mRNA_12239 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: A0A836C7H7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7H7_9STRA) HSP 1 Score: 129 bits (325), Expect = 3.010e-37 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1
Query: 1 MVAAAAVXXXXXXXXXXXXXXXXXXXXXXXGAPLWFRALTHCTAVPAARSRPHTRQHSAHLAGRPVASAGARAPLPPMLLSAEASSKGLPRAAALA 288
MVAAAAVXXXXXXXXXXXXXXXXXXXXXXXGAPLWFRALTHCTAVPAARSRPHTRQHSAHLAGRPVASAGARAPLPPMLLSAEASSKGLPRAAALA
Sbjct: 1 MVAAAAVXXXXXXXXXXXXXXXXXXXXXXXGAPLWFRALTHCTAVPAARSRPHTRQHSAHLAGRPVASAGARAPLPPMLLSAEASSKGLPRAAALA 96
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: A0A835YHH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHH8_9STRA) HSP 1 Score: 762 bits (1968), Expect = 2.710e-270 Identity = 536/538 (99.63%), Postives = 536/538 (99.63%), Query Frame = 3
Query: 174 MRRSLIDSKAAIQTHGQGRCCWSPERCVAAXXXXXXSPEGNSRRKGSCLCCGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVHFAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLKPAFFAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASACGGSGEAGTCDTAXXXXXAPVAALSEALAQLKC 1787
MRRSLIDSKAAIQTHGQGRCCWSPERCVAAXXXXXXSPEGNSRRKGSCLCCGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVHFAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLKPAFFAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASACGGSGEAGTCDTAXXXXX VAALSEALAQLKC
Sbjct: 1 MRRSLIDSKAAIQTHGQGRCCWSPERCVAAXXXXXXSPEGNSRRKGSCLCCGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVHFAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLKPAFFAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASACGGSGEAGTCDTAXXXXXXXVAALSEALAQLKC 538
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: A0A836CAN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN9_9STRA) HSP 1 Score: 202 bits (515), Expect = 1.090e-55 Identity = 140/299 (46.82%), Postives = 165/299 (55.18%), Query Frame = 3
Query: 528 RSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHT-GKEGRSSS--LSDDEEELHTEGEGSSSDDE---ARA--------------------EEVVRQKRMISLERRR---ALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRIT 1337
RS++VDL+R+PYALFHKD+Y P EYSPK + +EG + S DEE+L TEGE SSS+D+ AR +R S E RR A RP+FSG+WKR+R+EGFIELLAFSGVPRKAAL+AAQ+R VHIIDHDDDYFRLI+KNGL K D HYII EK L + + + AA +EMIAVRTLEDGG LVLQQIVR+PATGEEARARHIFKR+T
Sbjct: 16 RSVEVDLSRSPYALFHKDFYFKTHPQEYSPKSSRAREGAHAPNWTSSDEEDLATEGELSSSEDDDCGARGGGSSXXXXXXXXXXXXXXXXXXXAMHRRTPSAELRRRAAAARPDFSGVWKRARVEGFIELLAFSGVPRKAALSAAQRRAVHIIDHDDDYFRLIVKNGLTKVDGHYII------EK---------LKFXXXXXXXXXXXXIAAA------------------------------------------AAPLEMIAVRTLEDGGATLVLQQIVRRPATGEEARARHIFKRLT 257
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: D7G864_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G864_ECTSI) HSP 1 Score: 153 bits (387), Expect = 7.440e-37 Identity = 122/381 (32.02%), Postives = 169/381 (44.36%), Query Frame = 3
Query: 441 ETSKRPKLSVHFAEDPTVVLGYADP--DYDRRSIKVDLTRTPYALFHKDYYLMNR----------------PA-----------------------------------EYSPKHTGKEGRS----------SSLSDDEEELHT--EGEGSSSDDEARAEE--------------VVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARN 1346
E P+ +V F P + AD DY+RRSI VDL++TP+ALF +D +M + PA + SP E R S S + E HT E + + +D + A++ VV Q+++ A P F G+WKR+ EG+ ELL SGVP++A A +K PVHIIDHD YFRLI+KNGL K D + IGDEP+ + G YEV ++W H + +GR + L LTSI A E+IA+R+L +GGD +VL QIVR+PA G E RA+H FKR+T+++
Sbjct: 67 ELDASPRRTVRFPHQPISAIWVADSVLDYNRRSIVVDLSKTPFALFRRDAVMMKQARTSVDPSAPLPPPGPPALSPPRLRAAAAACXXXXXXXXXRSPVGSSDAAADSDASPSPPSAERRRPGGDRLAKLWESESSESSEGHTDLETDDTETDWHSDADDCCSVGSGTEEAPPCVVEQQQLRRGSNSEAGSPAFYGVWKRTSSEGYEELLLSSGVPKRAVAMAMKKHPVHIIDHDGSYFRLIVKNGLSKVDNTFFIGDEPKQDIIGKQSYEVSMNWAHLSGHGREDELALTSICHQAGE---------------------------------------EVIAIRSLHEGGDQMVLTQIVRRPAEGYEVRAKHFFKRVTSKS 408
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: A0A835ZCE6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE6_9STRA) HSP 1 Score: 104 bits (259), Expect = 8.450e-20 Identity = 68/137 (49.64%), Postives = 73/137 (53.28%), Query Frame = 3
Query: 993 KSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVA 1403
K+ TDYEVVLDWGHGTANG AE LVL S++ NAK GG S AAAIE+IAVRTLEDGGDVLVL Q P + RA HI R R G KP PRG KPAVA
Sbjct: 55 KTSTTDYEVVLDWGHGTANGPAEPLVLASVTFNAKAGGDSSGGG---------------------------AAAIELIAVRTLEDGGDVLVLHQTGEWPIIRKRMRAPHIQARRRPR--GTHVVKPCMPRGRKPAVA 162 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12239 ID=mRNA_12239|Name=jgi.p|Trimin1|351739|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=291bp|location=Sequence derived from alignment at Contig_99:135422..137087+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGTGGCGGCGGCGGCGGTGGCCGCAGCAGCGGTGGCGGCGGCAGCGGTback to top protein sequence of jgi.p|Trimin1|351739 >Trimin1|351739|estExt_Genemark1.C_Ctg_990017 ID=Trimin1|351739|estExt_Genemark1.C_Ctg_990017|Name=jgi.p|Trimin1|351739|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=97bp MVAAAAVAAAAVAAAAVAAAAVAAAAAAAAGAPLWFRALTHCTAVPAARSback to top mRNA from alignment at Contig_99:135422..137087+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12239 ID=mRNA_12239|Name=jgi.p|Trimin1|351739|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1666bp|location=Sequence derived from alignment at Contig_99:135422..137087+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_99:135422..137087+ >mRNA_12239 ID=mRNA_12239|Name=jgi.p|Trimin1|351739|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=291bp|location=Sequence derived from alignment at Contig_99:135422..137087+ (Tribonema minus UTEX_B_3156 )back to top |