mRNA_12000 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A836C844_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C844_9STRA) HSP 1 Score: 336 bits (862), Expect = 3.080e-117 Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1 Query: 1 MGTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 MGTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK Sbjct: 1 MGTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 156
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A835YLN0_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN0_9STRA) HSP 1 Score: 268 bits (684), Expect = 4.490e-88 Identity = 122/160 (76.25%), Postives = 136/160 (85.00%), Query Frame = 1 Query: 10 WAPDEDARLRDAVDRHGPRSWRAIAEDVGGA-------RTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 W +EDARLR VD+HG R+W+ +A+++ A RTD+QCL+RW K LRPGLHKG WTE EDRVVRESVE GIAKVKWS +AA+LPGRIGKQCRERWFNHLDPA+KRS WTPEEDTV+FEAQ RLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK Sbjct: 36 WTSEEDARLRAVVDKHGSRNWKLVADELAQAQPHAQPPRTDVQCLNRWKKTLRPGLHKGAWTEAEDRVVRESVEECGIAKVKWSTIAARLPGRIGKQCRERWFNHLDPALKRSTWTPEEDTVIFEAQARLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 195
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S2BQG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG7_9STRA) HSP 1 Score: 245 bits (626), Expect = 3.890e-81 Identity = 109/155 (70.32%), Postives = 127/155 (81.94%), Query Frame = 1 Query: 4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 G W +EDA LR V++HG ++WR +AE +G RTD+QCLHRWNKVLRPGLHKGPWTE ED +VR+ V G KVKWSA+AAKL GRIGKQCRERWFNHLDP I + WTPEED +VFEAQ + GNRW +IAKLLPGRTEN+VKNR+NSSA+KK Sbjct: 7 GKWTKEEDASLRVIVEQHGAKNWRKVAELLGDTRTDVQCLHRWNKVLRPGLHKGPWTEEEDGIVRDMVLMYGAGKVKWSAIAAKLHGRIGKQCRERWFNHLDPNINKGEWTPEEDRIVFEAQNQFGNRWSDIAKLLPGRTENSVKNRWNSSARKK 161
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: D7FRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA0_ECTSI) HSP 1 Score: 259 bits (661), Expect = 8.030e-79 Identity = 113/155 (72.90%), Postives = 130/155 (83.87%), Query Frame = 1 Query: 4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 G W +ED RLR+ V+ HG R+WR +AE +G R+D+QCLHRWNKVLRPGLHKGPWTE ED +VRE VE G KVKWS VA++LPGRIGKQCRERWFNHLDP+IK+ W+PEED +VF AQ +GNRWCEIAKLLPGRTENAVKNRFNSSA+KK Sbjct: 95 GKWTKEEDTRLREIVEHHGARNWRMVAEQLGTLRSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSARKK 249
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S2R561_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R561_9STRA) HSP 1 Score: 251 bits (642), Expect = 1.450e-77 Identity = 108/155 (69.68%), Postives = 133/155 (85.81%), Query Frame = 1 Query: 4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 G W+ +ED +LR V++HG ++W+ +AE +G R+D+QCLHRWNKVLRPGLHKGPWTE EDR+V + V A G+ +KWS +AA+LPGRIGKQCRERWFNHLDP+IK+ WTPEED V+FEAQL +GNRWCEIAKLLPGRTENAVKNR+NSSA+K+ Sbjct: 147 GKWSREEDDKLRAIVEQHGAKNWKKVAELLGPVRSDVQCLHRWNKVLRPGLHKGPWTEDEDRIVSDMVLAHGVGNIKWSVIAAELPGRIGKQCRERWFNHLDPSIKKGEWTPEEDKVLFEAQLVVGNRWCEIAKLLPGRTENAVKNRWNSSARKR 301
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S1GEG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEG8_9STRA) HSP 1 Score: 235 bits (599), Expect = 2.040e-76 Identity = 101/155 (65.16%), Postives = 126/155 (81.29%), Query Frame = 1 Query: 4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 G W EDA LR AV+ HG R+W+ IAE +G RTD+QCLHRWNKVL+PGL KGPW + ED VVR+ V G+ +V+WS +A+KLPGRIGKQCRERWFNHLDPAIK+ W EED ++F+AQ +GN+WCEIA++LPGRTENAVKNR+NSSA+++ Sbjct: 12 GNWTAAEDAELRVAVEAHGGRNWKRIAETLGHGRTDVQCLHRWNKVLKPGLVKGPWLKEEDDVVRDMVMKYGVGQVRWSVIASKLPGRIGKQCRERWFNHLDPAIKKGGWMEEEDLLIFQAQREVGNKWCEIARMLPGRTENAVKNRWNSSARRR 166
