALVGSVAAFAPVAPAVARVSSSALKAGYVPDGLSEAEWEAQKAAKAEAAAARKAKFAAQTFEDLSEWMTKRDAKFPGQIGAGHRMAKVQDREQAKPRASSFLK
Sbjct:    1 MYKALAVVALVGSVAAFAPVAPAVARVSSSALKAGYVPDGLSEAEWEAQKAAKAEAAAARKAKFAAQTFEDLSEWMTKRDAKFPGQIGAGHRMAKVQDREQAKPRASSFLK 111

[Close]

BLAST of jgi.p|Trimin1|351767 vs. uniprot
Match: A0A7S2V559_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V559_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 1.540e-17
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 1

Query:   43 MYKALAVVALVGSVAAFAPVAPAVARVSSSALKAGYVPDGLSEAEWEAQKAAKAEAAAARKAKFA-AQTFEDLSEWMTKRDAKFPGQIGAGHRMAKVQDREQAKPRASSFL 372
            M K LA++    ++AA +    A+    +     GYVPDG++EAE+EA K   AE   A K KFA  + FE L EWM  RDAK+PGQ+GAGHRMAKV+D+E+ +P A+  L
Sbjct:    1 MNKLLALIVAALALAAVSAFQAAMPATRAMTRLNGYVPDGITEAEYEAMKKKDAEKKVANKGKFAKGKKFETLDEWMIARDAKYPGQLGAGHRMAKVKDQEKPRPGAARGL 111

[Close]

BLAST of jgi.p|Trimin1|351767 vs. uniprot
Match: A0A7S2SUA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUA3_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 3.820e-16
Identity = 51/103 (49.51%), Postives = 65/103 (63.11%), Query Frame = 1

Query:   49 KALAVVALVGSVAAFAPVAP--AVARVSSSALKAGYVPDGLSEAEWEAQKAAKAEAAAARKAKFAAQTFEDLSEWMTKRDAKFPGQIGAGHRMAKVQDREQAK 351
            +AL +VALVG  AAF P  P  A  R +S+ L  GY+PDGLS+AE++  K  +  AA  RK KF    FEDL++W+  RD KFP Q G GH  AKV+  E+ K
Sbjct:    4 RALLLVALVGLAAAFTPSQPLKAAVRSTSTTLSMGYIPDGLSQAEYDKLKKKEQSAAQERKKKFKFNGFEDLTDWVRARDKKFPNQPGKGHTFAKVKGDEKGK 106

[Close]

BLAST of jgi.p|Trimin1|351767 vs. uniprot
Match: A0A6H5JUI7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUI7_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 6.460e-7
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 1

Query:   43 MYKALAVVALVGSVAAFAPVAPAV----ARVSSSALKAGYVPDGLSEAEWEAQKAAKAEAAAARKAKFAAQTFEDLSEWMTKRDAKFPGQIGAGHRMAKVQDREQAKPRASS 366
            M  A AVVAL    +AF    PA      R SS+A+ AGYVPDGL+  +WE  K  KA  AAARK + A++ FED+  +M   +A        GH  AKV +  +  P A +
Sbjct:    1 MKTAFAVVALFAGASAFNVAVPASRVTSTRASSTAVSAGYVPDGLTAQQWEDMKKEKAAKAAARKKEVASKKFEDIDTFMKGMEAG-----KRGHTFAKVDESLEKLPPAGA 107

[Close]

BLAST of jgi.p|Trimin1|351767 vs. uniprot
Match: A0A7S2CHM7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CHM7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 4.260e-6
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 1

Query:   49 KALAVVALVGSVAAFAPVA-PAVARVSSSA----LKAGYVPDGLSEAEWEAQKAAKAEAAAARKAKFAAQTFEDLSEWMTKRDAKFPGQIGAGHRMAKV 330
            KAL +  LVG  +AF P + PA   V+ ++    L  GYVPDGL+EA++ A K  +A+ A   K      + E L+EW  + D KFP Q GAGH   K+
Sbjct:    5 KALTLFLLVGLASAFLPASGPAFTAVARNSRMQPLSMGYVPDGLTEAQFNAMKKKEADKAKKNKKTKMKGSKETLTEWKAQVDKKFPNQPGAGHVYVKL 103

