mRNA_12035 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151290
Unique NamemRNA_12035
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A835YH49_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH49_9STRA)

HSP 1 Score: 238 bits (607), Expect = 6.210e-80
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1
Query:    1 GRGRKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321
            GRGRKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV
Sbjct:    1 GRGRKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 107          
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A835ZL73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL73_9STRA)

HSP 1 Score: 173 bits (439), Expect = 7.270e-49
Identity = 72/104 (69.23%), Postives = 91/104 (87.50%), Query Frame = 1
Query:   10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321
            R++W+ +ED AIR+L  +LGM AW+++A  +E +Y I+GRTSKQ WERWHNHLSPGISKAPWT +EE++MAQAH ELGN+WSEIAKRLPGRTDNHVKNHW +++
Sbjct:   38 RRSWSTKEDAAIRSLVDKLGMQAWSQVAAAMETEYAIFGRTSKQIWERWHNHLSPGISKAPWTPQEERVMAQAHAELGNRWSEIAKRLPGRTDNHVKNHWYSSM 141          
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A7S1XJ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ32_9STRA)

HSP 1 Score: 150 bits (378), Expect = 5.910e-43
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:   10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 309
            R+ WT  ED AIR L  + G  +W+ +A+ +  D+ I GRT KQC ERWHNHL P I+K  WT EEEQIM +AH+ELGNKWSEIAKRLPGRTDNHVKNHW
Sbjct:   53 RRVWTKEEDHAIRELVAKHGTRSWSVIAERIVTDFNITGRTGKQCRERWHNHLDPTINKGAWTPEEEQIMVEAHKELGNKWSEIAKRLPGRTDNHVKNHW 152          
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: F0YL55_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL55_AURAN)

HSP 1 Score: 143 bits (361), Expect = 4.680e-42
Identity = 61/100 (61.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:   10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 309
            R+ W+ +ED AI++L  R G  +W+ +A+ +  DY I GRT KQC ERWHNHL P I+K  WT +EE++MA AH+ LGNKWSEIAK LPGRTDNHVKNHW
Sbjct:    6 RRVWSQQEDSAIKDLVMRYGTRSWSVIAEHIVSDYNIEGRTGKQCRERWHNHLDPHINKDAWTADEERVMADAHKSLGNKWSEIAKLLPGRTDNHVKNHW 105          
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: F0YL28_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL28_AURAN)

HSP 1 Score: 139 bits (350), Expect = 1.790e-39
Identity = 63/101 (62.38%), Postives = 76/101 (75.25%), Query Frame = 1
Query:   10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELG-NKWSEIAKRLPGRTDNHVKNHW 309
            R+ WT +ED AIR L  + G  +W+ +A+ + +D+ I GRT KQC ERWHNHL P I+K  WT EEE+IMA AH+ LG NKWSEIAK LPGRTDNHVKNHW
Sbjct:    7 RRVWTVQEDNAIRQLVMKYGTRSWSVIAEHIVQDFNIDGRTGKQCRERWHNHLDPHINKEAWTEEEERIMADAHKTLGCNKWSEIAKLLPGRTDNHVKNHW 107          
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A7S3IB34_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3IB34_9CILI)

HSP 1 Score: 134 bits (337), Expect = 4.960e-37
Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1
Query:   10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321
            RK+WTP ED AIR+L G  G   WT++A+ L+  YG+ GR+ KQC ERWHNHL P I+K  WT +EE  + Q  + LGN+WSEIAK LPGRTDN +KNH+ + +
Sbjct:    7 RKSWTPEEDSAIRDLVGEFGDKHWTQVAQALKDRYGLKGRSGKQCRERWHNHLDPSINKNCWTDQEEVTLFQYQKVLGNRWSEIAKYLPGRTDNSIKNHFYSTI 110          
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: G0QWF7_ICHMG (Myb protein, putative (Fragment) n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QWF7_ICHMG)

HSP 1 Score: 132 bits (331), Expect = 5.260e-37
Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:   10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 309
            R++W  +ED+ I+ L    G+  WT +A+ +E+ Y + GR+ KQC ERWHNHL PGI+K PWT +EE+I+ +AH++ GNKW+EIAK LPGRTDN +KNH+
Sbjct:    4 RRSWDNQEDKVIKELVALYGVKKWTVIAQKMEQIYSLKGRSGKQCRERWHNHLDPGINKLPWTNKEEKIIFEAHKQYGNKWAEIAKYLPGRTDNSIKNHF 103          
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A1R2BCP1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BCP1_9CILI)

