mRNA_11809 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|148078
Unique NamemRNA_11809
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA)

HSP 1 Score: 237 bits (604), Expect = 2.990e-79
Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK 342
            ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK
Sbjct:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK 114          
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A835YS16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS16_9STRA)

HSP 1 Score: 192 bits (487), Expect = 1.800e-61
Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            ERR+W++ ED+AI  LV  +GVKRWSL+AQ+L+ E+ G VRSGKQCRTRWLNHLDPSLR++PWT EEEQVIY+AQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM
Sbjct:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 109          
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA)

HSP 1 Score: 182 bits (463), Expect = 2.860e-54
Identity = 80/111 (72.07%), Postives = 99/111 (89.19%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333
            ERRAWS++EDDAI  LV  +G KRW++IAQ L+ E+ G  RSGKQCRTRWLNHLDP+++++PW++ EE++IY+AQ+RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NMRR
Sbjct:   38 ERRAWSRKEDDAIVRLVNRHGTKRWAVIAQELNGEISGVFRSGKQCRTRWLNHLDPAIKKEPWSEHEERIIYDAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRR 148          
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S2G8M0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8M0_9STRA)

HSP 1 Score: 181 bits (458), Expect = 7.690e-54
Identity = 80/111 (72.07%), Postives = 96/111 (86.49%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333
            ERRAW+++EDDAI  LV  +G KRW+ IAQ L+ E+ G  RSGKQCRTRWLNHLDP+++++PW+D EE +IY+AQ RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NMRR
Sbjct:   49 ERRAWTRKEDDAIVRLVKRHGTKRWACIAQELNTEIPGVFRSGKQCRTRWLNHLDPAIKKEPWSDTEEHIIYDAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRR 159          
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN)

HSP 1 Score: 172 bits (437), Expect = 1.560e-53
Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327
            +RRAWS++EDDAI  LV  +G KRW++I+Q L+KE+ G  RSGKQCRTRWLNHLDP+++R+PW++ EE VIY AQ RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NM
Sbjct:   25 QRRAWSRKEDDAIVRLVMTHGTKRWAVISQELNKELAG-FRSGKQCRTRWLNHLDPAIKREPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 132          
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S3ZTY8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTY8_9STRA)

HSP 1 Score: 179 bits (454), Expect = 5.510e-53
Identity = 82/111 (73.87%), Postives = 98/111 (88.29%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333
            +RRAWS++EDDAI  LV  +G KRW++I+Q L+KEV G  RSGKQCRTRWLNHLDP ++R+PW+++EE VIY AQ+RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NMRR
Sbjct:   37 QRRAWSRKEDDAIMRLVGKHGTKRWAIISQELNKEVPG-FRSGKQCRTRWLNHLDPGIKREPWSEQEENVIYEAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRR 146          
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S3JRY5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRY5_9STRA)

HSP 1 Score: 175 bits (444), Expect = 4.520e-52
Identity = 78/111 (70.27%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333
            +R+AWS +ED+ I  LV  +G KRW+LI+Q L+ E+ G  RSGKQCRTRWLNHLDP++RR+PW+D EE +IYNAQ+ +GNKWAEIAKLL GRTDNAIKNHWYSTMR+NMRR
Sbjct:   13 QRKAWSCKEDETIVRLVEKHGTKRWALISQELNSEILGVNRSGKQCRTRWLNHLDPTIRREPWSDAEENIIYNAQQTIGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRR 123          
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S3NIV5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIV5_9STRA)

HSP 1 Score: 176 bits (445), Expect = 6.570e-51
Identity = 77/111 (69.37%), Postives = 97/111 (87.39%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333
            +RRAWS++ED+AI  LV  +G KRW++I+Q+L+KEV G++R+GKQCRTRWLNHLDP ++R+PW++ EE +IY AQ  LGNKWAEIAK L GRTDNAIKNHWYSTMR+NMRR
Sbjct:   20 QRRAWSRKEDEAIQRLVEKHGTKRWAVISQDLNKEVPGSLRTGKQCRTRWLNHLDPDIKREPWSEAEENIIYEAQNVLGNKWAEIAKKLPGRTDNAIKNHWYSTMRRNMRR 130          
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A484E484_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E484_BRELC)

HSP 1 Score: 174 bits (442), Expect = 1.940e-50
Identity = 78/111 (70.27%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333
            ERRAW+++EDDAI  LV  YG KRWS+I+ +L+ E  G  R+GKQCRTRWLNHLDP++++DPWT EEEQ+I +AQ RLGNKWAEI+KLL GRTDNAIKNHWYS+MR+ MRR
Sbjct:   19 ERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSENHGTERTGKQCRTRWLNHLDPTIKKDPWTTEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRR 129          
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: H3HDP9_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3HDP9_PHYRM)