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A6U4HUA2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HUA2_9STRA) HSP 1 Score: 245 bits (626), Expect = 2.630e-75 Identity = 107/155 (69.03%), Postives = 127/155 (81.94%), Query Frame = 1 Query: 4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 G W+ +EDARL+ V HG ++W+ IAE +G R+D+QCLHRWNKVL+PGLHKGPW ED VVR+ V G+ KVKWS +AA LPGRIGKQCRERWFNHLDP+I ++PWT EEDT++FEAQ GNRWCEIAKLLPGRTEN VKNR+NSSA+KK Sbjct: 242 GKWSKEEDARLKGIVQEHGAKNWKKIAELLGHTRSDVQCLHRWNKVLKPGLHKGPWQAAEDEVVRDMVIRHGVGKVKWSDIAALLPGRIGKQCRERWFNHLDPSISKAPWTEEEDTIIFEAQQIFGNRWCEIAKLLPGRTENMVKNRWNSSARKK 396
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: F0Y9B4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9B4_AURAN) HSP 1 Score: 226 bits (577), Expect = 8.110e-74 Identity = 98/153 (64.05%), Postives = 121/153 (79.08%), Query Frame = 1 Query: 10 WAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 W +ED RLR+ V+ G ++W+ +A +G R+D+QCLHRWNKVLRPGL KGPWT ED++V++ V G +KWS +AA+LPGRIGKQCRERWFNHLDP IK+ WTPEED ++FE Q GNRW EIAKLLPGRTENAVKNR+NSSA+K+ Sbjct: 2 WTEEEDNRLREIVETFGAKNWKRLAMLLGNVRSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKR 154
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S3HPT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPT5_9STRA) HSP 1 Score: 228 bits (581), Expect = 1.280e-70 Identity = 96/155 (61.94%), Postives = 121/155 (78.06%), Query Frame = 1 Query: 4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 G W+ +ED L++ V HG +SW+ +A +G RTD+QCLHRWNKVLRPGL KG W++ ED++VR V VG+ KV+WS +A +LPGRIGKQCRERWFNHLDP IK+ WT +E+ +++EAQ GNRWCEI+KLLPGRTENAVKNR+NS KK Sbjct: 73 GKWSTEEDTLLKEIVQVHGAKSWKKVAGLLGKTRTDVQCLHRWNKVLRPGLQKGAWSKEEDQIVRNMVAQVGVVKVRWSTIAEQLPGRIGKQCRERWFNHLDPTIKKGDWTRDEEIIIYEAQRHFGNRWCEISKLLPGRTENAVKNRWNSCTMKK 227
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A8J2X3E5_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3E5_9STRA) HSP 1 Score: 230 bits (586), Expect = 4.220e-70 Identity = 102/155 (65.81%), Postives = 122/155 (78.71%), Query Frame = 1 Query: 4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468 G W +ED RLR+ V+ G ++W+ +A +G R+D+QCLHRWNKVLRPGL KGPWT EDRVVR+ V G +KWS +AA+LPGRIGKQCRERWFNHLDP IK+ WTP+ED V+FE Q GNRW EIAKLLPGRTENAVKNR+NSSA+K+ Sbjct: 96 GKWTEEEDRRLREIVETFGAKNWKRLAMLLGTVRSDVQCLHRWNKVLRPGLSKGPWTAAEDRVVRDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPDIKKGDWTPDEDAVLFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKR 250
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A836C9V5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V5_9STRA) HSP 1 Score: 224 bits (570), Expect = 3.430e-74 Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1 Query: 1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW Sbjct: 1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 110
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: D7G3I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I8_ECTSI) HSP 1 Score: 127 bits (319), Expect = 7.780e-32 Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330 GLVTQ +S +VM FA Q+VK LHYSFG+++ P D D E H TFPL+RVMD V+T + E P LG + E EER ARR GK+P+ + TD TYTMAF SG+V+FQ W Sbjct: 218 GLVTQTVSKIVMSFAKQMVKSLHYSFGERRPPSDPLDVENPHVTFPLYRVMDWFVVTAEDEKPPTLGGALTESAEERAARRGGKSPDIVWSTDVTYTMAFQSGIVNFQDW 327
