mRNA_11732 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|133503
Unique NamemRNA_11732
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: A0A836C8R8_9STRA (FYVE zinc finger-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8R8_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.870e-42
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    1 LGTWMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARLGDGTRALEGMGITAL 186
            LGTWMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARLGDGTRALEGMGITAL
Sbjct:    1 LGTWMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARLGDGTRALEGMGITAL 62
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BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: A0A6H5JNT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 3.530e-14
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   10 WMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARLGDGTR 156
            W+PN+    C  CER FT++ RRHHCRMCGELVC  CSPHR RL D  R
Sbjct:  838 WIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGPCSPHRVRLADEGR 886
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BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: D8LMR5_ECTSI (Zinc finger, FYVE domain containing 28 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMR5_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.280e-13
Identity = 30/49 (61.22%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   10 WMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARLGDGTR 156
            W+PN+    C  CER FT++ RRHHCRMCGELVC  CSPHR RL +  R
Sbjct:   34 WIPNSARNSCLHCERPFTLILRRHHCRMCGELVCGLCSPHRVRLAEEGR 82
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BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: A0A6I8MYZ9_ORNAN (FYVE-type domain-containing protein n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8MYZ9_ORNAN)

HSP 1 Score: 65.9 bits (159), Expect = 6.540e-12
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 WMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARL 141
            W+P+++S CCR C   FT +RRRHHCR CG++ C++CS H A L
Sbjct:   96 WVPDSSSPCCRACRAPFTFLRRRHHCRSCGQIFCSRCSSHSAPL 139
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BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: R1F828_EMIHU (FYVE-type domain-containing protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1F828_EMIHU)

HSP 1 Score: 62.4 bits (150), Expect = 1.350e-11
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:   10 WMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHR 132
            W P+A+   CRLC + FT++RRRHHCR CG++VC+ CS  R
Sbjct:    1 WQPDASQPSCRLCSKPFTLLRRRHHCRSCGQVVCDSCSTGR 41
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BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: UPI0010A8325A (lateral signaling target protein 2 homolog isoform X1 n=3 Tax=Monotremata TaxID=9255 RepID=UPI0010A8325A)

HSP 1 Score: 65.9 bits (159), Expect = 4.590e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:   10 WMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARL 141
            W+P+++S CCR C   FT +RRRHHCR CG++ C++CS H A L
Sbjct:  507 WVPDSSSPCCRACRAPFTFLRRRHHCRSCGQIFCSRCSSHSAPL 550
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BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: A0A812KVS0_SYMPI (Zfyve28 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812KVS0_SYMPI)

HSP 1 Score: 65.1 bits (157), Expect = 5.040e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 GTWMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRA 135
            GTW+P++ +  C  C+  FT+ RRRHHCR CG+L C++CSP RA
Sbjct:   64 GTWLPDSAANACMACDAAFTLFRRRHHCRSCGKLFCDRCSPWRA 107
[Close]
BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: A0A812NAP4_9DINO (Adck1 protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812NAP4_9DINO)

HSP 1 Score: 65.5 bits (158), Expect = 6.370e-11
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:    4 GTWMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARL 141
            GTW+P++ +  C  C+  FT+ RRRHHCR CG L C++CSP RA L
Sbjct:  990 GTWLPDSAAEACMACDAAFTLFRRRHHCRSCGRLFCDRCSPWRAGL 1035
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BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: A0A1Q9CNQ3_SYMMI (Lateral signaling target protein 2-like n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9CNQ3_SYMMI)

HSP 1 Score: 64.7 bits (156), Expect = 8.020e-11
Identity = 24/44 (54.55%), Postives = 33/44 (75.00%), Query Frame = 1 
Query:    4 GTWMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRA 135
            GTW+P++ +  C  C+  FT+ RRRHHCR CG+L C++CSP RA
Sbjct:  130 GTWLPDSAADACMACDAVFTLFRRRHHCRSCGKLFCDRCSPWRA 173
[Close]
BLAST of jgi.p|Trimin1|133503 vs. uniprot
Match: A0A177B5H1_9BILA (Lysosome-associated apoptosis-inducing protein containing PH and FYVE domains n=1 Tax=Intoshia linei TaxID=1819745 RepID=A0A177B5H1_9BILA)

