mRNA_11811 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: A0A835ZJW2_9STRA (Yeats family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJW2_9STRA) HSP 1 Score: 442 bits (1138), Expect = 3.380e-155 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1
Query: 1 MSGGGPAGGERMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKEGFFACLMEGQTAAVREHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLDAQIKDTPASSG 639
MSGGGPAGGERMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKEGFFACLMEGQTAAVREHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLDAQIKDTPASSG
Sbjct: 1 MSGGGPAGGERMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKEGFFACLMEGQTAAVREHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLDAQIKDTPASSG 213
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: D7FWH7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH7_ECTSI) HSP 1 Score: 209 bits (533), Expect = 6.610e-64 Identity = 113/209 (54.07%), Postives = 142/209 (67.94%), Query Frame = 1
Query: 31 RMSGVTVCCPVVFGCVAFLLG-KDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKEGFFACLMEGQTAAV-REHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLD---AQIK-DTPASSG 639
R G++V CP+ +G +AFLL K E TH WTL+VRG +GEDISYFVSKVVFTLH SF TRE+T P+EVTE GWGEFEAK+T+HFKDP E+P+DV H ++LY D P VV E YDE+VFTDP E F+ LM+GQ R+H +++ FS + +Q+LAAARE+VH +L KDRI + D AQ+K ASSG
Sbjct: 15 RKKGLSVACPIAYGSLAFLLERKKQSEFVTHKWTLFVRGPNGEDISYFVSKVVFTLHPSFAEATREITSPPFEVTEMGWGEFEAKMTMHFKDPNEKPVDVLHQLRLYHDPATGTTQPKKAVVAEFYDEVVFTDPYEEFYNTLMQGQKLLPQRKHEHQEHFSTFSDGDTLQRLAAAREWVHNQLRETKDRIRKADMDMAQLKASATASSG 223
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: A0A7S3ZZU1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZU1_9STRA) HSP 1 Score: 210 bits (535), Expect = 7.160e-64 Identity = 103/196 (52.55%), Postives = 129/196 (65.82%), Query Frame = 1
Query: 28 ERMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKEGFFACLMEGQTAAVREHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLDAQI 615
+R+ VCCP+V+G +AF LG+ DE HTH WTL+VRG HGED+ YFV KVVF LH SF P RE+T+ P+EV+EKGWGEFE I +HFKDP E+P++V H VKLY G PVV+E YDE+VFTDP+E F+ LM HP ++ F +V+ L A EYV G+L+ VKD I RLD QI
Sbjct: 35 KRVKDAAVCCPLVYGSLAFWLGRKADEFHTHKWTLFVRGPHGEDLGYFVEKVVFKLHPSFAQPVREVTKPPFEVSEKGWGEFECHIRIHFKDPTEKPVEVSHIVKLYD--GTTPQAANQPVVSEVYDEVVFTDPREPFYQQLMAASKEPTEPHPLNGHFSKFEDAAEVETLVKAGEYVAGQLQTVKDSIARLDHQI 228
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: A0A7R9Y9J6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y9J6_9STRA) HSP 1 Score: 189 bits (480), Expect = 4.860e-56 Identity = 93/197 (47.21%), Postives = 130/197 (65.99%), Query Frame = 1
Query: 28 ERMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKEGFFACLMEGQTAAVREHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLDAQIK 618
ER VCCP+V+G +AF +GK DE TH WTLYVRG + ED+ YF+ KVVF LH SF P REL P+EVTEKGWGEFEAKI L+F+D +ER ++V H + LY PVV+E+YDE+VFT+P E F+ +++ Q HP +++ ++ DV+KL AARE + E E++K +I+R+D +++
Sbjct: 11 ERRKNTLVCCPIVYGSIAFWMGKKADEHSTHQWTLYVRGPNDEDLGYFIDKVVFVLHHSFANPERELRAPPFEVTEKGWGEFEAKIRLYFRDASERMVEVAHTIALYPPNNSQL-SVKKPVVSEKYDEVVFTEPAEDFYEHVLQRQYDTRPAHPLQEHFLAYTDMHDVEKLTAAREILKQESESLKAQIVRMDGELE 206
