mRNA_11903 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|174182
Unique NamemRNA_11903
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: A0A836CMD7_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMD7_9STRA)

HSP 1 Score: 497 bits (1280), Expect = 1.460e-177
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1 
Query:    1 MAPADVPPTDTDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGINM 774
            MAPADVPPTDTDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGINM
Sbjct:    1 MAPADVPPTDTDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGINM 258
[Close]
BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: A0A836CND4_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND4_9STRA)

HSP 1 Score: 403 bits (1035), Expect = 2.110e-140
Identity = 206/247 (83.40%), Postives = 221/247 (89.47%), Query Frame = 1 
Query:   31 TDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 771
            TDI IAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSP VQ YAEE+A NEIAHV VLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSP YSPY++D WFL G+FIFEDVGVTAYNGAA LLTNK+++G AASILAVEAYHGG IRTLLYQQED  LTPY  TVG A+TAISALRA VGGGKD  L T+G++S+ P D+NALAYAR A EVLAIVYLGS++ PGGFFP GIN
Sbjct:    1 TDIMIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPDVQAYAEEVARNEIAHVGVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPPYSPYYNDAWFLLGSFIFEDVGVTAYNGAAPLLTNKAIVGTAASILAVEAYHGGEIRTLLYQQEDQQLTPYTVTVGDAVTAISALRAKVGGGKDQGLTTDGMLSLTPADDNALAYAREAEEVLAIVYLGSSDKPGGFFPCGIN 247
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BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: A0A835YUW9_9STRA (Ferritin-like domain-containing protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUW9_9STRA)

HSP 1 Score: 381 bits (978), Expect = 9.530e-131
Identity = 198/269 (73.61%), Postives = 219/269 (81.41%), Query Frame = 1 
Query:   22 PTDTDITIAKFALN------------------LECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGINM 774
            PTD DI IAKFALN                  LECLEAEFYSYAA+GYGL+D+LRGYGPEPIGGMKA LSP VQ YAEEIA NEIAHV VLRAALG+ APACPQIDIGPAFAA ANAA  T   P Y+PY +D  FL GAF+FEDVGVTAYNGAA LLTNK +L  AASILAVEAYHGGS+RTLLYQQED+VLTP+ FTVG+A+   SALRA+VGGGKD ALET+GV+SI+P DEN+LA+AR ATEVL IVYLGSA+ PGGFFP+GINM
Sbjct:   42 PTDIDIAIAKFALNAQADCHSVPNIGFRVPLQLECLEAEFYSYAAYGYGLTDDLRGYGPEPIGGMKATLSPEVQAYAEEIAKNEIAHVGVLRAALGNLAPACPQIDIGPAFAAVANAAAATVFDPPYTPYDNDTSFLLGAFLFEDVGVTAYNGAAPLLTNKGILSTAASILAVEAYHGGSLRTLLYQQEDVVLTPHTFTVGEAVALASALRASVGGGKDKALETDGVLSIMPVDENSLAFARTATEVLNIVYLGSASTPGGFFPNGINM 310
[Close]
BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: A0A836CQA2_9STRA (Ferritin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CQA2_9STRA)

HSP 1 Score: 348 bits (893), Expect = 9.670e-119
Identity = 180/250 (72.00%), Postives = 200/250 (80.00%), Query Frame = 1 
Query:   34 DITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAV--QTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETN--GVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 771
            D+ I KFALNLECLEA+FYSYAAFG+GLSDE RG+GPEPIGG KA L+P    Q YAEEIANNEIAHVA LR  LGD AP CP IDIGPAFAAAANAA GT L P +SPY SD  F+ GAF+FEDVGVTAYNG A L+ NK VLGAA  ILA+EAYHGGS+RTLLYQQ D+ L PYAFTV  A+ +ISALRAA+GGGKD AL T   G  S+ P D NALA+AR   EVLAIVYLGSA+ PGGFFPDG++
Sbjct:    1 DVAIVKFALNLECLEAQFYSYAAFGHGLSDEQRGHGPEPIGGRKANLTPVATAQAYAEEIANNEIAHVAALRTVLGDQAPPCPLIDIGPAFAAAANAAAGTELVPPFSPYRSDALFVVGAFLFEDVGVTAYNGMAPLIENKDVLGAATGILAIEAYHGGSVRTLLYQQGDVTLAPYAFTVADAVASISALRAALGGGKDAALTTGDGGAPSVFPADANALAFARTTQEVLAIVYLGSADAPGGFFPDGVS 250
[Close]
BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: A0A835ZGC8_9STRA (Ferritin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGC8_9STRA)

