mRNA_12239 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351739
Unique NamemRNA_12239
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: A0A836C7H7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7H7_9STRA)

HSP 1 Score: 129 bits (325), Expect = 3.010e-37
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1
Query:    1 MVAAAAVXXXXXXXXXXXXXXXXXXXXXXXGAPLWFRALTHCTAVPAARSRPHTRQHSAHLAGRPVASAGARAPLPPMLLSAEASSKGLPRAAALA 288
            MVAAAAVXXXXXXXXXXXXXXXXXXXXXXXGAPLWFRALTHCTAVPAARSRPHTRQHSAHLAGRPVASAGARAPLPPMLLSAEASSKGLPRAAALA
Sbjct:    1 MVAAAAVXXXXXXXXXXXXXXXXXXXXXXXGAPLWFRALTHCTAVPAARSRPHTRQHSAHLAGRPVASAGARAPLPPMLLSAEASSKGLPRAAALA 96          
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: A0A835YHH8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHH8_9STRA)

HSP 1 Score: 762 bits (1968), Expect = 2.710e-270
Identity = 536/538 (99.63%), Postives = 536/538 (99.63%), Query Frame = 3
Query:  174 MRRSLIDSKAAIQTHGQGRCCWSPERCVAAXXXXXXSPEGNSRRKGSCLCCGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVHFAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLKPAFFAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASACGGSGEAGTCDTAXXXXXAPVAALSEALAQLKC 1787
            MRRSLIDSKAAIQTHGQGRCCWSPERCVAAXXXXXXSPEGNSRRKGSCLCCGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVHFAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLKPAFFAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASACGGSGEAGTCDTAXXXXX  VAALSEALAQLKC
Sbjct:    1 MRRSLIDSKAAIQTHGQGRCCWSPERCVAAXXXXXXSPEGNSRRKGSCLCCGRTGTIPQTAASKAAKPLRRAMLPPRMQMWALEGLCLVETSKRPKLSVHFAEDPTVVLGYADPDYDRRSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHTGKEGRSSSLSDDEEELHTEGEGSSSDDEARAEEVVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQLKPAFFAAPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASACGGSGEAGTCDTAXXXXXXXVAALSEALAQLKC 538          
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: A0A836CAN9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAN9_9STRA)

