mRNA_12242 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351740
Unique NamemRNA_12242
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351740 vs. uniprot
Match: A0A835YGS7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGS7_9STRA)

HSP 1 Score: 229 bits (585), Expect = 6.020e-74
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 MSNTEEKLVSYAEFNQLLFKREIASAKFYGSKYDRCVLTLLDGTEARIGEGYPRESPATDESPLKVVAQLRNAGVPYKVDFNLRGYTYLKSYKSRETLAAEDRQRDEDSRIETRMAQ 351
            MSNTEEKLVSYAEFNQLLFKREIASAKFYGSKYDRCVLTLLDGTEARIGEGYPRESPATDESPLKVVAQLRNAGVPYKVDFNLRGYTYLKSYKSRETLAAEDRQRDEDSRIETRMAQ
Sbjct:    1 MSNTEEKLVSYAEFNQLLFKREIASAKFYGSKYDRCVLTLLDGTEARIGEGYPRESPATDESPLKVVAQLRNAGVPYKVDFNLRGYTYLKSYKSRETLAAEDRQRDEDSRIETRMAQ 117
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BLAST of jgi.p|Trimin1|351740 vs. uniprot
Match: D7FGR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGR8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.720e-25
Identity = 53/110 (48.18%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:   16 EKLVSYAEFNQLLFKREIASAKFYGSKYDRCVLTLLDGTEARIGEGYPRESPATDESPLKVVAQLRNAGVPYKVDFNLRGYTYLKSYKSRETLAAEDRQRDEDSRIETRM 345
            +K VS+ +F + L K E+A  +F+G  +D+ ++ L DGT A IGEGYP E   +D+SP+KVV  LRNAGVP+  +F +  Y+  KSYKS ETL AE+RQ+ ED+ ++  M
Sbjct:  153 DKEVSFEDFERALLKGEVARCEFFGPNFDKAIIVLKDGTRALIGEGYPEERAFSDDSPMKVVGLLRNAGVPFTTEFRMAKYSKPKSYKSSETLEAENRQKSEDAVLDRLM 262
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BLAST of jgi.p|Trimin1|351740 vs. uniprot
Match: A0A6H5JKU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU5_9PHAE)

HSP 1 Score: 110 bits (274), Expect = 2.210e-25
Identity = 53/110 (48.18%), Postives = 76/110 (69.09%), Query Frame = 1 
Query:   16 EKLVSYAEFNQLLFKREIASAKFYGSKYDRCVLTLLDGTEARIGEGYPRESPATDESPLKVVAQLRNAGVPYKVDFNLRGYTYLKSYKSRETLAAEDRQRDEDSRIETRM 345
            +K VS  +F + L K E+A  +F+G  +D+ ++ L DGT A IGEGYP+E   +D+SP+KVV  LRNAGVP+  +F +  Y+  KSYKS ETL AE+RQ+ ED+ ++  M
Sbjct:  149 DKEVSLEDFERALLKGEVARCEFFGPNFDKAIIVLKDGTRALIGEGYPQERAFSDDSPMKVVGLLRNAGVPFTTEFRMAKYSKPKSYKSSETLEAENRQKSEDATLDRLM 258
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BLAST of jgi.p|Trimin1|351740 vs. uniprot
Match: A0A0G4GED3_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4GED3_VITBC)

HSP 1 Score: 68.2 bits (165), Expect = 2.020e-10
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   25 VSYAEFNQLLFKRE----IASAKFYGSKYDRCVLTLLDGTEARIGEGYPRESPATDESPLKVVAQLRNAGVPYKVDFNLRGY 258
            +S+A+F + +        I    F GS+ +RCV+   DGT  R+GEGYPRESP + E+P  VVA++R   +PY    NL  Y
Sbjct:   68 LSFADFMEQIRSNAGSNPITRVTFIGSRAERCVVLYADGTRKRLGEGYPRESPTSQETPQWVVARVRELRIPYDFTINLGRY 149
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BLAST of jgi.p|Trimin1|351740 vs. uniprot
Match: A0A5J4Z3K9_PORPP (Uncharacterized protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z3K9_PORPP)

