mRNA_12000 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|150943
Unique NamemRNA_12000
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A836C844_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C844_9STRA)

HSP 1 Score: 336 bits (862), Expect = 3.080e-117
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 1
Query:    1 MGTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            MGTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK
Sbjct:    1 MGTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 156          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A835YLN0_9STRA (Homeodomain-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLN0_9STRA)

HSP 1 Score: 268 bits (684), Expect = 4.490e-88
Identity = 122/160 (76.25%), Postives = 136/160 (85.00%), Query Frame = 1
Query:   10 WAPDEDARLRDAVDRHGPRSWRAIAEDVGGA-------RTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            W  +EDARLR  VD+HG R+W+ +A+++  A       RTD+QCL+RW K LRPGLHKG WTE EDRVVRESVE  GIAKVKWS +AA+LPGRIGKQCRERWFNHLDPA+KRS WTPEEDTV+FEAQ RLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK
Sbjct:   36 WTSEEDARLRAVVDKHGSRNWKLVADELAQAQPHAQPPRTDVQCLNRWKKTLRPGLHKGAWTEAEDRVVRESVEECGIAKVKWSTIAARLPGRIGKQCRERWFNHLDPALKRSTWTPEEDTVIFEAQARLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 195          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S2BQG7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BQG7_9STRA)

HSP 1 Score: 245 bits (626), Expect = 3.890e-81
Identity = 109/155 (70.32%), Postives = 127/155 (81.94%), Query Frame = 1
Query:    4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            G W  +EDA LR  V++HG ++WR +AE +G  RTD+QCLHRWNKVLRPGLHKGPWTE ED +VR+ V   G  KVKWSA+AAKL GRIGKQCRERWFNHLDP I +  WTPEED +VFEAQ + GNRW +IAKLLPGRTEN+VKNR+NSSA+KK
Sbjct:    7 GKWTKEEDASLRVIVEQHGAKNWRKVAELLGDTRTDVQCLHRWNKVLRPGLHKGPWTEEEDGIVRDMVLMYGAGKVKWSAIAAKLHGRIGKQCRERWFNHLDPNINKGEWTPEEDRIVFEAQNQFGNRWSDIAKLLPGRTENSVKNRWNSSARKK 161          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: D7FRA0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRA0_ECTSI)

HSP 1 Score: 259 bits (661), Expect = 8.030e-79
Identity = 113/155 (72.90%), Postives = 130/155 (83.87%), Query Frame = 1
Query:    4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            G W  +ED RLR+ V+ HG R+WR +AE +G  R+D+QCLHRWNKVLRPGLHKGPWTE ED +VRE VE  G  KVKWS VA++LPGRIGKQCRERWFNHLDP+IK+  W+PEED +VF AQ  +GNRWCEIAKLLPGRTENAVKNRFNSSA+KK
Sbjct:   95 GKWTKEEDTRLREIVEHHGARNWRMVAEQLGTLRSDVQCLHRWNKVLRPGLHKGPWTEEEDSIVRECVEHSGAQKVKWSVVASRLPGRIGKQCRERWFNHLDPSIKKGEWSPEEDRIVFGAQAYMGNRWCEIAKLLPGRTENAVKNRFNSSARKK 249          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S2R561_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R561_9STRA)

HSP 1 Score: 251 bits (642), Expect = 1.450e-77
Identity = 108/155 (69.68%), Postives = 133/155 (85.81%), Query Frame = 1
Query:    4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            G W+ +ED +LR  V++HG ++W+ +AE +G  R+D+QCLHRWNKVLRPGLHKGPWTE EDR+V + V A G+  +KWS +AA+LPGRIGKQCRERWFNHLDP+IK+  WTPEED V+FEAQL +GNRWCEIAKLLPGRTENAVKNR+NSSA+K+
Sbjct:  147 GKWSREEDDKLRAIVEQHGAKNWKKVAELLGPVRSDVQCLHRWNKVLRPGLHKGPWTEDEDRIVSDMVLAHGVGNIKWSVIAAELPGRIGKQCRERWFNHLDPSIKKGEWTPEEDKVLFEAQLVVGNRWCEIAKLLPGRTENAVKNRWNSSARKR 301          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S1GEG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEG8_9STRA)

HSP 1 Score: 235 bits (599), Expect = 2.040e-76
Identity = 101/155 (65.16%), Postives = 126/155 (81.29%), Query Frame = 1
Query:    4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            G W   EDA LR AV+ HG R+W+ IAE +G  RTD+QCLHRWNKVL+PGL KGPW + ED VVR+ V   G+ +V+WS +A+KLPGRIGKQCRERWFNHLDPAIK+  W  EED ++F+AQ  +GN+WCEIA++LPGRTENAVKNR+NSSA+++
Sbjct:   12 GNWTAAEDAELRVAVEAHGGRNWKRIAETLGHGRTDVQCLHRWNKVLKPGLVKGPWLKEEDDVVRDMVMKYGVGQVRWSVIASKLPGRIGKQCRERWFNHLDPAIKKGGWMEEEDLLIFQAQREVGNKWCEIARMLPGRTENAVKNRWNSSARRR 166          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A6U4HUA2_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HUA2_9STRA)