HSP 1 Score: 133 bits (335), Expect = 8.280e-37
Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1
Query:   10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 309
            R+ WT +EDEAIR L    G   WT +A+ L+K + I GR+ KQC ERWHNHL+ GI K PWT EEEQ++   H+++GNKW+EI++ +PGRTDN VKNH+
Sbjct:   18 RRPWTAKEDEAIRGLVNENGTKQWTLIAEYLKKKFNIIGRSGKQCRERWHNHLNSGIVKRPWTLEEEQVLFNTHQKIGNKWAEISQSIPGRTDNTVKNHF 117          
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A7S3IB47_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3IB47_9CILI)

HSP 1 Score: 133 bits (334), Expect = 1.370e-36
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321
            R+ WTPREDEAI  L    G   WT +A+ L + + I GRT KQC ERWHNHL+PGI+K  WT EEE  + + H+ LGNKW+EIAK LPGRTDN +KNH+ + +
Sbjct:   34 RRPWTPREDEAISRLVMNAGTKQWTVIAEQLSQFFNIPGRTGKQCRERWHNHLNPGINKKAWTLEEELNLFEKHQSLGNKWAEIAKFLPGRTDNSIKNHFYSTL 137          
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A7S2SND5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SND5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 4.010e-36
Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 1
Query:   10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321
            R+ W+  EDEAIR L G  G   W+ +A  L + Y I GRT KQC ERWHNHL P I K PW+  EEQ +A+AH++LGN+WSEI+K LPGRTDN +KNHW + +
Sbjct:   43 RRVWSNEEDEAIRTLVGEQGTKKWSWIATELRQRYNIDGRTGKQCRERWHNHLDPEIKKCPWSESEEQALAEAHQKLGNRWSEISKLLPGRTDNAIKNHWYSTM 146          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YH49_9STRA6.210e-80100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835ZL73_9STRA7.270e-4969.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XJ32_9STRA5.910e-4365.00Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YL55_AURAN4.680e-4261.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
F0YL28_AURAN1.790e-3962.38Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3IB34_9CILI4.960e-3755.77Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
G0QWF7_ICHMG5.260e-3754.00Myb protein, putative (Fragment) n=1 Tax=Ichthyoph... [more]
A0A1R2BCP1_9CILI8.280e-3756.00Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A7S3IB47_9CILI1.370e-3656.73Hypothetical protein n=1 Tax=Fabrea salina TaxID=3... [more]
A0A7S2SND5_9STRA4.010e-3656.73Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_93contigContig_93:232475..234029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151290|gw1.93.47.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko05166,map04151,map05166
KEGG koko:K09420,ko:K09422
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue7.67e-43
Seed ortholog44056.XP_009041130.1
Hectar predicted targeting categoryother localisation
TranscriptId151612
TrackFilteredModels1
ProteinId151290
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151290gene_12035Tribonema minus UTEX_B_3156 geneContig_93 232475..234029 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151290Trimin1|151290|gw1.93.47.1Tribonema minus UTEX_B_3156 polypeptideContig_93 232475..234029 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12035_2exon_12035_2Tribonema minus UTEX_B_3156 exonContig_93 232475..232645 -
exon_12035_1exon_12035_1Tribonema minus UTEX_B_3156 exonContig_93 233880..234029 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12035CDS_12035Tribonema minus UTEX_B_3156 CDSContig_93 233880..234029 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12035 ID=mRNA_12035|Name=jgi.p|Trimin1|151290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_93:232475..234029- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GGCAGGGGGAGGAAGACGTGGACGCCCAGGGAGGACGAAGCTATTCGCAA
CCTAGCAGGCCGCCTAGGCATGAATGCGTGGACAGAGCTCGCCAAGTGCC
TTGAGAAGGACTACGGCATATATGGTCGCACGTCGAAGCAGTGCTGGGAG
CGCTGGCACAATCACCTGTCCCCCGGCATCAGCAAGGCCCCCTGGACGAC
CGAAGAAGAGCAAATTATGGCTCAGGCCCATGAAGAGCTCGGGAACAAGT
GGTCGGAGATCGCCAAGCGCCTGCCCGGGCGCACCGACAACCACGTCAAG
AACCACTGGTGCGCTGCAGTA
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protein sequence of jgi.p|Trimin1|151290