HSP 1 Score: 59.7 bits (143), Expect = 1.920e-7
Identity = 29/61 (47.54%), Postives = 41/61 (67.21%), Query Frame = 1 
Query:   67 IASAKFYGSKYDRCVLTLLDGTEARIGEGYPRESPATDESPLKVVAQLRNAGVPYKVDFNL 249
            I   +F G++Y+R  +    G +  +GEGYP+ESP T ESPL V A+LR+A +P+ VDF L
Sbjct:   96 IERVEFKGTQYNRAYV-YAGGKKLLLGEGYPKESPITPESPLAVQAKLRDAKIPFSVDFGL 155
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351740 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A835YGS7_9STRA6.020e-74100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FGR8_ECTSI1.720e-2548.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKU5_9PHAE2.210e-2548.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4GED3_VITBC2.020e-1041.46Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A5J4Z3K9_PORPP1.920e-747.54Uncharacterized protein n=1 Tax=Porphyridium purpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_99contigContig_99:150473..152163 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351740|estExt_Genemark1.C_Ctg_990020
Max annot lvl2759|Eukaryota
EggNOG OGs2F0SQ@1|root,2T1WE@2759|Eukaryota
Evalue1.87e-28
Seed ortholog2880.D7FGR8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_001120.1
TranscriptId352062
TrackFilteredModels1
ProteinId351740
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351740gene_12242Tribonema minus UTEX_B_3156 geneContig_99 150473..152163 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12242_3exon_12242_3Tribonema minus UTEX_B_3156 exonContig_99 150473..151103 -
exon_12242_2exon_12242_2Tribonema minus UTEX_B_3156 exonContig_99 151601..151723 -
exon_12242_1exon_12242_1Tribonema minus UTEX_B_3156 exonContig_99 152152..152163 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12242UTR3_12242Tribonema minus UTEX_B_3156 three_prime_UTRContig_99 150473..150884 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12242CDS_12242Tribonema minus UTEX_B_3156 CDSContig_99 152152..152163 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351740Trimin1|351740|estExt_Genemark1.C_Ctg_990020Tribonema minus UTEX_B_3156 polypeptideContig_99 150885..152163 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12242 ID=mRNA_12242|Name=jgi.p|Trimin1|351740|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=766bp|location=Sequence derived from alignment at Contig_99:150473..152163- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCAACACTGAGGAGAAGCTAGTGAGCTACGCTGAGTTCAACCAGCT
GCTGTTCAAGAGAGAGATCGCCAGCGCCAAGTTCTACGGCAGCAAGTACG
ACCGATGCGTGCTCACGCTGCTCGATGGCACGGAGGCGCGCATCGGCGAG
GGGTACCCCCGGGAATCCCCTGCCACCGACGAATCCCCCCTGAAGGTGGT
GGCGCAGCTGAGAAATGCCGGCGTCCCCTACAAGGTTGACTTCAACTTGC
GCGGCTACACGTACCTAAAGTCGTACAAGTCCAGGGAGACGCTCGCCGCG
GAGGACCGGCAGCGCGACGAGGACTCTAGAATAGAGACGAGGATGGCGCA
ATGAGAGCGCGATTACAGTCCCAAAGTAATTATCACAAGAAACGCGCAAT
AATTTATGCACACTTGAAGTCGTGGCAGTGTTTGAGACGACCCACGCAGG
CTGCGCAATCGTGATGCGCGCCGCGGCAGCATTCATATTTGGCTGCAGCT
GCAGTTGCAGCGCGGGTTGCCGCGCCGCTGTCTGTCTGCGGCTGTTGCAG
TGAAAGCTGACGGATGCGCGGTCTAAGGGAATTTCTTGAGGCAAGGGCGC
CCGCCACTCTGAACCTGCTACCGTAAAGCGAGGCCGCTCAGTGGCCCGCA
GCATTGCAGCATTTCTCAGCAGCCATTAGTCTGCCCTAGAGACGCGAGAG
CGTGACAGACGTTGCCATCGGGCGTGCAACTGCCGAGCAAGTGAATCACA
AAACAATGTTTGAAAA
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protein sequence of jgi.p|Trimin1|351740