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: A0A7S2RH18_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RH18_9STRA) HSP 1 Score: 186 bits (473), Expect = 1.000e-54 Identity = 103/207 (49.76%), Postives = 128/207 (61.84%), Query Frame = 1
Query: 10 GGPAG-GERMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKEGFFA-----CLMEGQTAAVREHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLDAQ 612
G P+G G VTV CPVVFG AF LG+ DE TH WTLYVRGA EDISYFVSKV F LH SF P RE+ + PYEVTE GWGEF+A+I LHF+DP E PIDV H +KLY +P P PVV E YDE+VFT PK+ F C + + + +EH +FS D+Q L A++ V EL K+ ++R++ +
Sbjct: 31 GSPSGAGGASQHVTVHCPVVFGSAAFWLGRKADETATHRWTLYVRGAGNEDISYFVSKVTFHLHESFAQPVREVLQPPYEVTELGWGEFDARIRLHFRDPGEEPIDVVHSIKLYPSGNVP-PSLKKPVVHEVYDEVVFTSPKQSLFEKMHRDCRTKHSSISFQEH-----LPEFSDAHDMQVLVEAQKLVLDELNRAKEELVRMEQE 231
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: B8BZR5_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZR5_THAPS) HSP 1 Score: 178 bits (452), Expect = 1.560e-51 Identity = 94/215 (43.72%), Postives = 134/215 (62.33%), Query Frame = 1
Query: 31 RMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGE-DISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPA-ERPIDVPHPVKLYADAGMPAPGP------GVPVVTERYDEIVFTDPKEGFFACLMEGQT------AAVREHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLDAQIKDTPAS 633
R+ T C P+ +G +AF LGK+ DE HTH WTLYVR + D+S + KVVF LH SF PTRELTE P+EVTE GWGEF+A I + +K+ + ER + H +KLY P P VPVV+E+YDE+VFT+PK F L+EG + + P ++Y++ + EE+VQK+ AA++++ G+L VKDR+L+ D ++ + S
Sbjct: 1 RLDNTTTCLPLAYGSIAFYLGKEADEYHTHRWTLYVRSPDPKFDLSSAIEKVVFQLHPSFPQPTRELTEPPFEVTESGWGEFDASIRIIWKEVSDERSTLLQHSIKLYPQHVPPNSDPKAYMNTAVPVVSEKYDEVVFTNPKAEFHKLLLEGSRNKTLPYSLSNQPPVMEYFRTYGDEEEVQKMLAAKKFLEGQLREVKDRLLKADTELDEVKTS 215
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: F0Y5R3_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5R3_AURAN) HSP 1 Score: 172 bits (437), Expect = 6.790e-51 Identity = 82/135 (60.74%), Postives = 97/135 (71.85%), Query Frame = 1
Query: 31 RMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKE 435
R VCCP+V+G VAF LG+ DE HTH WTL+VRG HGED+ YFV KVVF LH SF P RE+ E PYEVTEKGWGEFEA + +HF+DP+ERP++ H VKLY D P PVV+E YDE+VFT+P E
Sbjct: 1 RKKNTAVCCPLVYGSVAFWLGRKADEYHTHKWTLFVRGPHGEDLGYFVEKVVFKLHPSFAQPVREIHEPPYEVTEKGWGEFEASVRVHFRDPSERPVEFSHVVKLY-DGTTPQVATQ-PVVSEVYDEVVFTEPHE 133
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: A0A7S1Z287_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z287_9STRA) HSP 1 Score: 176 bits (447), Expect = 1.890e-50 Identity = 98/204 (48.04%), Postives = 126/204 (61.76%), Query Frame = 1
Query: 13 GPAGGERMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGM---PAPGPGVPVVTERYDEIVFTDPKEGFFACLMEGQTAA-VREH-PQLQY-YKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLD 606
G R+ TVC P+V+G +AF LGK DE HTH WTLYVR +GED+S +SKVVF LH SF P RELT P+EVTEKGWGEFEA I + ++DP E+ + H +KLY PA PVV E YDE+VFTDP E F LM ++ H P +Q + ++ EED + L AA++++ EL VKDRI++ D
