mRNA_11809 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA) HSP 1 Score: 237 bits (604), Expect = 2.990e-79 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK 342 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK Sbjct: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK 114
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A835YS16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS16_9STRA) HSP 1 Score: 192 bits (487), Expect = 1.800e-61 Identity = 88/109 (80.73%), Postives = 100/109 (91.74%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327 ERR+W++ ED+AI LV +GVKRWSL+AQ+L+ E+ G VRSGKQCRTRWLNHLDPSLR++PWT EEEQVIY+AQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM Sbjct: 1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 109
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA) HSP 1 Score: 182 bits (463), Expect = 2.860e-54 Identity = 80/111 (72.07%), Postives = 99/111 (89.19%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333 ERRAWS++EDDAI LV +G KRW++IAQ L+ E+ G RSGKQCRTRWLNHLDP+++++PW++ EE++IY+AQ+RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NMRR Sbjct: 38 ERRAWSRKEDDAIVRLVNRHGTKRWAVIAQELNGEISGVFRSGKQCRTRWLNHLDPAIKKEPWSEHEERIIYDAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRR 148
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S2G8M0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8M0_9STRA) HSP 1 Score: 181 bits (458), Expect = 7.690e-54 Identity = 80/111 (72.07%), Postives = 96/111 (86.49%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333 ERRAW+++EDDAI LV +G KRW+ IAQ L+ E+ G RSGKQCRTRWLNHLDP+++++PW+D EE +IY+AQ RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NMRR Sbjct: 49 ERRAWTRKEDDAIVRLVKRHGTKRWACIAQELNTEIPGVFRSGKQCRTRWLNHLDPAIKKEPWSDTEEHIIYDAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRR 159
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN) HSP 1 Score: 172 bits (437), Expect = 1.560e-53 Identity = 79/109 (72.48%), Postives = 95/109 (87.16%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 327 +RRAWS++EDDAI LV +G KRW++I+Q L+KE+ G RSGKQCRTRWLNHLDP+++R+PW++ EE VIY AQ RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NM Sbjct: 25 QRRAWSRKEDDAIVRLVMTHGTKRWAVISQELNKELAG-FRSGKQCRTRWLNHLDPAIKREPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 132
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S3ZTY8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTY8_9STRA) HSP 1 Score: 179 bits (454), Expect = 5.510e-53 Identity = 82/111 (73.87%), Postives = 98/111 (88.29%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333 +RRAWS++EDDAI LV +G KRW++I+Q L+KEV G RSGKQCRTRWLNHLDP ++R+PW+++EE VIY AQ+RLGNKWAEIAKLL GRTDNAIKNHWYSTMR+NMRR Sbjct: 37 QRRAWSRKEDDAIMRLVGKHGTKRWAIISQELNKEVPG-FRSGKQCRTRWLNHLDPGIKREPWSEQEENVIYEAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRR 146
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S3JRY5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRY5_9STRA) HSP 1 Score: 175 bits (444), Expect = 4.520e-52 Identity = 78/111 (70.27%), Postives = 95/111 (85.59%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333 +R+AWS +ED+ I LV +G KRW+LI+Q L+ E+ G RSGKQCRTRWLNHLDP++RR+PW+D EE +IYNAQ+ +GNKWAEIAKLL GRTDNAIKNHWYSTMR+NMRR Sbjct: 13 QRKAWSCKEDETIVRLVEKHGTKRWALISQELNSEILGVNRSGKQCRTRWLNHLDPTIRREPWSDAEENIIYNAQQTIGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRR 123
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A7S3NIV5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIV5_9STRA) HSP 1 Score: 176 bits (445), Expect = 6.570e-51 Identity = 77/111 (69.37%), Postives = 97/111 (87.39%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333 +RRAWS++ED+AI LV +G KRW++I+Q+L+KEV G++R+GKQCRTRWLNHLDP ++R+PW++ EE +IY AQ LGNKWAEIAK L GRTDNAIKNHWYSTMR+NMRR Sbjct: 20 QRRAWSRKEDEAIQRLVEKHGTKRWAVISQDLNKEVPGSLRTGKQCRTRWLNHLDPDIKREPWSEAEENIIYEAQNVLGNKWAEIAKKLPGRTDNAIKNHWYSTMRRNMRR 130
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: A0A484E484_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E484_BRELC) HSP 1 Score: 174 bits (442), Expect = 1.940e-50 Identity = 78/111 (70.27%), Postives = 95/111 (85.59%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333 ERRAW+++EDDAI LV YG KRWS+I+ +L+ E G R+GKQCRTRWLNHLDP++++DPWT EEEQ+I +AQ RLGNKWAEI+KLL GRTDNAIKNHWYS+MR+ MRR Sbjct: 19 ERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSENHGTERTGKQCRTRWLNHLDPTIKKDPWTTEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRR 129
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Match: H3HDP9_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3HDP9_PHYRM) HSP 1 Score: 174 bits (440), Expect = 2.210e-50 Identity = 79/111 (71.17%), Postives = 95/111 (85.59%), Query Frame = 1 Query: 1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRR 333 ERRAW+++EDDAI LV YG KRWS+I+ +L+ E G R+GKQCRTRWLNHLDP++++DPWT EEEQVI +AQ RLGNKWAEI+KLL GRTDNAIKNHWYS+MR+ MRR Sbjct: 19 ERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQVIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRR 129 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|148078 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11809 ID=mRNA_11809|Name=jgi.p|Trimin1|148078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=342bp|location=Sequence derived from alignment at Contig_102:169770..170434- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAGCGGCGCGCGTGGAGCAAAAGAGAGGACGACGCCATCTCCGGTCTCGTback to top protein sequence of jgi.p|Trimin1|148078 >Trimin1|148078|gw1.102.67.1 ID=Trimin1|148078|gw1.102.67.1|Name=jgi.p|Trimin1|148078|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=114bp ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWback to top mRNA from alignment at Contig_102:169770..170434- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11809 ID=mRNA_11809|Name=jgi.p|Trimin1|148078|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=665bp|location=Sequence derived from alignment at Contig_102:169770..170434- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_102:169770..170434- >mRNA_11809 ID=mRNA_11809|Name=jgi.p|Trimin1|148078|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=342bp|location=Sequence derived from alignment at Contig_102:169770..170434- (Tribonema minus UTEX_B_3156 )back to top |