>Trimin1|151290|gw1.93.47.1 ID=Trimin1|151290|gw1.93.47.1|Name=jgi.p|Trimin1|151290|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
GRGRKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWE
RWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVK
NHWCAAV
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mRNA from alignment at Contig_93:232475..234029-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12035 ID=mRNA_12035|Name=jgi.p|Trimin1|151290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1555bp|location=Sequence derived from alignment at Contig_93:232475..234029- (Tribonema minus UTEX_B_3156 )
GGCAGGGGGAGGAAGACGTGGACGCCCAGGGAGGACGAAGCTATTCGCAA CCTAGCAGGCCGCCTAGGCATGAATGCGTGGACAGAGCTCGCCAAGTGCC TTGAGAAGGACTACGGCATATATGGTCGCACGTCGAAGCAGTGCTGGGAG GTGAGCCCGCGCGACTGCTTGCAACTGCTTGCTGTTGCGACGACGACGCC ACCGCGTTCATGACAAGGGTGGACCCTGCGATGCACGGACCCGAAGTGGC ACAAAGGGACGTCGGGCTTGCCAAGCAGCAACGCAGTACGCAGGATTGAA AGCAATGTCAGTGTCGTGTAAGCATGCTGACTGTAAGAGCGCGAGGCTCG CTTTGAGATTCCACAAAACTTCATGTGCGCCGTGAGAGAGCCTCCGCAGC CCCACGCAGCTGGCATGGTGAAACGCGGCGACCAGCGTGTTGGTGCTGCA GTCACTTGCATCATCTTTGACAACGCATTCTGGCAGTGCTACAGTATAGC ACCTGACGCTCTGCTTGAGCTGCCTGGGGCTTGACGGTGAAGCGTTCATT TTCCCGGCAGCGCCTGCATACCCAGCTCTACTTCATATTCGATCCTGTTG ACACCATGTCGCCATGGGCCGCTATGAGTGTTAAAAACAAGCACATCTTG GCTCGGGCAAGGATGGCTCCGCCAGTACGGCTTGTGCTTGATCTACTTCA ACTTGCAAGGCGCAGCTAGATCCCTGTCGCACCACTGCTCAGCAAGGCGC CTTACGGCTCAACCGCACAAAGTGCCTGGCCCTAGGTTGCACTTACCCTA GTTTTCCGGCATTTTAATGTCCTGTGCGCGATGCTTGTCCGTCAGATGAC AATTATTCTGGTCATGTCACACAGCGCTGGCACAGTCCACCTTGGTAGCG ATGTACTGTAGAAGAATGAATTCATGCTGAGTGCGCAATACAAGCCCAGT TGTATACTTTTGTTCATGTCCACTTCAGGGGCAGAAACACTATGAAATAC GCCAGATGTGCAGCTGTTGTGCTAGCCATCTACCTGGTGTTCTCTATGTT GCGCAGCGCACGCACACAGGCCCTACCACTGTTGCTTTTTCAACTCCTGT CCCATGCAGCGCTGGCACAGCCATGTGTCTGGCCACTGCACAGCAGCAGC CATACAACTCCCATCACTAGCGTTGTCATGACTATCATTGCATTCAGCAC TGGCGCCACCTCGTGTGTCCAGGCATGCGGCAGCGCAGGCTCACAAATCC CATCATCGGCATTGTCGCAATTGTTATTACGTGCAGCGCTCACAAACCCC ATCATCGGCATCGTCGTGATCATCGTCGCACGCAGCGCTCACAAACCCCA TCATTGGCACCGTCGTGATTGTTGTTGCGCGCAGCGCTGGCACAATCACC TGTCCCCCGGCATCAGCAAGGCCCCCTGGACGACCGAAGAAGAGCAAATT ATGGCTCAGGCCCATGAAGAGCTCGGGAACAAGTGGTCGGAGATCGCCAA GCGCCTGCCCGGGCGCACCGACAACCACGTCAAGAACCACTGGTGCGCTG CAGTA
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Coding sequence (CDS) from alignment at Contig_93:232475..234029-

>mRNA_12035 ID=mRNA_12035|Name=jgi.p|Trimin1|151290|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_93:232475..234029- (Tribonema minus UTEX_B_3156 )
GGCAGGGGGAGGAAGACGTGGACGCCCAGGGAGGACGAAGCTATTCGCAA
CCTAGCAGGCCGCCTAGGCATGAATGCGTGGACAGAGCTCGCCAAGTGCC
TTGAGAAGGACTACGGCATATATGGTCGCACGTCGAAGCAGTGCTGGGAG
CGCTGGCACAATCACCTGTCCCCCGGCATCAGCAAGGCCCCCTGGACGAC
CGAAGAAGAGCAAATTATGGCTCAGGCCCATGAAGAGCTCGGGAACAAGT
GGTCGGAGATCGCCAAGCGCCTGCCCGGGCGCACCGACAACCACGTCAAG
AACCACTGGTGCGCTGCAGTA
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