HSP 1 Score: 320 bits (820), Expect = 4.040e-107
Identity = 170/252 (67.46%), Postives = 188/252 (74.60%), Query Frame = 1 
Query:   19 PPTDTDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGINM 774
            P TDTDI    FALNLECLEAEFYSYAAFG  L+DE RG GP  IGG +A LS   QTYAEEIAN+EI HV +LR  LGDAA  CP +DIGPAFAAAANAAVG  L+PAY+PYF+D WF  GAFIFEDVGVTAYNGAA L+ NK  L AAA +L VEAYH G +RTLLYQ +D  LTPY  TV  A TA+S LR  VGG KDV +   G   ++P DEN+L +AR   EVLAIVYLG A  PGGFFPDGINM
Sbjct:   34 PITDTDIL--NFALNLECLEAEFYSYAAFGAPLTDEQRGGGPASIGGKQAVLSDDFQTYAEEIANHEIGHVELLRGVLGDAAVPCPLMDIGPAFAAAANAAVGMKLAPAYTPYFNDPWFALGAFIFEDVGVTAYNGAAPLIKNKDYLAAAAGLLGVEAYHAGIVRTLLYQVKDTPLTPYPVTVAAATTAVSNLRGMVGGDKDVPIYDGGETHLVPVDENSLVFARTVDEVLAIVYLGDAKKPGGFFPDGINM 283
[Close]
BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: I0YQP4_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YQP4_COCSC)

HSP 1 Score: 258 bits (659), Expect = 1.140e-82
Identity = 150/262 (57.25%), Postives = 178/262 (67.94%), Query Frame = 1 
Query:   31 TDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGT-TLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGV--------------VSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 771
            TDI I  FALNLECLEAEFYSYAAFG GL+  L G GP   GG KA LS AVQ YA EIA +E+ HVA LR+ALGD A  CPQIDIG AF+A  +AA+G+   S  +SPY +DL FL G+F+FEDVGVTAY GAA  +T+K+VLGAA  ILAVEAYH G IRTLLYQ     + PY       + A+S LRAAVGGGKD  + +                  +++PT+  +LA+AR   EVLAIVY GSA+ PG FFP+GIN
Sbjct:   23 TDIQILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGSTGGQKAKLSYAVQQYALEIAEDELNHVAFLRSALGDKAVPCPQIDIGTAFSAIIDAALGSKATSYKFSPYDNDLDFLLGSFLFEDVGVTAYLGAAPAITDKTVLGAAGGILAVEAYHAGIIRTLLYQDGAYPVVPYKIQTVDFVQALSNLRAAVGGGKDQGITSPAADGSLYVPYLTSKYESNLVPTNAASLAFARTIPEVLAIVYGGSASTPGAFFPEGIN 284
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BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: A0A7L9QEA2_9CHLO (Putative extracellular protein CSOL_059a n=1 Tax=Pseudococcomyxa simplex TaxID=464287 RepID=A0A7L9QEA2_9CHLO)

HSP 1 Score: 256 bits (653), Expect = 9.200e-82
Identity = 151/263 (57.41%), Postives = 182/263 (69.20%), Query Frame = 1 
Query:   31 TDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGT-TLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKS-VLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALE---TNGVV-----------SIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 771
            TD+ I  FALNLECLEAEFYSYAAFG GL+  L G GP   GG KA LS +VQ YA EIA +EI HVA LR+ALG AA  CPQIDIG AF+A  NAA+GT   S  +SPY +DL FL GAF+FEDVGVTAY+GAA  +++K+ VL AAA IL+VEAYH G IRTLL+Q     + PY       + A+S LRAAVGGGKD  +     NG +           +++PT++++LA+AR   EVLAIVY GSA+ PG FFP GIN
Sbjct:   22 TDVNILNFALNLECLEAEFYSYAAFGKGLNATLLGGGPGATGGEKAQLSYSVQQYATEIAQDEINHVAFLRSALGAAAIPCPQIDIGAAFSAVINAALGTKATSYKFSPYDNDLDFLLGAFLFEDVGVTAYSGAAPFISDKTTVLAAAAGILSVEAYHAGIIRTLLFQDGAYPVKPYKIQTVDFVQALSNLRAAVGGGKDKGITDPPANGSLYIPYLTSKYSSNLVPTNDDSLAFARTIPEVLAIVYGGSASTPGAFFPQGIN 284
[Close]
BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: A0A8J9RR61_9CHLO (Desiccation-related protein PCC13-62 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RR61_9CHLO)