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351767 vs. uniprot

BLAST of jgi.p|Trimin1|351767 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5


Match Name	E-value	Identity	Description
A0A835YGV9_9STRA	2.890e-62	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A7S2V559_9STRA	1.540e-17	47.75	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A7S2SUA3_9STRA	3.820e-16	49.51	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A6H5JUI7_9PHAE	6.460e-7	41.07	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A7S2CHM7_9STRA	4.260e-6	41.41	Hypothetical protein n=1 Tax=Dictyocha speculum Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_99	contig	Contig_99:547593..550049 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351767\|estExt_Genemark1.C_Ctg_990064
Hectar predicted targeting category	chloroplast
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-01_003340.1
TranscriptId	352089
Track	FilteredModels1
ProteinId	351767

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351767	gene_12287	Tribonema minus UTEX_B_3156	gene	Contig_99 547593..550049 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351767	Trimin1\|351767\|estExt_Genemark1.C_Ctg_990064	Tribonema minus UTEX_B_3156	polypeptide	Contig_99 547635..549737 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12287_1	exon_12287_1	Tribonema minus UTEX_B_3156	exon	Contig_99 547593..547692 +
exon_12287_2	exon_12287_2	Tribonema minus UTEX_B_3156	exon	Contig_99 547959..548041 +
exon_12287_3	exon_12287_3	Tribonema minus UTEX_B_3156	exon	Contig_99 548317..548399 +
exon_12287_4	exon_12287_4	Tribonema minus UTEX_B_3156	exon	Contig_99 549626..550049 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_12287	UTR5_12287	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_99 547593..547634 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12287	CDS_12287	Tribonema minus UTEX_B_3156	CDS	Contig_99 547635..547692 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12287	UTR3_12287	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_99 549738..550049 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_99:547593..550049+
coding sequence from alignment at Contig_99:547593..550049+

spliced messenger RNA

>mRNA_12287 ID=mRNA_12287|Name=jgi.p|Trimin1|351767|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=690bp|location=Sequence derived from alignment at Contig_99:547593..550049+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCCAACTCTATTCTAGTCAAACGCATCACCGCACAAGCACCATGTACAA
GGCCCTGGCTGTTGTGGCGCTCGTCGGCTCCGTCGCCGCCTTCGCCCCTG
TGGCACCAGCGGTGGCCCGCGTCAGCTCTTCCGCACTCAAGGCTGGCTAC
GTCCCAGACGGCTTGTCCGAGGCTGAGTGGGAGGCACAGAAGGCGGCTAA
GGCAGAGGCAGCAGCAGCCAGGAAGGCCAAGTTCGCCGCACAGACATTTG
AGGACCTGTCTGAGTGGATGACCAAGCGTGACGCTAAGTTCCCCGGACAG
ATCGGCGCCGGCCACCGCATGGCCAAGGTCCAGGACAGGGAGCAGGCCAA
GCCCCGCGCGAGCTCCTTCCTCAAGTAAACGCGCCGCGCGCGCCCTCGGA
GATTACGCCATGGTTTTTGGCCAGGTTTTCGGCGCACACCTGTAGCAACG
CCCTCACCCCTCTACTGACGTCAGCACGCCGCCCACGTGTACACGCACAC
CGCCGCGGTGGCCGTCCTAGCGGCGCACGCCCGCTAACACGCGCCCTCCA
CGCCGCGCCCCATATCACAAAAGTGTGGAGAGAGGAGAGAGCCGTTTGGG
CTGGTAGACTCTCCCCGCCCCCCCGCCCCCCCTCTATTTCTGTATAAAGG
TTTATTAATGTAATGGGTGCCTCTGTGGGGCCCGCCCCTG