HSP 1 Score: 174 bits (440), Expect = 2.210e-50
Identity = 79/111 (71.17%), Postives = 95/111 (85.59%), Query Frame = 1
Query:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333
            ERRAW+++EDDAI  LV  YG KRWS+I+ +L+ E  G  R+GKQCRTRWLNHLDP++++DPWT EEEQVI +AQ RLGNKWAEI+KLL GRTDNAIKNHWYS+MR+ MRR
Sbjct:   19 ERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQVIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRR 129          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZPI2_9STRA2.990e-79100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835YS16_9STRA1.800e-6180.73Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S2ST59_9STRA2.860e-5472.07Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G8M0_9STRA7.690e-5472.07Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
F0Y4P7_AURAN1.560e-5372.48Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A7S3ZTY8_9STRA5.510e-5373.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JRY5_9STRA4.520e-5270.27Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3NIV5_9STRA6.570e-5169.37Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A484E484_BRELC1.940e-5070.27Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
H3HDP9_PHYRM2.210e-5071.17Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:169770..170434 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|148078|gw1.102.67.1
DescriptionMyb-like DNA-binding protein. Source PGD
COG categoryK
Max annot lvl121069|Pythiales
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,1MAR4@121069|Pythiales
Evalue1.62e-51
Seed ortholog115417.EPrPW00000023262
Hectar predicted targeting categoryother localisation
TranscriptId148400
TrackFilteredModels1
ProteinId148078
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148078gene_11809Tribonema minus UTEX_B_3156 geneContig_102 169770..170434 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|148078Trimin1|148078|gw1.102.67.1Tribonema minus UTEX_B_3156 polypeptideContig_102 169770..170434 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11809_2exon_11809_2Tribonema minus UTEX_B_3156 exonContig_102 169770..169965 -
exon_11809_1exon_11809_1Tribonema minus UTEX_B_3156 exonContig_102 170289..170434 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11809CDS_11809Tribonema minus UTEX_B_3156 CDSContig_102 170289..170434 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11809 ID=mRNA_11809|Name=jgi.p|Trimin1|148078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_102:169770..170434- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAGCGGCGCGCGTGGAGCAAAAGAGAGGACGACGCCATCTCCGGTCTCGT
CACGCACTACGGCGTCAAGCGCTGGTCCCTCATCGCTCAGAACCTGAGCA
AGGAGGTCGAGGGCGCCGTGCGCTCGGGCAAGCAATGTCGAACCAGGTGG
CTCAACCACCTCGACCCGTCGCTGCGCCGCGACCCGTGGACCGACGAGGA
AGAGCAGGTCATCTACAACGCGCAGCGCCGCCTCGGCAACAAGTGGGCCG
AGATCGCCAAGCTGCTCACGGGCCGTACCGACAACGCCATCAAGAATCAC
TGGTACTCGACCATGCGCAAGAACATGCGGCGGCGCCAGAAG
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protein sequence of jgi.p|Trimin1|148078

>Trimin1|148078|gw1.102.67.1 ID=Trimin1|148078|gw1.102.67.1|Name=jgi.p|Trimin1|148078|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp
ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRW
LNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNH
WYSTMRKNMRRRQK
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mRNA from alignment at Contig_102:169770..170434-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11809 ID=mRNA_11809|Name=jgi.p|Trimin1|148078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=665bp|location=Sequence derived from alignment at Contig_102:169770..170434- (Tribonema minus UTEX_B_3156 )
GAGCGGCGCGCGTGGAGCAAAAGAGAGGACGACGCCATCTCCGGTCTCGT CACGCACTACGGCGTCAAGCGCTGGTCCCTCATCGCTCAGAACCTGAGCA AGGAGGTCGAGGGCGCCGTGCGCTCGGGCAAGCAATGTCGAACCAGGTAT GCTTCCACAACATTGAAGTACAATATTTGCAAAGCCTCGTGCTGCTGAGT CACCGCGTCCATGTGTGTGCAATGCGGGCCTGCCTGGCGGATACATGCAG GCAGTTGCAGGCGTTTGCCTCACTTGGGGGTGGGGGTGGGGGGGGGGGGG CATGTGGGTATGTGTTGATGCGCGCTGGTCCCTCATCGCTCAGAGCGCAA GCGAGGAGGTTGAGGGCGCCGTGCGCTCCGGCAAGCAATGTCAGACCAGG TACGCATACACAAAATTGAATGGTTACTGCCCCTGATGTGTTGTACCCTT CAACTCTCTCGATGTGCAGGTGGCTCAACCACCTCGACCCGTCGCTGCGC CGCGACCCGTGGACCGACGAGGAAGAGCAGGTCATCTACAACGCGCAGCG CCGCCTCGGCAACAAGTGGGCCGAGATCGCCAAGCTGCTCACGGGCCGTA CCGACAACGCCATCAAGAATCACTGGTACTCGACCATGCGCAAGAACATG CGGCGGCGCCAGAAG
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Coding sequence (CDS) from alignment at Contig_102:169770..170434-

>mRNA_11809 ID=mRNA_11809|Name=jgi.p|Trimin1|148078|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_102:169770..170434- (Tribonema minus UTEX_B_3156 )
GAGCGGCGCGCGTGGAGCAAAAGAGAGGACGACGCCATCTCCGGTCTCGT
CACGCACTACGGCGTCAAGCGCTGGTCCCTCATCGCTCAGAACCTGAGCA
AGGAGGTCGAGGGCGCCGTGCGCTCGGGCAAGCAATGTCGAACCAGGTGG
CTCAACCACCTCGACCCGTCGCTGCGCCGCGACCCGTGGACCGACGAGGA
AGAGCAGGTCATCTACAACGCGCAGCGCCGCCTCGGCAACAAGTGGGCCG
AGATCGCCAAGCTGCTCACGGGCCGTACCGACAACGCCATCAAGAATCAC
TGGTACTCGACCATGCGCAAGAACATGCGGCGGCGCCAGAAG
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