HSP 1 Score: 202 bits (515), Expect = 1.090e-55
Identity = 140/299 (46.82%), Postives = 165/299 (55.18%), Query Frame = 3
Query:  528 RSIKVDLTRTPYALFHKDYYLMNRPAEYSPKHT-GKEGRSSS--LSDDEEELHTEGEGSSSDDE---ARA--------------------EEVVRQKRMISLERRR---ALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRIT 1337
            RS++VDL+R+PYALFHKD+Y    P EYSPK +  +EG  +    S DEE+L TEGE SSS+D+   AR                           +R  S E RR   A RP+FSG+WKR+R+EGFIELLAFSGVPRKAAL+AAQ+R VHIIDHDDDYFRLI+KNGL K D HYII      EK         L +            +  +                                          AA +EMIAVRTLEDGG  LVLQQIVR+PATGEEARARHIFKR+T
Sbjct:   16 RSVEVDLSRSPYALFHKDFYFKTHPQEYSPKSSRAREGAHAPNWTSSDEEDLATEGELSSSEDDDCGARGGGSSXXXXXXXXXXXXXXXXXXXAMHRRTPSAELRRRAAAARPDFSGVWKRARVEGFIELLAFSGVPRKAALSAAQRRAVHIIDHDDDYFRLIVKNGLTKVDGHYII------EK---------LKFXXXXXXXXXXXXIAAA------------------------------------------AAPLEMIAVRTLEDGGATLVLQQIVRRPATGEEARARHIFKRLT 257          
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: D7G864_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G864_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 7.440e-37
Identity = 122/381 (32.02%), Postives = 169/381 (44.36%), Query Frame = 3
Query:  441 ETSKRPKLSVHFAEDPTVVLGYADP--DYDRRSIKVDLTRTPYALFHKDYYLMNR----------------PA-----------------------------------EYSPKHTGKEGRS----------SSLSDDEEELHT--EGEGSSSDDEARAEE--------------VVRQKRMISLERRRALRPNFSGIWKRSRIEGFIELLAFSGVPRKAALAAAQKRPVHIIDHDDDYFRLIIKNGLVKSDAHYIIGDEPRIEKSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARN 1346
            E    P+ +V F   P   +  AD   DY+RRSI VDL++TP+ALF +D  +M +                PA                                   + SP     E R            S S +  E HT  E + + +D  + A++              VV Q+++       A  P F G+WKR+  EG+ ELL  SGVP++A   A +K PVHIIDHD  YFRLI+KNGL K D  + IGDEP+ +  G   YEV ++W H + +GR + L LTSI   A                                         E+IA+R+L +GGD +VL QIVR+PA G E RA+H FKR+T+++
Sbjct:   67 ELDASPRRTVRFPHQPISAIWVADSVLDYNRRSIVVDLSKTPFALFRRDAVMMKQARTSVDPSAPLPPPGPPALSPPRLRAAAAACXXXXXXXXXRSPVGSSDAAADSDASPSPPSAERRRPGGDRLAKLWESESSESSEGHTDLETDDTETDWHSDADDCCSVGSGTEEAPPCVVEQQQLRRGSNSEAGSPAFYGVWKRTSSEGYEELLLSSGVPKRAVAMAMKKHPVHIIDHDGSYFRLIVKNGLSKVDNTFFIGDEPKQDIIGKQSYEVSMNWAHLSGHGREDELALTSICHQAGE---------------------------------------EVIAIRSLHEGGDQMVLTQIVRRPAEGYEVRAKHFFKRVTSKS 408          
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Match: A0A835ZCE6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCE6_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.450e-20
Identity = 68/137 (49.64%), Postives = 73/137 (53.28%), Query Frame = 3
Query:  993 KSGATDYEVVLDWGHGTANGRAESLVLTSISVNAKTGGSDSNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAIEMIAVRTLEDGGDVLVLQQIVRKPATGEEARARHIFKRITARNSGALSAKPSTPRGGKPAVA 1403
            K+  TDYEVVLDWGHGTANG AE LVL S++ NAK GG  S                              AAAIE+IAVRTLEDGGDVLVL Q    P   +  RA HI  R   R  G    KP  PRG KPAVA
Sbjct:   55 KTSTTDYEVVLDWGHGTANGPAEPLVLASVTFNAKAGGDSSGGG---------------------------AAAIELIAVRTLEDGGDVLVLHQTGEWPIIRKRMRAPHIQARRRPR--GTHVVKPCMPRGRKPAVA 162          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351739 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836C7H7_9STRA3.010e-37100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|351739 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YHH8_9STRA2.710e-27099.63Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CAN9_9STRA1.090e-5546.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G864_ECTSI7.440e-3732.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCE6_9STRA8.450e-2049.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_99contigContig_99:135422..137087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351739|estExt_Genemark1.C_Ctg_990017
Hectar predicted targeting categorysignal peptide
TranscriptId352061
TrackFilteredModels1
ProteinId351739
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351739gene_12239Tribonema minus UTEX_B_3156 geneContig_99 135422..137087 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12239_1exon_12239_1Tribonema minus UTEX_B_3156 exonContig_99 135422..135511 +
exon_12239_2exon_12239_2Tribonema minus UTEX_B_3156 exonContig_99 135611..135703 +
exon_12239_3exon_12239_3Tribonema minus UTEX_B_3156 exonContig_99 136887..136984 +
exon_12239_4exon_12239_4Tribonema minus UTEX_B_3156 exonContig_99 137078..137087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12239CDS_12239Tribonema minus UTEX_B_3156 CDSContig_99 135422..135511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351739Trimin1|351739|estExt_Genemark1.C_Ctg_990017Tribonema minus UTEX_B_3156 polypeptideContig_99 135422..137087 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12239 ID=mRNA_12239|Name=jgi.p|Trimin1|351739|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=291bp|location=Sequence derived from alignment at Contig_99:135422..137087+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCGGCGGCGGCGGTGGCCGCAGCAGCGGTGGCGGCGGCAGCGGT
GGCGGCAGCAGCGGTGGCGGCGGCAGCGGCGGCAGCGGCTGGCGCGCCGC
TGTGGTTCCGCGCGCTGACACACTGCACGGCAGTGCCGGCGGCACGGTCG
CGCCCGCACACGCGGCAGCACTCAGCGCATCTGGCGGGGCGCCCTGTGGC
GTCCGCAGGCGCGCGCGCACCGCTGCCTCCTATGCTGCTGAGCGCTGAAG
CATCGTCGAAGGGTCTGCCGCGCGCCGCAGCCCTCGCGTAG
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protein sequence of jgi.p|Trimin1|351739

