mRNA_11808 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173432
Unique NamemRNA_11808
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: A0A835ZDJ9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDJ9_9STRA)

HSP 1 Score: 114 bits (284), Expect = 2.470e-32
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 1 
Query:    1 MGDLHRQIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQCYCLTEEQ 156
            MGDLHRQIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQCYCLTEEQ
Sbjct:    1 MGDLHRQIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQCYCLTEEQ 52
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: A0A3P3YIV0_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YIV0_PLABS)

HSP 1 Score: 57.8 bits (138), Expect = 1.590e-8
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 QIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQCYCLTEEQ 156
            ++ E++ +GW +LSQHCP+C+TVL+  +   + CVSC+  C+TEEQ
Sbjct:   14 RLSEKMMQGWTLLSQHCPRCTTVLVGHKTHGVECVSCEMPCVTEEQ 59
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: A0A0G4IL30_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IL30_PLABS)

HSP 1 Score: 57.8 bits (138), Expect = 2.130e-8
Identity = 22/46 (47.83%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:   19 QIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQCYCLTEEQ 156
            ++ E++ +GW +LSQHCP+C+TVL+  +   + CVSC+  C+TEEQ
Sbjct:  586 RLSEKMMQGWTLLSQHCPRCTTVLVGHKTHGVECVSCEMPCVTEEQ 631
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: A0A1D2A727_AUXPR (Uncharacterized protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A727_AUXPR)

HSP 1 Score: 56.6 bits (135), Expect = 4.350e-8
Identity = 21/42 (50.00%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    7 DLHRQIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQ 132
            ++ + + +R+  GW +L Q CP CSTVL+RSR++Q+FCVSC+
Sbjct:  107 EISQSLADRMLHGWTLLGQSCPICSTVLVRSRERQVFCVSCK 148
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: A0A1D1ZSX5_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZSX5_AUXPR)

HSP 1 Score: 56.6 bits (135), Expect = 4.450e-8
Identity = 21/42 (50.00%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    7 DLHRQIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQ 132
            ++ + + +R+  GW +L Q CP CSTVL+RSR++Q+FCVSC+
Sbjct:  112 EISQSLADRMLHGWTLLGQSCPICSTVLVRSRERQVFCVSCK 153
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: A9NSW4_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9NSW4_PICSI)

HSP 1 Score: 56.2 bits (134), Expect = 4.680e-8
Identity = 23/48 (47.92%), Postives = 35/48 (72.92%), Query Frame = 1 
Query:    7 DLHRQIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQCYCLTE 150
            D    I  +L +GWA+LS HCPQC T L+R+R+++++CVSC  + +TE
Sbjct:   26 DSSAAIAVKLLQGWALLSDHCPQCVTPLVRNRERRMYCVSCSQWVITE 73
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: A0A8K1C5E5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5E5_PYTOL)

HSP 1 Score: 55.5 bits (132), Expect = 6.740e-8
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = 1 
Query:    7 DLHRQIGERLSEGWAMLSQHCP--QCSTVLLRSRDQQIFCVSCQCYCLTEEQ 156
            D   ++GE+L +GW ML  HCP  +C T L+R++  Q+FCVSC  + +TEE+
Sbjct:   15 DASARLGEKLLQGWTMLGVHCPSDECFTPLVRNKQGQMFCVSCNRFAITEEE 66
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: UPI001AE72D59 (protein ZNRD2 isoform X2 n=2 Tax=Gallus gallus TaxID=9031 RepID=UPI001AE72D59)

HSP 1 Score: 50.8 bits (120), Expect = 4.150e-6
Identity = 20/41 (48.78%), Postives = 29/41 (70.73%), Query Frame = 1 
Query:   10 LHRQIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQ 132
            + R +G+ L  G+ ML   CPQC T+LL+ R QQ++CV+CQ
Sbjct:   27 ISRALGQYLLRGYRMLGSCCPQCQTILLQDRQQQLYCVTCQ 67
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: A0A7S0D1M1_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D1M1_9EUKA)

HSP 1 Score: 50.1 bits (118), Expect = 1.090e-5
Identity = 22/44 (50.00%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    7 DLHRQIGERLSEGWAMLSQHCPQ--CSTVLLRSRDQQIFCVSCQ 132
            ++  +IG +L  GWAML+++CP+  C  VLLRSRD + +CVSC+
Sbjct:  151 EISDKIGAKLLAGWAMLNEYCPKQTCKCVLLRSRDGEKYCVSCE 194
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BLAST of jgi.p|Trimin1|173432 vs. uniprot
Match: A0A8J9WKZ4_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WKZ4_9CHLO)