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A6H5KTB8_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB8_9PHAE) HSP 1 Score: 127 bits (318), Expect = 1.070e-31 Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1 Query: 1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330 GLVTQ +S +VM FA Q+VK LHYSFG+++ P D D E H TFPL+RVMD V+T + E P LG + E EER ARR GK+P+ + TD TYTMAF SG+V+FQ W Sbjct: 80 GLVTQTVSKIVMSFAKQMVKSLHYSFGERRPPSDPLDIENPHVTFPLYRVMDWFVVTAEDEKPPTLGGALTESAEERAARRGGKSPDIVWSTDVTYTMAFQSGIVNFQDW 189
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S4DAD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAD8_HETAK) HSP 1 Score: 84.0 bits (206), Expect = 1.610e-18 Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 1 Query: 1 GLVTQALSSVVMRFASQLVKVLHYSFGDK-KVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDF 321 GLV A + ++F S + + LHYS GDK + + +AE H TFPL ++ DR+V TP+G P LG I+E DE +QAR++ PE + TYT AF S +VD+ Sbjct: 26 GLVAGATARAGLKFVSSIQRSLHYSLGDKGRGAAERPEAEYPHMTFPLVKICDRVVPTPEGAEAPALGQEIEESDEAKQARKSSTEPE-VYLPGRTYTFAFFSSIVDW 132
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A836CIV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV3_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.090e-16 Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1 Query: 1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330 GLVT L ++ FA +L + +HYSFG K ++E H +FPL +D +++TP GEA PPLG E ++ R +GK +F D TYT +FHS + W Sbjct: 4 GLVTMGLCRAMLSFAQRLNRNMHYSFGSKD------NSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 107
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A0M0JZC7_9EUKA (DUF547 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZC7_9EUKA) HSP 1 Score: 55.5 bits (132), Expect = 1.350e-6 Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 1 Query: 1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGV--MIDEPDEERQARRAGKTPEPA--FRTDATYTMAFHSGMVDFQKW 330 GL+T+ ++ V+ S ++ + H+SFG+ P S +AE H L DR+++TP GEA PPLG D D E A R + A F TYT +F++ +D W Sbjct: 42 GLLTKGVARGVLSLISAVLPI-HFSFGN---PSLSQNAERPHIVSNLMIAADRMIVTPAGEAPPPLGTDATFDLEDLEDNAARKRRRQLGAIPFEVGPTYTFSFNTSNLDLPTW 151 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
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BLAST of jgi.p|Trimin1|150943 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12000 ID=mRNA_12000|Name=jgi.p|Trimin1|150943|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_83:593871..594338- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGCACGTGGGCGCCGGACGAGGACGCGCGCCTGCGTGACGCCGTCGAback to top protein sequence of jgi.p|Trimin1|150943 >Trimin1|150943|gw1.83.83.1 ID=Trimin1|150943|gw1.83.83.1|Name=jgi.p|Trimin1|150943|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp MGTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPback to top mRNA from alignment at Contig_83:593871..594338- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12000 ID=mRNA_12000|Name=jgi.p|Trimin1|150943|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_83:593871..594338- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_83:593871..594338- >mRNA_12000 ID=mRNA_12000|Name=jgi.p|Trimin1|150943|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_83:593871..594338- (Tribonema minus UTEX_B_3156 )back to top |