HSP 1 Score: 254 bits (650), Expect = 1.110e-80
Identity = 146/257 (56.81%), Postives = 173/257 (67.32%), Query Frame = 1 
Query:   31 TDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAFAAAANAAVGTT-LSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALET---NGVVS------IIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 771
            TD  I  FALNLECLEA+FYSYAA+G GL+  LRG GP   GG KA LS  VQ YA EIA +E+ HVA LR ALG AA  CPQID+GPAFAA   AA+G+  +   +SPY +DL FL  AFI EDVGVTAYNGAA L+  K  +GAAASILA EAYHGG IRTLLYQ+    + PY+         +S LR  VGGGKD  + +   NGV +      ++PTD N+L +AR  TEVL IVY GSA  P  F+P+G+N
Sbjct:   67 TDADILNFALNLECLEADFYSYAAYGSGLNSTLRGGGPMATGGKKAVLSSPVQNYANEIALDEVNHVAFLRMALGTAAVPCPQIDVGPAFAAIVKAALGSANMDTMFSPYDNDLDFLLAAFILEDVGVTAYNGAAPLIQAKKNVGAAASILATEAYHGGIIRTLLYQRGYDTVMPYSLQTVDFAQKLSNLRGTVGGGKDEGITSPMANGVKNTPYSSNLVPTDSNSLVFARTPTEVLNIVYGGSAAKPSAFYPNGVN 323
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BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: UPI00166CE419 (ferritin-like domain-containing protein n=1 Tax=Deinococcus roseus TaxID=392414 RepID=UPI00166CE419)

HSP 1 Score: 250 bits (638), Expect = 1.830e-79
Identity = 145/249 (58.23%), Postives = 171/249 (68.67%), Query Frame = 1 
Query:   34 DITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAA---LGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 771
            DI +  FALNLE LEAEFY +AAFG GLS+   G GP   GG KA LS A+Q  AEEIA +E AHV  LRA    LG    A PQ+DIGPAFAAAA+AA G  +   +SPY +DL+F  GAFIFEDVGVTAY+GAATL+T+  VL AAA ILAVEAYH G IR+ LY Q+D V+ P   TV   + AISALR +VGGGKD  +   G  +I+  D NA+AY R   EVL IVYL +    GGFFP+G+N
Sbjct:   39 DIDVLNFALNLEYLEAEFYLWAAFGAGLSNADAGGGPAATGGKKATLSAALQQRAEEIARDEEAHVKALRATITKLGGTPVARPQLDIGPAFAAAADAASGGKIK-GFSPYTNDLFFAHGAFIFEDVGVTAYSGAATLITSPDVLQAAAGILAVEAYHAGEIRSYLYDQKDTVVVP-GLTVEDVVAAISALRGSVGGGKDEGITKGGKANIVAADANAIAYHRTTREVLNIVYLAAGATKGGFFPNGLN 285
[Close]
BLAST of jgi.p|Trimin1|174182 vs. uniprot
Match: A0A511MYZ7_9DEIO (Uncharacterized protein n=1 Tax=Deinococcus cellulosilyticus NBRC 106333 = KACC 11606 TaxID=1223518 RepID=A0A511MYZ7_9DEIO)