HSP 1 Score: 245 bits (626), Expect = 2.630e-75
Identity = 107/155 (69.03%), Postives = 127/155 (81.94%), Query Frame = 1
Query:    4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            G W+ +EDARL+  V  HG ++W+ IAE +G  R+D+QCLHRWNKVL+PGLHKGPW   ED VVR+ V   G+ KVKWS +AA LPGRIGKQCRERWFNHLDP+I ++PWT EEDT++FEAQ   GNRWCEIAKLLPGRTEN VKNR+NSSA+KK
Sbjct:  242 GKWSKEEDARLKGIVQEHGAKNWKKIAELLGHTRSDVQCLHRWNKVLKPGLHKGPWQAAEDEVVRDMVIRHGVGKVKWSDIAALLPGRIGKQCRERWFNHLDPSISKAPWTEEEDTIIFEAQQIFGNRWCEIAKLLPGRTENMVKNRWNSSARKK 396          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: F0Y9B4_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9B4_AURAN)

HSP 1 Score: 226 bits (577), Expect = 8.110e-74
Identity = 98/153 (64.05%), Postives = 121/153 (79.08%), Query Frame = 1
Query:   10 WAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            W  +ED RLR+ V+  G ++W+ +A  +G  R+D+QCLHRWNKVLRPGL KGPWT  ED++V++ V   G   +KWS +AA+LPGRIGKQCRERWFNHLDP IK+  WTPEED ++FE Q   GNRW EIAKLLPGRTENAVKNR+NSSA+K+
Sbjct:    2 WTEEEDNRLREIVETFGAKNWKRLAMLLGNVRSDVQCLHRWNKVLRPGLSKGPWTADEDKIVKDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPEIKKGDWTPEEDNILFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKR 154          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S3HPT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HPT5_9STRA)

HSP 1 Score: 228 bits (581), Expect = 1.280e-70
Identity = 96/155 (61.94%), Postives = 121/155 (78.06%), Query Frame = 1
Query:    4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            G W+ +ED  L++ V  HG +SW+ +A  +G  RTD+QCLHRWNKVLRPGL KG W++ ED++VR  V  VG+ KV+WS +A +LPGRIGKQCRERWFNHLDP IK+  WT +E+ +++EAQ   GNRWCEI+KLLPGRTENAVKNR+NS   KK
Sbjct:   73 GKWSTEEDTLLKEIVQVHGAKSWKKVAGLLGKTRTDVQCLHRWNKVLRPGLQKGAWSKEEDQIVRNMVAQVGVVKVRWSTIAEQLPGRIGKQCRERWFNHLDPTIKKGDWTRDEEIIIYEAQRHFGNRWCEISKLLPGRTENAVKNRWNSCTMKK 227          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A8J2X3E5_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3E5_9STRA)

HSP 1 Score: 230 bits (586), Expect = 4.220e-70
Identity = 102/155 (65.81%), Postives = 122/155 (78.71%), Query Frame = 1
Query:    4 GTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRPGLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFNHLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFNSSAQKK 468
            G W  +ED RLR+ V+  G ++W+ +A  +G  R+D+QCLHRWNKVLRPGL KGPWT  EDRVVR+ V   G   +KWS +AA+LPGRIGKQCRERWFNHLDP IK+  WTP+ED V+FE Q   GNRW EIAKLLPGRTENAVKNR+NSSA+K+
Sbjct:   96 GKWTEEEDRRLREIVETFGAKNWKRLAMLLGTVRSDVQCLHRWNKVLRPGLSKGPWTAAEDRVVRDMVLRHGAGNIKWSVIAAQLPGRIGKQCRERWFNHLDPDIKKGDWTPDEDAVLFETQRVHGNRWSEIAKLLPGRTENAVKNRWNSSARKR 250          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A836C9V5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9V5_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.430e-74
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 1
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330
            GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW
Sbjct:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 110          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: D7G3I8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3I8_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 7.780e-32
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330
            GLVTQ +S +VM FA Q+VK LHYSFG+++ P D  D E  H TFPL+RVMD  V+T + E  P LG  + E  EER ARR GK+P+  + TD TYTMAF SG+V+FQ W
Sbjct:  218 GLVTQTVSKIVMSFAKQMVKSLHYSFGERRPPSDPLDVENPHVTFPLYRVMDWFVVTAEDEKPPTLGGALTESAEERAARRGGKSPDIVWSTDVTYTMAFQSGIVNFQDW 327          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A6H5KTB8_9PHAE (DUF547 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB8_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 1.070e-31
Identity = 62/110 (56.36%), Postives = 77/110 (70.00%), Query Frame = 1
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330
            GLVTQ +S +VM FA Q+VK LHYSFG+++ P D  D E  H TFPL+RVMD  V+T + E  P LG  + E  EER ARR GK+P+  + TD TYTMAF SG+V+FQ W
Sbjct:   80 GLVTQTVSKIVMSFAKQMVKSLHYSFGERRPPSDPLDIENPHVTFPLYRVMDWFVVTAEDEKPPTLGGALTESAEERAARRGGKSPDIVWSTDVTYTMAFQSGIVNFQDW 189          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A7S4DAD8_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAD8_HETAK)