HSP 1 Score: 47.0 bits (110), Expect = 5.310e-5
Identity = 18/38 (47.37%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   40 EGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQCYCLTEE 153
            +GW +L   CP+C T+L+R+R++++FCVSC  + L EE
Sbjct:    3 QGWTLLGDQCPRCLTILVRNRERELFCVSCDMF-LREE 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173432 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A835ZDJ9_9STRA2.470e-32100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A3P3YIV0_PLABS1.590e-847.83Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A0G4IL30_PLABS2.130e-847.83Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A1D2A727_AUXPR4.350e-850.00Uncharacterized protein n=2 Tax=Auxenochlorella pr... [more]
A0A1D1ZSX5_AUXPR4.450e-850.00Uncharacterized protein (Fragment) n=1 Tax=Auxenoc... [more]
A9NSW4_PICSI4.680e-847.92Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A8K1C5E5_PYTOL6.740e-846.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI001AE72D594.150e-648.78protein ZNRD2 isoform X2 n=2 Tax=Gallus gallus Tax... [more]
A0A7S0D1M1_9EUKA1.090e-550.00Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A8J9WKZ4_9CHLO5.310e-547.37Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:162662..162817 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173432|e_gw1.102.109.1
DescriptionSjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27)
COG categoryS
Max annot lvl33090|Viridiplantae
EggNOG OGs2D003@1|root,2SCA9@2759|Eukaryota,37XZX@33090|Viridiplantae
Evalue3.34e-09
Seed ortholog554065.XP_005851658.1
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionSjoegren syndrome/scleroderma autoantigen 1
Ec32 orthologEc-06_000320.1
TranscriptId173754
TrackFilteredModels1
ProteinId173432
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173432gene_11808Tribonema minus UTEX_B_3156 geneContig_102 162662..162817 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11808_1exon_11808_1Tribonema minus UTEX_B_3156 exonContig_102 162662..162817 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11808CDS_11808Tribonema minus UTEX_B_3156 CDSContig_102 162662..162817 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173432Trimin1|173432|e_gw1.102.109.1Tribonema minus UTEX_B_3156 polypeptideContig_102 162662..162817 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11808 ID=mRNA_11808|Name=jgi.p|Trimin1|173432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=156bp|location=Sequence derived from alignment at Contig_102:162662..162817- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCGATCTACATAGGCAAATCGGCGAGCGACTCTCCGAGGGCTGGGC
GATGCTGTCTCAGCACTGCCCTCAATGCTCCACGGTGCTGCTGCGCTCCA
GGGACCAGCAAATCTTCTGTGTGAGCTGCCAATGCTACTGCCTCACGGAA
GAACAG
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protein sequence of jgi.p|Trimin1|173432

>Trimin1|173432|e_gw1.102.109.1 ID=Trimin1|173432|e_gw1.102.109.1|Name=jgi.p|Trimin1|173432|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=52bp
MGDLHRQIGERLSEGWAMLSQHCPQCSTVLLRSRDQQIFCVSCQCYCLTE
EQ
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mRNA from alignment at Contig_102:162662..162817-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11808 ID=mRNA_11808|Name=jgi.p|Trimin1|173432|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=156bp|location=Sequence derived from alignment at Contig_102:162662..162817- (Tribonema minus UTEX_B_3156 )
ATGGGCGATCTACATAGGCAAATCGGCGAGCGACTCTCCGAGGGCTGGGC
GATGCTGTCTCAGCACTGCCCTCAATGCTCCACGGTGCTGCTGCGCTCCA
GGGACCAGCAAATCTTCTGTGTGAGCTGCCAATGCTACTGCCTCACGGAA
GAACAG
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Coding sequence (CDS) from alignment at Contig_102:162662..162817-

>mRNA_11808 ID=mRNA_11808|Name=jgi.p|Trimin1|173432|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=156bp|location=Sequence derived from alignment at Contig_102:162662..162817- (Tribonema minus UTEX_B_3156 )
ATGGGCGATCTACATAGGCAAATCGGCGAGCGACTCTCCGAGGGCTGGGC
GATGCTGTCTCAGCACTGCCCTCAATGCTCCACGGTGCTGCTGCGCTCCA
GGGACCAGCAAATCTTCTGTGTGAGCTGCCAATGCTACTGCCTCACGGAA
GAACAG
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