protein sequence of jgi.p|Trimin1|351767

>Trimin1|351767|estExt_Genemark1.C_Ctg_990064 ID=Trimin1|351767|estExt_Genemark1.C_Ctg_990064|Name=jgi.p|Trimin1|351767|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=112bp
MYKALAVVALVGSVAAFAPVAPAVARVSSSALKAGYVPDGLSEAEWEAQK
AAKAEAAAARKAKFAAQTFEDLSEWMTKRDAKFPGQIGAGHRMAKVQDRE
QAKPRASSFLK*

mRNA from alignment at Contig_99:547593..550049+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12287 ID=mRNA_12287|Name=jgi.p|Trimin1|351767|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2457bp|location=Sequence derived from alignment at Contig_99:547593..550049+ (Tribonema minus UTEX_B_3156 )
TGCCAACTCTATTCTAGTCAAACGCATCACCGCACAAGCACCATGTACAA
GGCCCTGGCTGTTGTGGCGCTCGTCGGCTCCGTCGCCGCCTTCGCCCCTG
GTGAGTGGCGCTGGCAGCGGCAGCACATTTCTGCGAGGTTTCCATGTTGT
AGTAGGGGCACGCATACACGGAGGCGCGCCTCTGTAGCGCACGGCGCTGG
ATGTGCTTGCTGAGACAGCTGGAAGGATGCGTGGACCTGTTGTTGGAGCT
CCTGCGCTGGGCGCAGTGTCCTCTTGCATGTGTTATCTTAGTTTTAGGAG
ATCGGCCCACACTTCAAGCGCGGCGGCATTGTTTCTAATGTGCTCGCTGC
TCTCTGCCTGCTGCAGTGGCACCAGCGGTGGCCCGCGTCAGCTCTTCCGC
ACTCAAGGCTGGCTACGTCCCAGACGGCTTGTCCGAGGCTGAGTGGGAGG
TGCGTGTTATTTCTGCTTTCCAAGCCTTTTGGTGTTTGCTCTCGAACGTC
TTGTTCTCGATGCCGCAGCTAGCTGCTCCGGATCCGCTGAAGGAGCATGG
GCGTAGCGCTCGCGTCATTAGGACGCGGCTTTCCTACAGTGTTGTCGATG
CGCATGCTCCTTTTGACGGCCTGTGAGGATGAGCTGGCGCATGTTCTAAT
GGCTTCTCTGATCTTCAATCTCTACTCTTCTGGTGCTGTTGTGGCTGCTG
TGGTTGTACTTCCTCACGAAACAGGCACAGAAGGCGGCTAAGGCAGAGGC
AGCAGCAGCCAGGAAGGCCAAGTTCGCCGCACAGACATTTGAGGACCTGT
CTGAGTGGTGAGTTCCCGGAAAGATACATATATCGTCAGCGCGAAGTCTC
GTTCGGTTTCCGGGCGAGCCGTAATCTTAGTGTAATTGATTGCACTCTGG
AGCCTCCAGAGTCGCGAGCGCGCCTGGTACGATTGATGTTTCGTGGGTCT
GACCTTCAGCCGCGTGATATGGTCAACAGTCTCAGCTCTCACCAGAAGCT
GTGATGCGTGTGGTGTATTCAGTGCCAACCGAATGCAAATCAGGGCTTGC
CCATGGCACCCCATCTCATGGGCTTTGGCTGATGGAGAGTGCGGTCTCTG
AGGGTCTAGCCTAGGAATTCAACTCGTGTTTCCAGCAGTTATTGCGAATT
TTACCACAGTAGATCACCACAGCTGTGATCTTTGTGGTGCCCACTTGGCG