HSP 1 Score: 241 bits (614), Expect = 7.550e-76
Identity = 145/251 (57.77%), Postives = 168/251 (66.93%), Query Frame = 1 
Query:   34 DITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEPIGGMKAALSPAVQTYAEEIANNEIAHVAVLRAA---LGDAAPACPQIDIGPAFAAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNKSVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYA--FTVGQAITAISALRAAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGGFFPDGIN 771
            D+ +  FALNLE LEAEFY +AAFG GLS    G GP   GG KA LS  +Q  AEEIA +E AHV  LRA    LG      PQIDIGPAFAAAA+AA G  +   +SPY +DL+F+ GAF+FEDVGVTAYNGAATLLT+  VL AAA ILAVEAYH G+IR  LY+      TP A   TV   + AISALR  VGGGKD  +   G  +I+  D NA+AYAR   EVL IVYLG  +  GGFFP+G+N
Sbjct:   39 DLDVLNFALNLEYLEAEFYLWAAFGTGLSAADAGGGPVATGGKKATLSAGIQQIAEEIARDEEAHVRALRATITKLGGTPVPRPQIDIGPAFAAAADAASGGKIK-GFSPYANDLFFMHGAFVFEDVGVTAYNGAATLLTDSGVLQAAAGILAVEAYHAGAIRHYLYENRT---TPVAAGLTVEDVVAAISALRGKVGGGKDEGITKGGKANIVAADANAIAYARTTREVLNIVYLGG-SAKGGFFPNGLN 284
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|174182 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMD7_9STRA1.460e-177100.00Ferritin-like domain-containing protein n=1 Tax=Tr... [more]
A0A836CND4_9STRA2.110e-14083.40Ferritin-like domain-containing protein (Fragment)... [more]
A0A835YUW9_9STRA9.530e-13173.61Ferritin-like domain-containing protein n=3 Tax=Tr... [more]
A0A836CQA2_9STRA9.670e-11972.00Ferritin-like domain-containing protein (Fragment)... [more]
A0A835ZGC8_9STRA4.040e-10767.46Ferritin-like domain-containing protein n=1 Tax=Tr... [more]
I0YQP4_COCSC1.140e-8257.25Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A7L9QEA2_9CHLO9.200e-8257.41Putative extracellular protein CSOL_059a n=1 Tax=P... [more]
A0A8J9RR61_9CHLO1.110e-8056.81Desiccation-related protein PCC13-62 n=1 Tax=Cocco... [more]
UPI00166CE4191.830e-7958.23ferritin-like domain-containing protein n=1 Tax=De... [more]
A0A511MYZ7_9DEIO7.550e-7657.77Uncharacterized protein n=1 Tax=Deinococcus cellul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_111contigContig_111:380494..382741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|174182|e_gw1.111.36.1
DescriptionDesiccation-related protein PCC13-62-like
COG categoryS
Max annot lvl33090|Viridiplantae
EggNOG OGs2CMPR@1|root,2QR8B@2759|Eukaryota,37II1@33090|Viridiplantae
Evalue1.86e-83
Seed ortholog248742.XP_005645257.1
Hectar predicted targeting categoryother localisation
TranscriptId174504
TrackFilteredModels1
ProteinId174182
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174182gene_11903Tribonema minus UTEX_B_3156 geneContig_111 380494..382741 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11903_1exon_11903_1Tribonema minus UTEX_B_3156 exonContig_111 380494..380556 +
exon_11903_2exon_11903_2Tribonema minus UTEX_B_3156 exonContig_111 380857..381199 +
exon_11903_3exon_11903_3Tribonema minus UTEX_B_3156 exonContig_111 381479..381588 +
exon_11903_4exon_11903_4Tribonema minus UTEX_B_3156 exonContig_111 382481..382741 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11903CDS_11903Tribonema minus UTEX_B_3156 CDSContig_111 380494..380556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|174182Trimin1|174182|e_gw1.111.36.1Tribonema minus UTEX_B_3156 polypeptideContig_111 380494..382741 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11903 ID=mRNA_11903|Name=jgi.p|Trimin1|174182|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_111:380494..382741+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCAGCTGACGTTCCACCCACAGACACCGACATCACGATAGCCAA
ATTCGCCCTAAACCTGGAGTGCCTCGAAGCCGAGTTCTACAGCTACGCTG
CGTTCGGCTACGGTCTGTCGGATGAGCTTCGTGGTTACGGCCCCGAGCCC
ATCGGGGGCATGAAGGCTGCGCTGTCCCCGGCAGTGCAAACGTATGCGGA
GGAGATTGCCAACAACGAAATAGCGCACGTGGCTGTCCTACGTGCCGCCC
TTGGCGACGCAGCCCCCGCTTGCCCCCAGATCGACATCGGCCCTGCCTTC
GCTGCTGCTGCCAATGCCGCTGTGGGCACCACTCTCAGCCCTGCCTACAG
CCCCTATTTTTCCGACCTTTGGTTCTTGACCGGCGCGTTTATCTTCGAGG
ATGTCGGTGTGACGGCGTACAACGGCGCTGCGACTCTGCTCACCAACAAG
AGTGTGCTCGGCGCCGCGGCCAGCATCCTGGCAGTCGAGGCGTACCACGG
CGGTAGCATCCGCACGCTCCTGTACCAGCAGGAGGACATCGTCCTCACCC
CCTACGCCTTCACCGTCGGCCAGGCCATCACCGCCATCTCCGCGCTGCGC
GCCGCGGTCGGCGGCGGCAAGGACGTGGCCCTCGAGACCAACGGCGTCGT
GTCCATCATCCCCACCGACGAGAACGCGCTCGCGTACGCGCGCATGGCGA
CCGAGGTGCTGGCGATCGTGTACCTGGGCAGCGCCAACGTCCCCGGCGGC
TTCTTCCCCGACGGCATCAACATGTAG
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protein sequence of jgi.p|Trimin1|174182

