mRNA_1211 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156673
Unique NamemRNA_1211
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156673 vs. uniprot
Match: A0A836CNN8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNN8_9STRA)

HSP 1 Score: 315 bits (808), Expect = 2.160e-108
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1 
Query:    1 MLRRLECPWTSETLVQEYAHGHHTVFEYALSLASRCPDWMVAETMEAAASYGQLHVIRWWLHELRANCSLTERACEKAARSGHVAALEALADGDALWRTTTAAAAALGHLEVLHVAHQRGAPWAEGTARXXXXXXXXXXXXXXXXXXCPCNLQQLEAVATRNDVLAWLRLRHAQ 522
            MLRRLECPWTSETLVQEYAHGHHTVFEYALSLASRCPDWMVAETMEAAASYGQLHVIRWWLHELRANCSLTERACEKAARSGHVAALEALADGDALWRTTTAAAAALGHLEVLHVAHQRGAPWAEGTARXXXXXXXXXXXXXXXXXXCPCNLQQLEAVATRNDVLAWLRLRHAQ
Sbjct:    1 MLRRLECPWTSETLVQEYAHGHHTVFEYALSLASRCPDWMVAETMEAAASYGQLHVIRWWLHELRANCSLTERACEKAARSGHVAALEALADGDALWRTTTAAAAALGHLEVLHVAHQRGAPWAEGTARXXXXXXXXXXXXXXXXXXCPCNLQQLEAVATRNDVLAWLRLRHAQ 174
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156673 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNN8_9STRA2.160e-108100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:2216747..2217451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156673|e_gw1.1.306.1
Hectar predicted targeting categoryother localisation
TranscriptId156995
TrackFilteredModels1
ProteinId156673
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156673gene_1211Tribonema minus UTEX_B_3156 geneContig_1 2216747..2217451 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156673Trimin1|156673|e_gw1.1.306.1Tribonema minus UTEX_B_3156 polypeptideContig_1 2216747..2217451 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1211_2exon_1211_2Tribonema minus UTEX_B_3156 exonContig_1 2216747..2217160 -
exon_1211_1exon_1211_1Tribonema minus UTEX_B_3156 exonContig_1 2217341..2217451 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1211CDS_1211Tribonema minus UTEX_B_3156 CDSContig_1 2217341..2217451 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1211 ID=mRNA_1211|Name=jgi.p|Trimin1|156673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=525bp|location=Sequence derived from alignment at Contig_1:2216747..2217451- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGCGGAGGCTTGAGTGCCCATGGACCTCGGAGACCTTAGTACAAGA
GTATGCTCATGGGCACCACACGGTGTTCGAGTATGCACTCAGTCTGGCAA
GCAGGTGTCCGGATTGGATGGTCGCAGAGACCATGGAGGCAGCAGCATCC
TACGGCCAGCTGCACGTCATCAGGTGGTGGCTGCATGAGCTGCGTGCTAA
CTGCAGCCTGACCGAGCGCGCATGCGAGAAAGCAGCGCGCAGCGGCCATG
TTGCGGCGCTCGAAGCCCTTGCGGATGGAGATGCTCTGTGGAGGACGACC
ACAGCAGCGGCGGCCGCCTTGGGCCACCTTGAGGTGCTGCACGTTGCACA
CCAGCGTGGCGCACCCTGGGCGGAGGGGACAGCCAGAGCAGCGGCCAAGT
ACGGCCATCTGCACCTGCTGCAGTGGGCGGAGGAGCACGGATGCCCATGC
AACCTGCAGCAGCTTGAGGCTGTTGCCACCCGCAATGACGTGCTGGCGTG
GCTTCGCTTGCGGCATGCCCAGTGA
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protein sequence of jgi.p|Trimin1|156673