Sbjct: 22 GVGASPRLLNTTVCVPIVYGSIAFFLGKKADEYHTHRWTLYVRSPNGEDLSTGISKVVFQLHPSFPQPVRELTAPPFEVTEKGWGEFEATIRIVWRDPGEKATVLTHGIKLYPPGLTQITPATTSKEPVVHEFYDEVVFTDPTEAFHRQLMRSSVLPRIQSHEPTVQENFPTYADEEDFKALLAAQKFLEDELRDVKDRIMKAD 225
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: A0A8K1CG01_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG01_PYTOL) HSP 1 Score: 174 bits (441), Expect = 2.880e-50 Identity = 86/197 (43.65%), Postives = 124/197 (62.94%), Query Frame = 1
Query: 31 RMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKEGFFACLMEGQTAAVREHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLDAQIKD 621
R V + P+V+G +A LG+ +E TH W++Y+RGA ED+SY +SKVV TLHASF P R LTE PYEVTE GWGEFE +I LHF DP E+P+D+ H + LY +PA PV++E YDE+VF +P E F+ LM G + +++ +S ++ L+ A+++ E++A KD +L D +IK+
Sbjct: 5 RQKNVVIAKPIVYGSIATYLGRKSEETKTHRWSIYLRGAENEDLSYMLSKVVITLHASFANPVRVLTEPPYEVTEFGWGEFETRIQLHFHDPNEKPVDIIHMLVLYPPGNLPA-STKKPVISEFYDELVFNEPTEFFYKKLMAGPEKEAPAYSMQEHFPVYSDVAILKTLSQAQQFTKDEIQATKDLLLHADLEIKE 200
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Match: A0A2D4BFL2_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFL2_PYTIN) HSP 1 Score: 174 bits (440), Expect = 4.720e-50 Identity = 86/197 (43.65%), Postives = 123/197 (62.44%), Query Frame = 1
Query: 31 RMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHGEDISYFVSKVVFTLHASFEPPTRELTEWPYEVTEKGWGEFEAKITLHFKDPAERPIDVPHPVKLYADAGMPAPGPGVPVVTERYDEIVFTDPKEGFFACLMEGQTAAVREHPQLQYYKDFSAEEDVQKLAAAREYVHGELEAVKDRILRLDAQIKD 621
R V + P+V+G +A LG+ +E TH W++Y+RGA ED+SY VSKVV TLHASF P R LTE PYEVTE GWGEFE +I +HF DP+E+P+D+ H + LY PA PVV+E YDE+VF +P E + LM G HP +++ +S ++ LA A V E++ K+++L+ + ++K+
Sbjct: 5 RQRNVVIAKPIVYGSIATYLGRKAEETKTHRWSIYLRGADNEDLSYIVSKVVITLHASFANPVRVLTEPPYEVTEYGWGEFETRIQIHFHDPSEKPVDIIHMLVLYPPGNQPA-STKKPVVSEFYDELVFNEPTEFLYKKLMAGPEREAPPHPMQEHFPVYSDAAILKTLAQANSLVSDEIDDTKNKLLQAELELKE 200 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351889 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11811 ID=mRNA_11811|Name=jgi.p|Trimin1|351889|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=843bp|location=Sequence derived from alignment at Contig_102:178525..181583+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGCGGAGGAGGGCCAGCAGGCGGAGAGCGGATGAGCGGCGTGACGGTback to top protein sequence of jgi.p|Trimin1|351889 >Trimin1|351889|estExt_Genemark1.C_Ctg_1020027 ID=Trimin1|351889|estExt_Genemark1.C_Ctg_1020027|Name=jgi.p|Trimin1|351889|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=281bp MSGGGPAGGERMSGVTVCCPVVFGCVAFLLGKDGDELHTHCWTLYVRGAHback to top mRNA from alignment at Contig_102:178525..181583+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11811 ID=mRNA_11811|Name=jgi.p|Trimin1|351889|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3059bp|location=Sequence derived from alignment at Contig_102:178525..181583+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_102:178525..181583+ >mRNA_11811 ID=mRNA_11811|Name=jgi.p|Trimin1|351889|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=843bp|location=Sequence derived from alignment at Contig_102:178525..181583+ (Tribonema minus UTEX_B_3156 )back to top |