mRNA_11803 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|152547
Unique NamemRNA_11803
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|152547 vs. uniprot
Match: A0A836CN23_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN23_9STRA)

HSP 1 Score: 141 bits (356), Expect = 6.540e-43
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 
Query:    1 EVCFRCNINRPLTKAFTVYAGMQFADKPVSSLRFFLNGDLVWPSETPSELGLKDDDTIECMVEPSG 198
            EVCFRCNINRPLTKAFTVYAGMQFADKPVSSLRFFLNGDLVWPSETPSELGLKDDDTIECMVEPSG
Sbjct:    1 EVCFRCNINRPLTKAFTVYAGMQFADKPVSSLRFFLNGDLVWPSETPSELGLKDDDTIECMVEPSG 66
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BLAST of jgi.p|Trimin1|152547 vs. uniprot
Match: A0A7J7IY81_BUGNE (Small ubiquitin-related modifier n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7IY81_BUGNE)

HSP 1 Score: 50.8 bits (120), Expect = 1.570e-6
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 1 
Query:    1 EVCFRCNINRPLTKAFTVYAGMQFADKPVSSLRFFLNGDLVWPSETPSELGLKDDDTIECMVEPSG 198
            E+ F+  +  P++K    Y+  Q    PV SLRFF +G  +   ETPS LG++DDD IE   E +G
Sbjct:   38 EIHFKVKMTTPMSKLKKTYSQKQ--GLPVGSLRFFFDGRRIDDEETPSSLGMEDDDCIEVYQEQTG 101
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BLAST of jgi.p|Trimin1|152547 vs. uniprot
Match: A0A4V1J212_9FUNG (Ubiquitin-related domain-containing protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4V1J212_9FUNG)

HSP 1 Score: 47.0 bits (110), Expect = 3.760e-5
Identity = 27/66 (40.91%), Postives = 35/66 (53.03%), Query Frame = 1 
Query:    1 EVCFRCNINRPLTKAFTVYAGMQFADKPVSSLRFFLNGDLVWPSETPSELGLKDDDTIECMVEPSG 198
            EV F+      L K    Y   Q   K V S+RF  +G  + P  TP+EL ++DDDTI+ MVE  G
Sbjct:   28 EVFFKIKRTTALKKLMHAYCERQ--GKSVESVRFLYDGIRILPDNTPAELEMEDDDTIDVMVEQVG 91
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BLAST of jgi.p|Trimin1|152547 vs. uniprot
Match: A0A7S2KM55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KM55_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.070e-5
Identity = 23/65 (35.38%), Postives = 38/65 (58.46%), Query Frame = 1 
Query:    1 EVCFRCNINRPLTKAFTVYAGMQFADKPVSSLRFFLNGDLVWPSETPSELGLKDDDTIECMVEPS 195
            E  F+  ++  + K F +YA     D  VSS+ F ++G  + P +TP+ LGLK +D+I C++  S
Sbjct:   61 EAKFKVGMSTKMKKYFKIYATKNKTD--VSSMHFVIDGQDIQPDDTPAALGLKQNDSIHCIISDS 123
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|152547 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A836CN23_9STRA6.540e-43100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A7J7IY81_BUGNE1.570e-640.91Small ubiquitin-related modifier n=1 Tax=Bugula ne... [more]
A0A4V1J212_9FUNG3.760e-540.91Ubiquitin-related domain-containing protein (Fragm... [more]
A0A7S2KM55_9STRA4.070e-535.38Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_102contigContig_102:136831..137028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|152547|gw1.102.105.1
BRITEko00000,ko00001,ko00002,ko03019,ko03029,ko04121,ko04812
KEGG ModuleM00427
KEGG Pathwayko03013,ko05418,map03013,map05418
KEGG koko:K12160
GOsGO:0000228,GO:0000723,GO:0000793,GO:0000794,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005815,GO:0005816,GO:0005856,GO:0005938,GO:0005940,GO:0006139,GO:0006259,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0015630,GO:0016043,GO:0016458,GO:0016925,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0030466,GO:0030702,GO:0030998,GO:0031056,GO:0031057,GO:0031060,GO:0031061,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031386,GO:0031399,GO:0031400,GO:0031974,GO:0031981,GO:0032156,GO:0032200,GO:0032268,GO:0032269,GO:0032446,GO:0033043,GO:0033044,GO:0034641,GO:0035065,GO:0035067,GO:0036211,GO:0040029,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044454,GO:0044464,GO:0044732,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051276,GO:0051569,GO:0051570,GO:0051572,GO:0051573,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0071440,GO:0071441,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0099086,GO:0099568,GO:1901360,GO:1901564,GO:1901983,GO:1901984,GO:1902275,GO:1902679,GO:1903506,GO:1903507,GO:1905268,GO:2000112,GO:2000113,GO:2000756,GO:2000757,GO:2001141,GO:2001251
Preferred nameSMT3
DescriptionUbiquitin homologues
COG categoryO
Max annot lvl4751|Fungi
EggNOG OGsCOG5227@1|root,KOG1769@2759|Eukaryota,3A3FU@33154|Opisthokonta,3P5B7@4751|Fungi,3V29K@5204|Basidiomycota,22A2K@155619|Agaricomycetes,3H5Q5@355688|Agaricomycetes incertae sedis
Evalue1.44e-07
Seed ortholog65672.G4TR31
Hectar predicted targeting categoryother localisation
TranscriptId152869
TrackFilteredModels1
ProteinId152547
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152547gene_11803Tribonema minus UTEX_B_3156 geneContig_102 136831..137028 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11803_1exon_11803_1Tribonema minus UTEX_B_3156 exonContig_102 136831..137028 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11803CDS_11803Tribonema minus UTEX_B_3156 CDSContig_102 136831..137028 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|152547Trimin1|152547|gw1.102.105.1Tribonema minus UTEX_B_3156 polypeptideContig_102 136831..137028 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11803 ID=mRNA_11803|Name=jgi.p|Trimin1|152547|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_102:136831..137028- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAAGTATGCTTCAGATGTAACATCAACAGGCCGCTGACCAAGGCTTTTAC
CGTTTATGCTGGCATGCAGTTCGCCGACAAGCCGGTGTCTTCGCTGCGCT
TCTTCCTTAATGGCGATCTCGTGTGGCCGTCCGAGACGCCCAGCGAACTC
GGCCTTAAGGACGATGACACCATCGAATGCATGGTCGAACCGTCAGGA
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protein sequence of jgi.p|Trimin1|152547