HSP 1 Score: 63.9 bits (154), Expect = 1.150e-10
Identity = 23/42 (54.76%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   10 WMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRA 135
            W+P+ N++ C  C+ +FTV+ RRHHCR CG +VC++CS HRA
Sbjct:  140 WIPDNNAVWCMTCQSSFTVINRRHHCRKCGFVVCDECSKHRA 181
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|133503 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8R8_9STRA2.870e-42100.00FYVE zinc finger-domain-containing protein (Fragme... [more]
A0A6H5JNT5_9PHAE3.530e-1463.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMR5_ECTSI1.280e-1361.22Zinc finger, FYVE domain containing 28 n=1 Tax=Ect... [more]
A0A6I8MYZ9_ORNAN6.540e-1254.55FYVE-type domain-containing protein n=1 Tax=Ornith... [more]
R1F828_EMIHU1.350e-1156.10FYVE-type domain-containing protein (Fragment) n=1... [more]
UPI0010A8325A4.590e-1154.55lateral signaling target protein 2 homolog isoform... [more]
A0A812KVS0_SYMPI5.040e-1154.55Zfyve28 protein n=1 Tax=Symbiodinium pilosum TaxID... [more]
A0A812NAP4_9DINO6.370e-1154.35Adck1 protein n=1 Tax=Symbiodinium natans TaxID=87... [more]
A0A1Q9CNQ3_SYMMI8.020e-1154.55Lateral signaling target protein 2-like n=1 Tax=Sy... [more]
A0A177B5H1_9BILA1.150e-1054.76Lysosome-associated apoptosis-inducing protein con... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_80contigContig_80:222955..225320 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|133503|gw1.80.11.1
BRITEko00000,ko00001,ko01009
KEGG Pathwayko04144,ko04350,map04144,map04350
KEGG koko:K04679
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
Description1-phosphatidylinositol binding
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1841@1|root,KOG1841@2759|Eukaryota
Evalue2.09e-14
Seed ortholog2880.D8LMR5
Hectar predicted targeting categoryother localisation
TranscriptId133825
TrackFilteredModels1
ProteinId133503
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133503gene_11732Tribonema minus UTEX_B_3156 geneContig_80 222955..225320 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|133503Trimin1|133503|gw1.80.11.1Tribonema minus UTEX_B_3156 polypeptideContig_80 222955..225320 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11732_3exon_11732_3Tribonema minus UTEX_B_3156 exonContig_80 222955..222999 -
exon_11732_2exon_11732_2Tribonema minus UTEX_B_3156 exonContig_80 223865..223956 -
exon_11732_1exon_11732_1Tribonema minus UTEX_B_3156 exonContig_80 225272..225320 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11732CDS_11732Tribonema minus UTEX_B_3156 CDSContig_80 225272..225320 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11732 ID=mRNA_11732|Name=jgi.p|Trimin1|133503|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=186bp|location=Sequence derived from alignment at Contig_80:222955..225320- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGGGCACGTGGATGCCCAATGCGAATTCAATGTGCTGCAGGCTCTGCGA
GCGAACGTTTACAGTGGTGCGGCGCCGCCACCACTGCCGCATGTGCGGGG
AACTGGTCTGCAACCAGTGCAGTCCACACCGCGCCAGACTGGGGGACGGC
ACACGCGCGCTAGAGGGCATGGGCATCACAGCGCTC
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protein sequence of jgi.p|Trimin1|133503