TGGCTCACCAGTGAAGTCAACCGTAGCTGCGTAACACTGATAAAAACAGC
TGTGATAGACCACACTCAAAATTTCCCCGGCACAGTTAGCTGGTTGCGTG
GGGCGAGAAGCATTGATTTTTATAAAGGGGAACATGGTGTTGCTGCCAGC
CACTCTACGCATCTACCTGATGACAGCATTGTTCTGAGCGCCCACTTTAA
GAATTGGTTTCACACAGCAGAGTCAAAGTCAGGGACATCCGGCAGTGTCG
TGCGTACACACCGATTTAAATTGTTGGCATCATGACTTTTCCAACATCAC
TTGCAGCGCCTTCGGCTACAGATGGCGAAGTGCGGTGGTGGTGCGCACTC
AGAGTCTGCAGATGCTCACTGGTAATTTACGCATGTCACTGAAGGTTGCC
GCTGTGCAGCGTTGTCAAGTATGTTGTAATTGCTCCGCGCTTAAGTATGT
AGCAGGTGTCAGCCCAGTCTCTGGACCCATCGACAAAGCAGGCACCACGA
CGCGGCGACGTTCTCTTCTTTTTTGGCTGGCTGCTCCCTTGCAGTTCAGC
ACACCATTCAGTTACTATCATCGCCAAGCCTTGTATTTCTGCCGCCACAC
ACATCCTCAATGCGCACGGTGGCGTTGAAGTTAAGCCTGTAAACCCCAGC
TGTGTGAAATGGAAGCAAGCGGATTGTTGGGGACAAATTTACCATCTTTG
TCCGCATGCCACAGGAGTGCTGTCATCAGCCGCTGGAATGGGCGCTCAAC
ATCCAGGCAGAACAAATGTATCGCATGCGATGAACACACGGCCTCACACA
CCCCTTTGCTCTCCTCCCATGCGCCCCCTGCAGGATGACCAAGCGTGACG
CTAAGTTCCCCGGACAGATCGGCGCCGGCCACCGCATGGCCAAGGTCCAG
GACAGGGAGCAGGCCAAGCCCCGCGCGAGCTCCTTCCTCAAGTAAACGCG
CCGCGCGCGCCCTCGGAGATTACGCCATGGTTTTTGGCCAGGTTTTCGGC
GCACACCTGTAGCAACGCCCTCACCCCTCTACTGACGTCAGCACGCCGCC
CACGTGTACACGCACACCGCCGCGGTGGCCGTCCTAGCGGCGCACGCCCG
CTAACACGCGCCCTCCACGCCGCGCCCCATATCACAAAAGTGTGGAGAGA
GGAGAGAGCCGTTTGGGCTGGTAGACTCTCCCCGCCCCCCCGCCCCCCCT
CTATTTCTGTATAAAGGTTTATTAATGTAATGGGTGCCTCTGTGGGGCCC
GCCCCTG

Coding sequence (CDS) from alignment at Contig_99:547593..550049+

>mRNA_12287 ID=mRNA_12287|Name=jgi.p|Trimin1|351767|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=336bp|location=Sequence derived from alignment at Contig_99:547593..550049+ (Tribonema minus UTEX_B_3156 )
ATGTACAAGGCCCTGGCTGTTGTGGCGCTCGTCGGCTCCGTCGCCGCCTT
CGCCCCTGTGGCACCAGCGGTGGCCCGCGTCAGCTCTTCCGCACTCAAGG
CTGGCTACGTCCCAGACGGCTTGTCCGAGGCTGAGTGGGAGGCACAGAAG
GCGGCTAAGGCAGAGGCAGCAGCAGCCAGGAAGGCCAAGTTCGCCGCACA
GACATTTGAGGACCTGTCTGAGTGGATGACCAAGCGTGACGCTAAGTTCC
CCGGACAGATCGGCGCCGGCCACCGCATGGCCAAGGTCCAGGACAGGGAG
CAGGCCAAGCCCCGCGCGAGCTCCTTCCTCAAGTAA