>Trimin1|174182|e_gw1.111.36.1 ID=Trimin1|174182|e_gw1.111.36.1|Name=jgi.p|Trimin1|174182|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MAPADVPPTDTDITIAKFALNLECLEAEFYSYAAFGYGLSDELRGYGPEP
IGGMKAALSPAVQTYAEEIANNEIAHVAVLRAALGDAAPACPQIDIGPAF
AAAANAAVGTTLSPAYSPYFSDLWFLTGAFIFEDVGVTAYNGAATLLTNK
SVLGAAASILAVEAYHGGSIRTLLYQQEDIVLTPYAFTVGQAITAISALR
AAVGGGKDVALETNGVVSIIPTDENALAYARMATEVLAIVYLGSANVPGG
FFPDGINM*
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mRNA from alignment at Contig_111:380494..382741+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11903 ID=mRNA_11903|Name=jgi.p|Trimin1|174182|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2248bp|location=Sequence derived from alignment at Contig_111:380494..382741+ (Tribonema minus UTEX_B_3156 )
ATGGCGCCAGCTGACGTTCCACCCACAGACACCGACATCACGATAGCCAA
ATTCGCCCTAAACGTAAGTCAGTGAGACTACGACGACCCGTAGGTTTAGC
AGAGGTGGGGCACTCTTGCAGAGATAAATCTGTGCATGTCCCACCTGTGC
ATGTGACCACCTCAAGTCCGGTTTGACGGCTGCACTCAGCGAGCCTTACT
GTGGATACGCGGCTTCGTCTGTTGCCACATGTACGTGCTCATGGAAACGA
ATCAAAAGATCGTAGAGCTCTCTAGGTGCTCAGGTGCTCATAGTCAGTTG
TAGATCTGCACAGTGTGCTGTCAATCTCATGATCCTGCATCCCTTGGCTC
GGACCTCTTGCAGCTGGAGTGCCTCGAAGCCGAGTTCTACAGCTACGCTG
CGTTCGGCTACGGTCTGTCGGATGAGCTTCGTGGTTACGGCCCCGAGCCC
ATCGGGGGCATGAAGGCTGCGCTGTCCCCGGCAGTGCAAACGTATGCGGA
GGAGATTGCCAACAACGAAATAGCGCACGTGGCTGTCCTACGTGCCGCCC
TTGGCGACGCAGCCCCCGCTTGCCCCCAGATCGACATCGGCCCTGCCTTC
GCTGCTGCTGCCAATGCCGCTGTGGGCACCACTCTCAGCCCTGCCTACAG
CCCCTATTTTTCCGACCTTTGGTTCTTGACCGGCGCGTTTATCTTCGAGG
ATGTCGGTGAGTCCCATGCATTGTATGCATTGGCTGCAGAAGTTCCATCT
GCTTGCCAGCGGTTGCTGCTGCTTGGGCCAGCTCAAAACTTGCACTCGTC
CATGCCCAGCGCATCCATTCATAGCCGGCATTGGTGTGACACAGGCCCGT
CATTGAATGCACTGCGCGTGTGTTCACCGACTTCAGCAAGACTCCCATGG
TGTACCCGCATGTTGCGGTGCTCACTGGACATTGCATTGCTCATACGTTG
ACCACCCACTGCCCCATTCTGCATTCTTCCTGCAGGTGTGACGGCGTACA
ACGGCGCTGCGACTCTGCTCACCAACAAGAGTGTGCTCGGCGCCGCGGCC
AGCATCCTGGCAGTCGAGGCGTACCACGGCGGTAGCATCCGCACGGTGAG
CCTTCGCATTGCAGTACGCTTGCGCTTCTGTTAAGGTGCTTCACGGTGCC
GAGCAGCTCGAGAGCGAAAAACTGTGATCACACATTGCGAGCAACGGAGG
CGAGAGCAAAGACCCAATCACACTTTTTGAGCAACGCAGGCCATCGCTGC
TGCACTCACTGGTGACAGATGCCATGGCACATGCAGCAGCCTGAGGAGAG
TGGTCTGCAACAGCAGCAAGCAGAAGCTAGCCAACAATGTTGCCGTGCTG
CTGCTTGCCGAAGTGTTTGCATGGCAGCCTTCCCTCTACGTCGGATGCCA
CAGCATGTAGAGGGAGTATCCAATGATTCCAATCACATGTCATGTCGTAG
CGGTCTATTTAATCATCCTAGCCGATTTAACTGAGGCTGTCGTACATGCT
CTGTTGTCGTTGCCAGCATTTTGTTTGCACACACATGCGGCACGTATGCT
GAAGGCAGCAGATCACATCAGTTACCGGGTTACCGGTACCGTATTGTATC
GATATCGCACTGTCGGGCCCTTGTTTAAGAAATAGGCAGACACATGGTAC
TGCCTCTCATGGTTACATAATGTACCTGTCTCACCGTTGGTGGCCTGAAG
CATGAGCAAATCAGCACAAGGTTTTCTCTATTGCACCATTACCTGAACGC
TTTCTTCATGAGCAAAGCAGCACCTATCCTGGCTCTCTGCAGCCAGAGAT
GGCAATACAGGCCGGTACAAGGCAAGCGGAGTGCCAATAGTGCCACTGCA
ATCGGTCCTCTACGTGTAACCAGAGCGCAGCCAGTTGAGCGCTCTGCCAA
GTGGGGCCTTCTCACGCACAAGCACCACCGCATCAGCTTATCCTGCAGCC
CCCCCCCCCCCCCCCCCTCTTCTTCGCCCTCTCGCAGCTCCTGTACCAGC
AGGAGGACATCGTCCTCACCCCCTACGCCTTCACCGTCGGCCAGGCCATC
ACCGCCATCTCCGCGCTGCGCGCCGCGGTCGGCGGCGGCAAGGACGTGGC
CCTCGAGACCAACGGCGTCGTGTCCATCATCCCCACCGACGAGAACGCGC
TCGCGTACGCGCGCATGGCGACCGAGGTGCTGGCGATCGTGTACCTGGGC
AGCGCCAACGTCCCCGGCGGCTTCTTCCCCGACGGCATCAACATGTAG
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Coding sequence (CDS) from alignment at Contig_111:380494..382741+

