mRNA_12035 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A835YH49_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YH49_9STRA) HSP 1 Score: 238 bits (607), Expect = 6.210e-80 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 Query: 1 GRGRKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321 GRGRKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV Sbjct: 1 GRGRKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 107
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A835ZL73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL73_9STRA) HSP 1 Score: 173 bits (439), Expect = 7.270e-49 Identity = 72/104 (69.23%), Postives = 91/104 (87.50%), Query Frame = 1 Query: 10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321 R++W+ +ED AIR+L +LGM AW+++A +E +Y I+GRTSKQ WERWHNHLSPGISKAPWT +EE++MAQAH ELGN+WSEIAKRLPGRTDNHVKNHW +++ Sbjct: 38 RRSWSTKEDAAIRSLVDKLGMQAWSQVAAAMETEYAIFGRTSKQIWERWHNHLSPGISKAPWTPQEERVMAQAHAELGNRWSEIAKRLPGRTDNHVKNHWYSSM 141
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A7S1XJ32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJ32_9STRA) HSP 1 Score: 150 bits (378), Expect = 5.910e-43 Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 309 R+ WT ED AIR L + G +W+ +A+ + D+ I GRT KQC ERWHNHL P I+K WT EEEQIM +AH+ELGNKWSEIAKRLPGRTDNHVKNHW Sbjct: 53 RRVWTKEEDHAIRELVAKHGTRSWSVIAERIVTDFNITGRTGKQCRERWHNHLDPTINKGAWTPEEEQIMVEAHKELGNKWSEIAKRLPGRTDNHVKNHW 152
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: F0YL55_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL55_AURAN) HSP 1 Score: 143 bits (361), Expect = 4.680e-42 Identity = 61/100 (61.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 309 R+ W+ +ED AI++L R G +W+ +A+ + DY I GRT KQC ERWHNHL P I+K WT +EE++MA AH+ LGNKWSEIAK LPGRTDNHVKNHW Sbjct: 6 RRVWSQQEDSAIKDLVMRYGTRSWSVIAEHIVSDYNIEGRTGKQCRERWHNHLDPHINKDAWTADEERVMADAHKSLGNKWSEIAKLLPGRTDNHVKNHW 105
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: F0YL28_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL28_AURAN) HSP 1 Score: 139 bits (350), Expect = 1.790e-39 Identity = 63/101 (62.38%), Postives = 76/101 (75.25%), Query Frame = 1 Query: 10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELG-NKWSEIAKRLPGRTDNHVKNHW 309 R+ WT +ED AIR L + G +W+ +A+ + +D+ I GRT KQC ERWHNHL P I+K WT EEE+IMA AH+ LG NKWSEIAK LPGRTDNHVKNHW Sbjct: 7 RRVWTVQEDNAIRQLVMKYGTRSWSVIAEHIVQDFNIDGRTGKQCRERWHNHLDPHINKEAWTEEEERIMADAHKTLGCNKWSEIAKLLPGRTDNHVKNHW 107
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A7S3IB34_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3IB34_9CILI) HSP 1 Score: 134 bits (337), Expect = 4.960e-37 Identity = 58/104 (55.77%), Postives = 75/104 (72.12%), Query Frame = 1 Query: 10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321 RK+WTP ED AIR+L G G WT++A+ L+ YG+ GR+ KQC ERWHNHL P I+K WT +EE + Q + LGN+WSEIAK LPGRTDN +KNH+ + + Sbjct: 7 RKSWTPEEDSAIRDLVGEFGDKHWTQVAQALKDRYGLKGRSGKQCRERWHNHLDPSINKNCWTDQEEVTLFQYQKVLGNRWSEIAKYLPGRTDNSIKNHFYSTI 110