HSP 1 Score: 84.0 bits (206), Expect = 1.610e-18
Identity = 46/108 (42.59%), Postives = 65/108 (60.19%), Query Frame = 1
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDK-KVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDF 321
            GLV  A +   ++F S + + LHYS GDK +   +  +AE  H TFPL ++ DR+V TP+G   P LG  I+E DE +QAR++   PE  +    TYT AF S +VD+
Sbjct:   26 GLVAGATARAGLKFVSSIQRSLHYSLGDKGRGAAERPEAEYPHMTFPLVKICDRVVPTPEGAEAPALGQEIEESDEAKQARKSSTEPE-VYLPGRTYTFAFFSSIVDW 132          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A836CIV3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIV3_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.090e-16
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGVMIDEPDEERQARRAGKTPEPAFRTDATYTMAFHSGMVDFQKW 330
            GLVT  L   ++ FA +L + +HYSFG K       ++E  H +FPL   +D +++TP GEA PPLG    E    ++ R +GK    +F  D TYT +FHS  +    W
Sbjct:    4 GLVTMGLCRAMLSFAQRLNRNMHYSFGSKD------NSELPHISFPLVTNVDTLLVTPQGEAPPPLGQRFVEDPVLKKERMSGKAGPASFSLDCTYTFSFHSMYLSLPAW 107          
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Match: A0A0M0JZC7_9EUKA (DUF547 domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZC7_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.350e-6
Identity = 39/114 (34.21%), Postives = 58/114 (50.88%), Query Frame = 1
Query:    1 GLVTQALSSVVMRFASQLVKVLHYSFGDKKVPEDSGDAEPMHATFPLFRVMDRIVITPDGEAVPPLGV--MIDEPDEERQARRAGKTPEPA--FRTDATYTMAFHSGMVDFQKW 330
            GL+T+ ++  V+   S ++ + H+SFG+   P  S +AE  H    L    DR+++TP GEA PPLG     D  D E  A R  +    A  F    TYT +F++  +D   W
Sbjct:   42 GLLTKGVARGVLSLISAVLPI-HFSFGN---PSLSQNAERPHIVSNLMIAADRMIVTPAGEAPPPLGTDATFDLEDLEDNAARKRRRQLGAIPFEVGPTYTFSFNTSNLDLPTW 151          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|150943 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C844_9STRA3.080e-117100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835YLN0_9STRA4.490e-8876.25Homeodomain-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S2BQG7_9STRA3.890e-8170.32Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
D7FRA0_ECTSI8.030e-7972.90Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2R561_9STRA1.450e-7769.68Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1GEG8_9STRA2.040e-7665.16Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A6U4HUA2_9STRA2.630e-7569.03Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
F0Y9B4_AURAN8.110e-7464.05Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3HPT5_9STRA1.280e-7061.94Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A8J2X3E5_9STRA4.220e-7065.81Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]