>Trimin1|156673|e_gw1.1.306.1 ID=Trimin1|156673|e_gw1.1.306.1|Name=jgi.p|Trimin1|156673|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=175bp
MLRRLECPWTSETLVQEYAHGHHTVFEYALSLASRCPDWMVAETMEAAAS
YGQLHVIRWWLHELRANCSLTERACEKAARSGHVAALEALADGDALWRTT
TAAAAALGHLEVLHVAHQRGAPWAEGTARAAAKYGHLHLLQWAEEHGCPC
NLQQLEAVATRNDVLAWLRLRHAQ*
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mRNA from alignment at Contig_1:2216747..2217451-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1211 ID=mRNA_1211|Name=jgi.p|Trimin1|156673|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=705bp|location=Sequence derived from alignment at Contig_1:2216747..2217451- (Tribonema minus UTEX_B_3156 )
ATGCTGCGGAGGCTTGAGTGCCCATGGACCTCGGAGACCTTAGTACAAGA
GTATGCTCATGGGCACCACACGGTGTTCGAGTATGCACTCAGTCTGGCAA
GCAGGTGTCCGGTCTGCGAGGACTTGACCAGCGACGTGGCAGCGGAAGGC
GACATGCGGACGCCGGCCATGCTGCACGAGCAGCTGTAATCATTATGCTC
CATGCCATTGGGCATTCAAACGTGCGCCATAGCAGCGATGCGCGGCACGA
TGCCCGTGCTCAAACAGCTGCGCATCTGGCAGGTGCTGGAGGATTGGATG
GTCGCAGAGACCATGGAGGCAGCAGCATCCTACGGCCAGCTGCACGTCAT
CAGGTGGTGGCTGCATGAGCTGCGTGCTAACTGCAGCCTGACCGAGCGCG
CATGCGAGAAAGCAGCGCGCAGCGGCCATGTTGCGGCGCTCGAAGCCCTT
GCGGATGGAGATGCTCTGTGGAGGACGACCACAGCAGCGGCGGCCGCCTT
GGGCCACCTTGAGGTGCTGCACGTTGCACACCAGCGTGGCGCACCCTGGG
CGGAGGGGACAGCCAGAGCAGCGGCCAAGTACGGCCATCTGCACCTGCTG
CAGTGGGCGGAGGAGCACGGATGCCCATGCAACCTGCAGCAGCTTGAGGC
TGTTGCCACCCGCAATGACGTGCTGGCGTGGCTTCGCTTGCGGCATGCCC
AGTGA
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Coding sequence (CDS) from alignment at Contig_1:2216747..2217451-

>mRNA_1211 ID=mRNA_1211|Name=jgi.p|Trimin1|156673|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=525bp|location=Sequence derived from alignment at Contig_1:2216747..2217451- (Tribonema minus UTEX_B_3156 )
ATGCTGCGGAGGCTTGAGTGCCCATGGACCTCGGAGACCTTAGTACAAGA
GTATGCTCATGGGCACCACACGGTGTTCGAGTATGCACTCAGTCTGGCAA
GCAGGTGTCCGGATTGGATGGTCGCAGAGACCATGGAGGCAGCAGCATCC
TACGGCCAGCTGCACGTCATCAGGTGGTGGCTGCATGAGCTGCGTGCTAA
CTGCAGCCTGACCGAGCGCGCATGCGAGAAAGCAGCGCGCAGCGGCCATG
TTGCGGCGCTCGAAGCCCTTGCGGATGGAGATGCTCTGTGGAGGACGACC
ACAGCAGCGGCGGCCGCCTTGGGCCACCTTGAGGTGCTGCACGTTGCACA
CCAGCGTGGCGCACCCTGGGCGGAGGGGACAGCCAGAGCAGCGGCCAAGT
ACGGCCATCTGCACCTGCTGCAGTGGGCGGAGGAGCACGGATGCCCATGC
AACCTGCAGCAGCTTGAGGCTGTTGCCACCCGCAATGACGTGCTGGCGTG
GCTTCGCTTGCGGCATGCCCAGTGA
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