>Trimin1|351740|estExt_Genemark1.C_Ctg_990020 ID=Trimin1|351740|estExt_Genemark1.C_Ctg_990020|Name=jgi.p|Trimin1|351740|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
MSNTEEKLVSYAEFNQLLFKREIASAKFYGSKYDRCVLTLLDGTEARIGE
GYPRESPATDESPLKVVAQLRNAGVPYKVDFNLRGYTYLKSYKSRETLAA
EDRQRDEDSRIETRMAQ*
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mRNA from alignment at Contig_99:150473..152163-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12242 ID=mRNA_12242|Name=jgi.p|Trimin1|351740|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1691bp|location=Sequence derived from alignment at Contig_99:150473..152163- (Tribonema minus UTEX_B_3156 )
ATGAGCAACACTGTGTGCGCGTGTGTCTGGTGTCTGACGAGTCAACCAAA
ACTGCAAGTGTTTGTTTCAGGAGAGTTGTTGAAGTCCACCCTGGCCCTCT
CACACCTCGTATCAACATCATGGCGCCTGCAAGAAATCAGAGCAGGAGCG
CCGCTGCAGGCGTGGTTCTCGCTGCAGTGGCAGCGGGGCTGCTATGCGGC
ACACAGGCGTTTACGACAGTTCACAAAATGACCTTGACAACAGCAGGCGT
TCCTGCGGCGGCGGCGCCTTCGTTGCACAGCCGACGCGCTGTCCTTCAAC
GCACAGCTGCCTCTGCAGTGGGCGCTGTGGGACTCTGCTTTGGTGGGGGG
AGCTCGGCTTTGGCGGAGGACGTTGAGAGCCCCGCCGCTGCTGTGGAAGG
ATCTGATGCAGTAGCCTCTGCCGCTGCTGCGCCTACAGAGGAGGAGAAGC
TAGTGAGCTACGCTGAGTTCAACCAGCTGCTGTTCAAGAGAGAGATCGCC
AGCGCCAAGTTCTACGGCAGCAAGTACGACCGATGCGTGCTCACGCTGCT
CGATGGCACGGAGGTGAGTTGAATCACACGTGCATTCCCTCGTGCACCAT
GTGCATGTACGTTGCTGATGTGCCATTGTGCCACGTGTTTGTAGGAATCG
GCCAGAGTATGCACACATCGCACATTGAAACGACCACAAGCTGCTTTGAC
AGGGCATCTTTCTTGCTCGCCTGTTCTGTAGTGGTGCCATGGGGACATGA
GTCAAGCTGCAACTGCTTGGGTCATGCATTAACAGCTGTGTCGGCCTTCT
CGATTATGGCATTGGTCGGGTTGCGAAATGCGCTGATACTGCGTTGCGCC
CCGCTCTGAGCATCACCCTGCACCAAGCTTGGGCCCCCCGACTAGGTTCG
CTCTTTTGCAGAAACCGCCTGGACACAGCCAAGAACAAGACATTTGTATA
TTTGGCCGGTACATTTGTGTGTGTCTTCACACTGTCCCTGTCAAAGCAAG
AATATGTACGTTTGACCGGCCCATGTGTGTGCGCCTACGCACTGTCCCTG
TGTGCTGCAGGCGCGCATCGGCGAGGGGTACCCCCGGGAATCCCCTGCCA
CCGACGAATCCCCCCTGAAGGTGGTGGCGCAGCTGAGAAATGCCGGCGTC
CCCTACAAGGTTGACTTCAACTTGCGCGGCTACACGTACCTAAAGTCGTA
CAAGTCCAGGGAGACGCTCGCCGCGGAGGACCGGCAGCGCGACGAGGACT
CTAGAATAGAGACGAGGATGGCGCAATGAGAGCGCGATTACAGTCCCAAA
GTAATTATCACAAGAAACGCGCAATAATTTATGCACACTTGAAGTCGTGG
CAGTGTTTGAGACGACCCACGCAGGCTGCGCAATCGTGATGCGCGCCGCG
GCAGCATTCATATTTGGCTGCAGCTGCAGTTGCAGCGCGGGTTGCCGCGC
CGCTGTCTGTCTGCGGCTGTTGCAGTGAAAGCTGACGGATGCGCGGTCTA
AGGGAATTTCTTGAGGCAAGGGCGCCCGCCACTCTGAACCTGCTACCGTA
AAGCGAGGCCGCTCAGTGGCCCGCAGCATTGCAGCATTTCTCAGCAGCCA
TTAGTCTGCCCTAGAGACGCGAGAGCGTGACAGACGTTGCCATCGGGCGT
GCAACTGCCGAGCAAGTGAATCACAAAACAATGTTTGAAAA
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Coding sequence (CDS) from alignment at Contig_99:150473..152163-

>mRNA_12242 ID=mRNA_12242|Name=jgi.p|Trimin1|351740|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_99:150473..152163- (Tribonema minus UTEX_B_3156 )
ATGAGCAACACTGAGGAGAAGCTAGTGAGCTACGCTGAGTTCAACCAGCT
GCTGTTCAAGAGAGAGATCGCCAGCGCCAAGTTCTACGGCAGCAAGTACG
ACCGATGCGTGCTCACGCTGCTCGATGGCACGGAGGCGCGCATCGGCGAG
GGGTACCCCCGGGAATCCCCTGCCACCGACGAATCCCCCCTGAAGGTGGT
GGCGCAGCTGAGAAATGCCGGCGTCCCCTACAAGGTTGACTTCAACTTGC
GCGGCTACACGTACCTAAAGTCGTACAAGTCCAGGGAGACGCTCGCCGCG
GAGGACCGGCAGCGCGACGAGGACTCTAGAATAGAGACGAGGATGGCGCA
ATGA
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