>Trimin1|133503|gw1.80.11.1 ID=Trimin1|133503|gw1.80.11.1|Name=jgi.p|Trimin1|133503|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=62bp
LGTWMPNANSMCCRLCERTFTVVRRRHHCRMCGELVCNQCSPHRARLGDG
TRALEGMGITAL
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mRNA from alignment at Contig_80:222955..225320-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11732 ID=mRNA_11732|Name=jgi.p|Trimin1|133503|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2366bp|location=Sequence derived from alignment at Contig_80:222955..225320- (Tribonema minus UTEX_B_3156 )
CTGGGCACGTGGATGCCCAATGCGAATTCAATGTGCTGCAGGCTCTGCGG
TGAGTTGGAGGGGTGAAGCTAGCCCCAATTTCTAAGACTCTAAAAAGCTG
TACAAGATGTGGTGCTGAGCACTGGGGAGATGGGCACGTGGATGTTCAAT
GCGAACTCAATGTGCTGCAAGCTCTGTGGTGAGGATGGTGGCTGCGCCTG
TGGTGGATGCTGCAGGTAATTTCAAACCGAACCCTAACCCTGAGCACTTG
CTAGTTGTAGCCCTCACCCTCAAAGGCTGATGCCAACTCCATGTGCTGCA
GGCTCTGTGGTGAGAAGGGGGCGTAACCCTAACCCTAATGTTAACCCTAC
GCCCCTAGAAGCTGCGGTGGCTGCTGTGTACGTACACGTTGATACACAAT
GCCAACGTGTGCTGCAGGCTCTGTGGTGAGAGGGGGTGTAATCTTAACCC
CCAACTCTAAGAAGCTGCAGTGGCGTTGGCTGCTGCACCTGCTGCAGCCT
GATATTGCCAACCTTAAGCTTTTGAACTAACCTGACGCTAATGCCAATGT
TAATCTGTTACTTAGGTCCGACCCTAACAGGCAGGCTGCTATTGGTTGCT
GTCAGCATGGCTTCTGACCAAACTTCAACCCAACAGGCCGAACTCTAACC
CAGGCAGCGTCGTCGGCTGCAGCTACAGCAGCCTTGTCAATTAAAATCAT
CATGTTGAAGCAGTGTGGCTGCAGCTATAGTGTTTACAGTTGCTATGCTA
AAGCAGTGTGCGACATGGCACTGTGTGGTATTGGGGGTAGGGTTAGAGTT
AGGGCTAGGGTTTTGTTGACAGTCAAAACGAGGCGTACATTTCATATGAG
ACTGCACTAGTAAGATGGCGGTTTATGTGCTCAGCACGGAGCATCCCTGC
GGATTGCTGTGATGCAATGATGCCCACCAACTTGCGACTATGTGTCATCT
CCATTGAGTCCATCTGTGCTTCGCCACCACCTTTATTCTCAGAGTGTGTG
GCAGGGTTAGGTTTACACTACACGTGAAAGTCATGCACTTGCAAGTCTCG
CGTCACCGCCTTTATTCTGAGGGGTTGAGGCAGGATTAGGTTTACTCTAT
ACGTTGAAACTCAGGCGTTTGCATTGTTTGATTACTCATTGCTTGCACAA
TGTGTGACCTCAGTGGTGCAGCGATTTCGGGGCTTTGAATACATAGGGAT
TAGGGCTAGGTTATGGAGAGCTCACGCTGCTGTCGCATCGCTTGCTGGCC
GTGACTTTAGAGCGAACGTTTGCGGTGTTTCGGAATTTGATCAAGGCCTA
GGGTTTGATTGTGGAGCTCATGCACTTGCGCTGCTGCGTCGTTGCTTGCG
TGCCGTGACTCCAGAGCGAACGTTTACAGTGGTGCGGCGCCGCCACCACT
GCCGCATGTGCGGGGAACTGGTCTGCAACCAGTGCAGTCCACACCGCGCC
AGACTGGTGAGTCGCTGTTGAACTTTGAGTACTTCAAGTACTGTAAACTG
GTGCAACCAGCCCGCACCGCGCCAGGCTGGCGAGTCACTGTTGAACTTTC
AAGCTCAGTTTTGAGTGTTTCAAGTACTTACACCACTGCCGCATGTGCGG
CGAATTGGTCTGCAACCAGTGCAGCCCACACCGTGCCCTGGCTGGTGAGT
CACTGTTGCACTTTCAAGCTCAAAACTTCAAGTACACGGCACAACTACTG
AACTTGGAATTTCCAATCTGCGCGTACTTCAGCTTCAATGTCAATGTTAT
AGCGTGCGCAGCACGACATTACTGGCCAGCTCATGATTCACCACCTTGTC
ATCATCGCGCAGGGGGACGGCACACGCGCGCTAGAGGGCATGGGCATCAC
AACACTAGCCCAGCCACTGAGACGTGCTGCCGAGTTTCATTCTGATACAC
AACAGATCACATTGCATTGCCTTAGAGCATGCTGAGTACCCCCCCCCCAT
CCCCCCAGCCCCCCTGCAAACAAAAAAGTTTGCATAGGGGGAGTGCACGC
GTGCGGATATCACAGCACTAGCCAAGCCACTGAGACGCGCTGCCCAGCTT
TTCTTTTCATTCATGGTAGATCACATTAAATTGCCTCACAGAATGCTGAT
TATCTCCTCCCCCCCCCCCCCAAATAAACATCATCGCGCAGGGCGACGGC
ACACGCGCGCTAGAAGGCATGGGCATCACATCGCTCGCCCAGCCGCTGAG
ACACACTGCTCAGTTTTTTTCATTATCAAATTAGTAGATCACATCACATT
GCCTAGAGCATGCTGAGTATCTCCCCCCTTCCCCCCCTCCCCCCCCAAAT
CCCCCCCCCCCCGCCTTTCAGGGGGACGGCACACGCGCGCTAGAGGGCAT
GGGCATCACAGCGCTC
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Coding sequence (CDS) from alignment at Contig_80:222955..225320-

>mRNA_11732 ID=mRNA_11732|Name=jgi.p|Trimin1|133503|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=186bp|location=Sequence derived from alignment at Contig_80:222955..225320- (Tribonema minus UTEX_B_3156 )
CTGGGCACGTGGATGCCCAATGCGAATTCAATGTGCTGCAGGCTCTGCGA
GCGAACGTTTACAGTGGTGCGGCGCCGCCACCACTGCCGCATGTGCGGGG
AACTGGTCTGCAACCAGTGCAGTCCACACCGCGCCAGACTGGGGGACGGC
ACACGCGCGCTAGAGGGCATGGGCATCACAGCGCTC
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