>Trimin1|351739|estExt_Genemark1.C_Ctg_990017 ID=Trimin1|351739|estExt_Genemark1.C_Ctg_990017|Name=jgi.p|Trimin1|351739|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=97bp
MVAAAAVAAAAVAAAAVAAAAVAAAAAAAAGAPLWFRALTHCTAVPAARS
RPHTRQHSAHLAGRPVASAGARAPLPPMLLSAEASSKGLPRAAALA*
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mRNA from alignment at Contig_99:135422..137087+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12239 ID=mRNA_12239|Name=jgi.p|Trimin1|351739|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1666bp|location=Sequence derived from alignment at Contig_99:135422..137087+ (Tribonema minus UTEX_B_3156 )
ATGGTGGCGGCGGCGGCGGTGGCCGCAGCAGCGGTGGCGGCGGCAGCGGT GGCGGCAGCAGCGGTGGCGGCGGCAGCGGCGGCAGCGGCTGTACAAAGCG CATTGTCACGGCGTTGCGCAGCTGGCGTGCGGCCGCCACATGCGCACCAC CAACGTCTCGTACGCATGACCGACTTGCACACGCACGAGGGCGCGCCGCT GTGGTTCCGCGCGCTGACACACTGCACGGCAGTGCCGGCGGCACGGTCGC GCCCGCACACGCGGCAGCACTCAGCGCATCTGGTCGGCACTGGCAGCAGC AGCAGCAGCGCAGCGCTCAGCTTAGGCTTGCGCGTTCACACCGCTATGGC TTGCTGCTCGCACCTTGGCGATGGTGTCGCTCTGCCCACACCGTGGTCCG ACTTGTCTATCCAATTACAAAATGCCCAGTGTGCCATCGCTCCTCTAGTC ATTAACCTGCGGCAGGCCAGGTACTGCGTAGCCTGCCATCGCAGTCGCTG GCACGTGCTCGTTGATTTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCGCA TTCATTGGTTTGCAATGTGCCGCAGGGAGATTCGGCACGTGCAGCTGAAA TCAGCATGAAATCAGCATGCGCGCACGTGCCCTACCTTCCCAGTATCAAT AATGGAGACCCAGGAATGTACATAGTTGCACTACAGCCCATTGTTCTCGC TCATCTCATTCATCTCTTCTGTCTTCTGCTGCTGCAATGCGTCATGGCGC GCGGCACAAGCTGCTGGTGTGTGCAGCAACGCGCTTGCAGCACGCCTTAC AACGGGTGAGTGATAGCATAGTGCGAAGGCCGTTTGTCTGCCGCTGATTG CACTGCACCAGCTCACAACCGCCACTTTTTTATGAGCGGACCGCTTGAAT GAGTTGTAAGACATTGCTCAGCATTGTTGCCATGCTCGTTGTCGTCAGTT TGCAGCATGCTGTTTCGGATGTGAGCGAGTGCTAACCCCGCTGTTGTCTT GCAAATGTGCATGTAGACTCTTCAGCAGCTCAACATCATCGACAAGATGC TGTGTCCATGCATGCATCGCAGTGGGCGCATCATTCACAAATATGCAGCC ACCTGCGCACTCTGCAGAGACACATCATCACCGCTAACATGTTTCAAGAC ATTGTATCATTATCTCATGTTCTGTGATGAGTGTGCCCCCAACCGCCCCC CTGTCCCCCCTCGCCTCTCCGCAACATGCTTTCAATGAGGCGCGCAATCA CCCAGACTTACCACAAACACTCAAGTCGTCGCAACAGTGCGCGCAAGCCA GTGGCGCGAAACCTGCCATCAGTCACACCGCACGGTGCAGCGCCGGCGCC CCGCTTCCGCACCGTTTGCAATTGACATTCGCAACGCAGGCGCCCACCGC GTGATGTCCACCGCCGCGTGTGCGATGGGCAGCGCGCCCGTGCTTCGCGC TGGCGCACGATGCAGGCGGGGCGCCCTGTGGCGTCCGCAGGCGCGCGCGC ACCGCTGCCTCCTATGCTGCTGAGCGCTGAAGCATCGTCGAAGGGTCTGC CGCGCGCCGCAGCGTGCGCGCCTTCGGAGGCACACTTTGCTCTGCAACTT CAGCTACATCGACGCTAGCGCTGCGTGCGCGGCTCGCACCCAACCATCAT CACCAGCCTCGCGTAG
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Coding sequence (CDS) from alignment at Contig_99:135422..137087+

>mRNA_12239 ID=mRNA_12239|Name=jgi.p|Trimin1|351739|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=291bp|location=Sequence derived from alignment at Contig_99:135422..137087+ (Tribonema minus UTEX_B_3156 )
ATGGTGGCGGCGGCGGCGGTGGCCGCAGCAGCGGTGGCGGCGGCAGCGGT
GGCGGCAGCAGCGGTGGCGGCGGCAGCGGCGGCAGCGGCTGGCGCGCCGC
TGTGGTTCCGCGCGCTGACACACTGCACGGCAGTGCCGGCGGCACGGTCG
CGCCCGCACACGCGGCAGCACTCAGCGCATCTGGCGGGGCGCCCTGTGGC
GTCCGCAGGCGCGCGCGCACCGCTGCCTCCTATGCTGCTGAGCGCTGAAG
CATCGTCGAAGGGTCTGCCGCGCGCCGCAGCCCTCGCGTAG
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