>Trimin1|152547|gw1.102.105.1 ID=Trimin1|152547|gw1.102.105.1|Name=jgi.p|Trimin1|152547|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=66bp
EVCFRCNINRPLTKAFTVYAGMQFADKPVSSLRFFLNGDLVWPSETPSEL
GLKDDDTIECMVEPSG
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mRNA from alignment at Contig_102:136831..137028-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11803 ID=mRNA_11803|Name=jgi.p|Trimin1|152547|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=198bp|location=Sequence derived from alignment at Contig_102:136831..137028- (Tribonema minus UTEX_B_3156 )
GAAGTATGCTTCAGATGTAACATCAACAGGCCGCTGACCAAGGCTTTTAC
CGTTTATGCTGGCATGCAGTTCGCCGACAAGCCGGTGTCTTCGCTGCGCT
TCTTCCTTAATGGCGATCTCGTGTGGCCGTCCGAGACGCCCAGCGAACTC
GGCCTTAAGGACGATGACACCATCGAATGCATGGTCGAACCGTCAGGA
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Coding sequence (CDS) from alignment at Contig_102:136831..137028-

>mRNA_11803 ID=mRNA_11803|Name=jgi.p|Trimin1|152547|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=198bp|location=Sequence derived from alignment at Contig_102:136831..137028- (Tribonema minus UTEX_B_3156 )
GAAGTATGCTTCAGATGTAACATCAACAGGCCGCTGACCAAGGCTTTTAC
CGTTTATGCTGGCATGCAGTTCGCCGACAAGCCGGTGTCTTCGCTGCGCT
TCTTCCTTAATGGCGATCTCGTGTGGCCGTCCGAGACGCCCAGCGAACTC
GGCCTTAAGGACGATGACACCATCGAATGCATGGTCGAACCGTCAGGA
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