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BLAST of jgi.p|Trimin1|150943 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A836C9V5_9STRA3.430e-74100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7G3I8_ECTSI7.780e-3256.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTB8_9PHAE1.070e-3156.36DUF547 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S4DAD8_HETAK1.610e-1842.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A836CIV3_9STRA1.090e-1638.18Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A0M0JZC7_9EUKA1.350e-634.21DUF547 domain-containing protein n=1 Tax=Chrysochr... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_83contigContig_83:593871..594338 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|150943|gw1.83.83.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04218,ko05166,map04218,map05166
KEGG koko:K21769
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue1.32e-79
Seed ortholog2880.D7FRA0
Hectar predicted targeting categoryother localisation
TranscriptId151265
TrackFilteredModels1
ProteinId150943
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150943gene_12000Tribonema minus UTEX_B_3156 geneContig_83 593871..594338 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12000_1exon_12000_1Tribonema minus UTEX_B_3156 exonContig_83 593871..594338 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12000CDS_12000Tribonema minus UTEX_B_3156 CDSContig_83 593871..594338 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|150943Trimin1|150943|gw1.83.83.1Tribonema minus UTEX_B_3156 polypeptideContig_83 593871..594338 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12000 ID=mRNA_12000|Name=jgi.p|Trimin1|150943|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_83:593871..594338- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACGTGGGCGCCGGACGAGGACGCGCGCCTGCGTGACGCCGTCGA
CAGGCACGGCCCGCGCAGCTGGCGCGCCATCGCGGAGGACGTCGGCGGCG
CGCGCACGGACATGCAGTGCCTGCACCGCTGGAACAAGGTGCTGCGGCCG
GGGCTGCACAAGGGGCCGTGGACGGAGACGGAGGACCGCGTCGTGCGCGA
GAGCGTCGAGGCGGTGGGCATCGCCAAGGTCAAGTGGTCCGCCGTCGCCG
CCAAGCTCCCCGGGCGCATCGGCAAGCAGTGCCGCGAGCGCTGGTTCAAC
CACCTCGACCCCGCGATCAAGCGCTCGCCGTGGACGCCCGAGGAGGACAC
GGTCGTGTTCGAGGCGCAGCTGCGCCTCGGCAACCGCTGGTGCGAGATCG
CCAAGCTGCTGCCGGGGCGCACGGAGAACGCCGTCAAGAACCGCTTCAAC
TCGAGCGCGCAGAAGAAG
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protein sequence of jgi.p|Trimin1|150943

>Trimin1|150943|gw1.83.83.1 ID=Trimin1|150943|gw1.83.83.1|Name=jgi.p|Trimin1|150943|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=156bp
MGTWAPDEDARLRDAVDRHGPRSWRAIAEDVGGARTDMQCLHRWNKVLRP
GLHKGPWTETEDRVVRESVEAVGIAKVKWSAVAAKLPGRIGKQCRERWFN
HLDPAIKRSPWTPEEDTVVFEAQLRLGNRWCEIAKLLPGRTENAVKNRFN
SSAQKK
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mRNA from alignment at Contig_83:593871..594338-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12000 ID=mRNA_12000|Name=jgi.p|Trimin1|150943|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=468bp|location=Sequence derived from alignment at Contig_83:593871..594338- (Tribonema minus UTEX_B_3156 )
ATGGGCACGTGGGCGCCGGACGAGGACGCGCGCCTGCGTGACGCCGTCGA CAGGCACGGCCCGCGCAGCTGGCGCGCCATCGCGGAGGACGTCGGCGGCG CGCGCACGGACATGCAGTGCCTGCACCGCTGGAACAAGGTGCTGCGGCCG GGGCTGCACAAGGGGCCGTGGACGGAGACGGAGGACCGCGTCGTGCGCGA GAGCGTCGAGGCGGTGGGCATCGCCAAGGTCAAGTGGTCCGCCGTCGCCG CCAAGCTCCCCGGGCGCATCGGCAAGCAGTGCCGCGAGCGCTGGTTCAAC CACCTCGACCCCGCGATCAAGCGCTCGCCGTGGACGCCCGAGGAGGACAC GGTCGTGTTCGAGGCGCAGCTGCGCCTCGGCAACCGCTGGTGCGAGATCG CCAAGCTGCTGCCGGGGCGCACGGAGAACGCCGTCAAGAACCGCTTCAAC TCGAGCGCGCAGAAGAAG
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Coding sequence (CDS) from alignment at Contig_83:593871..594338-

>mRNA_12000 ID=mRNA_12000|Name=jgi.p|Trimin1|150943|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=468bp|location=Sequence derived from alignment at Contig_83:593871..594338- (Tribonema minus UTEX_B_3156 )
ATGGGCACGTGGGCGCCGGACGAGGACGCGCGCCTGCGTGACGCCGTCGA
CAGGCACGGCCCGCGCAGCTGGCGCGCCATCGCGGAGGACGTCGGCGGCG
CGCGCACGGACATGCAGTGCCTGCACCGCTGGAACAAGGTGCTGCGGCCG
GGGCTGCACAAGGGGCCGTGGACGGAGACGGAGGACCGCGTCGTGCGCGA
GAGCGTCGAGGCGGTGGGCATCGCCAAGGTCAAGTGGTCCGCCGTCGCCG
CCAAGCTCCCCGGGCGCATCGGCAAGCAGTGCCGCGAGCGCTGGTTCAAC
CACCTCGACCCCGCGATCAAGCGCTCGCCGTGGACGCCCGAGGAGGACAC
GGTCGTGTTCGAGGCGCAGCTGCGCCTCGGCAACCGCTGGTGCGAGATCG
CCAAGCTGCTGCCGGGGCGCACGGAGAACGCCGTCAAGAACCGCTTCAAC
TCGAGCGCGCAGAAGAAG
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