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: G0QWF7_ICHMG (Myb protein, putative (Fragment) n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0QWF7_ICHMG) HSP 1 Score: 132 bits (331), Expect = 5.260e-37 Identity = 54/100 (54.00%), Postives = 76/100 (76.00%), Query Frame = 1 Query: 10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 309 R++W +ED+ I+ L G+ WT +A+ +E+ Y + GR+ KQC ERWHNHL PGI+K PWT +EE+I+ +AH++ GNKW+EIAK LPGRTDN +KNH+ Sbjct: 4 RRSWDNQEDKVIKELVALYGVKKWTVIAQKMEQIYSLKGRSGKQCRERWHNHLDPGINKLPWTNKEEKIIFEAHKQYGNKWAEIAKYLPGRTDNSIKNHF 103
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A1R2BCP1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BCP1_9CILI) HSP 1 Score: 133 bits (335), Expect = 8.280e-37 Identity = 56/100 (56.00%), Postives = 74/100 (74.00%), Query Frame = 1 Query: 10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHW 309 R+ WT +EDEAIR L G WT +A+ L+K + I GR+ KQC ERWHNHL+ GI K PWT EEEQ++ H+++GNKW+EI++ +PGRTDN VKNH+ Sbjct: 18 RRPWTAKEDEAIRGLVNENGTKQWTLIAEYLKKKFNIIGRSGKQCRERWHNHLNSGIVKRPWTLEEEQVLFNTHQKIGNKWAEISQSIPGRTDNTVKNHF 117
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A7S3IB47_9CILI (Hypothetical protein n=1 Tax=Fabrea salina TaxID=342563 RepID=A0A7S3IB47_9CILI) HSP 1 Score: 133 bits (334), Expect = 1.370e-36 Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 1 Query: 10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321 R+ WTPREDEAI L G WT +A+ L + + I GRT KQC ERWHNHL+PGI+K WT EEE + + H+ LGNKW+EIAK LPGRTDN +KNH+ + + Sbjct: 34 RRPWTPREDEAISRLVMNAGTKQWTVIAEQLSQFFNIPGRTGKQCRERWHNHLNPGINKKAWTLEEELNLFEKHQSLGNKWAEIAKFLPGRTDNSIKNHFYSTL 137
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Match: A0A7S2SND5_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SND5_9STRA) HSP 1 Score: 137 bits (346), Expect = 4.010e-36 Identity = 59/104 (56.73%), Postives = 74/104 (71.15%), Query Frame = 1 Query: 10 RKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWERWHNHLSPGISKAPWTTEEEQIMAQAHEELGNKWSEIAKRLPGRTDNHVKNHWCAAV 321 R+ W+ EDEAIR L G G W+ +A L + Y I GRT KQC ERWHNHL P I K PW+ EEQ +A+AH++LGN+WSEI+K LPGRTDN +KNHW + + Sbjct: 43 RRVWSNEEDEAIRTLVGEQGTKKWSWIATELRQRYNIDGRTGKQCRERWHNHLDPEIKKCPWSESEEQALAEAHQKLGNRWSEISKLLPGRTDNAIKNHWYSTM 146 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151290 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12035 ID=mRNA_12035|Name=jgi.p|Trimin1|151290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=321bp|location=Sequence derived from alignment at Contig_93:232475..234029- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGCAGGGGGAGGAAGACGTGGACGCCCAGGGAGGACGAAGCTATTCGCAAback to top protein sequence of jgi.p|Trimin1|151290 >Trimin1|151290|gw1.93.47.1 ID=Trimin1|151290|gw1.93.47.1|Name=jgi.p|Trimin1|151290|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp GRGRKTWTPREDEAIRNLAGRLGMNAWTELAKCLEKDYGIYGRTSKQCWEback to top mRNA from alignment at Contig_93:232475..234029- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12035 ID=mRNA_12035|Name=jgi.p|Trimin1|151290|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1555bp|location=Sequence derived from alignment at Contig_93:232475..234029- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_93:232475..234029- >mRNA_12035 ID=mRNA_12035|Name=jgi.p|Trimin1|151290|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_93:232475..234029- (Tribonema minus UTEX_B_3156 )back to top |