>mRNA_11903 ID=mRNA_11903|Name=jgi.p|Trimin1|174182|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_111:380494..382741+ (Tribonema minus UTEX_B_3156 )
ATGGCGCCAGCTGACGTTCCACCCACAGACACCGACATCACGATAGCCAA
ATTCGCCCTAAACCTGGAGTGCCTCGAAGCCGAGTTCTACAGCTACGCTG
CGTTCGGCTACGGTCTGTCGGATGAGCTTCGTGGTTACGGCCCCGAGCCC
ATCGGGGGCATGAAGGCTGCGCTGTCCCCGGCAGTGCAAACGTATGCGGA
GGAGATTGCCAACAACGAAATAGCGCACGTGGCTGTCCTACGTGCCGCCC
TTGGCGACGCAGCCCCCGCTTGCCCCCAGATCGACATCGGCCCTGCCTTC
GCTGCTGCTGCCAATGCCGCTGTGGGCACCACTCTCAGCCCTGCCTACAG
CCCCTATTTTTCCGACCTTTGGTTCTTGACCGGCGCGTTTATCTTCGAGG
ATGTCGGTGTGACGGCGTACAACGGCGCTGCGACTCTGCTCACCAACAAG
AGTGTGCTCGGCGCCGCGGCCAGCATCCTGGCAGTCGAGGCGTACCACGG
CGGTAGCATCCGCACGCTCCTGTACCAGCAGGAGGACATCGTCCTCACCC
CCTACGCCTTCACCGTCGGCCAGGCCATCACCGCCATCTCCGCGCTGCGC
GCCGCGGTCGGCGGCGGCAAGGACGTGGCCCTCGAGACCAACGGCGTCGT
GTCCATCATCCCCACCGACGAGAACGCGCTCGCGTACGCGCGCATGGCGA
CCGAGGTGCTGGCGATCGTGTACCTGGGCAGCGCCAACGTCCCCGGCGGC
TTCTTCCCCGACGGCATCAACATGTAG
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