mRNA_1165 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|156444
Unique NamemRNA_1165
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: A0A835ZHE9_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHE9_9STRA)

HSP 1 Score: 532 bits (1371), Expect = 3.660e-190
Identity = 296/296 (100.00%), Postives = 296/296 (100.00%), Query Frame = 1 
Query:    1 MCHPHSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGVPAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLEGSSADLRVLSDRKRWQQVRCALVISLAAL 888
            MCHPHSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGVPAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLEGSSADLRVLSDRKRWQQVRCALVISLAAL
Sbjct:    1 MCHPHSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGVPAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLEGSSADLRVLSDRKRWQQVRCALVISLAAL 296
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BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: D8LT58_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT58_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.570e-39
Identity = 98/268 (36.57%), Postives = 141/268 (52.61%), Query Frame = 1 
Query:    7 HPHSSNDGAKGYLGNLAEAQTAALAALR---ARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGVPAAE-LRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCL 798
            HP ++      Y   L+ +  AAL  LR    R S      L D+  +TL+     E EDL   LLR+LR + +DVE T   L  +++WR + G A+   + P EV G  +AE    L    YPH+ +G DR GRP+L+ +YG FD   L   TT   L RYH WEQE NA LL R +                      +G  ++ Y++++D +G+ +GQ+  + + LLR ++E D +HYP R    +V+NTPPLFG++W  IRG L
Sbjct:    6 HPGAACAEMIDYARRLSSSHEAALGGLRQWLTRESVNLSPLLGDVG-LTLAASCPPEEEDL--VLLRFLRHNAWDVELTRAQLEASLSWRVETGVASNARREPWEVSGCASAEAFEELCRTHYPHYTIGTDRVGRPILVQKYGNFDTSKLQEFTTLPGLLRYHAWEQENNADLLRRTS--------------------ARTGYLVETYAVVMDFKGMSMGQVNRDFLWLLRELSEMDRKHYPGRGGVIFVINTPPLFGLVWQGIRGFL 250
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BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: A0A6H5KCF8_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCF8_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 7.770e-37
Identity = 100/276 (36.23%), Postives = 143/276 (51.81%), Query Frame = 1 
Query:   37 GYLGNLAEAQTAALAALR---ARVSDGQQQGLLDIS-SITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGVPAAE-LRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLEGSSADLRVLSDRKRWQ 849
            GY   L+ +  AAL  LR    R S      L D+  ++ +SC    E EDL   LLR+LR + +DVE T   L  +++WR + G A+   + P EV G  + E    L    YPH+ +G DR GRP+L+ +YG FD   L   TT   L RYH WEQE NA LL R +                      +G  ++ Y++I+D +G+ +GQ+  + + LLR ++E D  HYP R    +V+NTPPLFG+ W  IRG L  + A + +    K W+
Sbjct:   92 GYARRLSPSHEAALGGLRQWLTRESVNISPLLGDVGLALAVSCPP--EEEDL--VLLRFLRHNAWDVELTRAQLEASLSWRIETGVASNARREPWEVSGCASKEAFEELCRTHYPHYTIGTDRAGRPILVQKYGNFDTSKLQEFTTLPGLLRYHAWEQENNADLLRRAS--------------------ARTGYLVETYAVIMDFKGMSMGQVNRDFLWLLRKLSEMDRTHYPGRGGVIFVINTPPLFGLAWQGIRGFLT-TQATVHIFGVEKEWK 342
[Close]
BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: A0A836CLC3_9STRA (CRAL-TRIO domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLC3_9STRA)

HSP 1 Score: 134 bits (336), Expect = 1.160e-33
Identity = 91/281 (32.38%), Postives = 138/281 (49.11%), Query Frame = 1 
Query:   34 KGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGV-PAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLEGSSAD-LRVLSDRKRWQQVRCALV 870
            +G+ G L+E Q  AL  L          GL++  ++ L+      +E L  CLLR+LRA+GF+  + L  L ENV +R +E    L  Q  ++VLG  P A     I   +PHW  G+DR GRPVL  +YG F    LL  TT   + R HVWEQE   RL+ RR+                       G  +D+  +I+D  G+ + Q+T++ +AL++ +A  D   YP      +++NTP LF  +W      L+  + D +++ S  + WQ     L+
Sbjct:   32 EGFHGQLSEPQEGALREL---------YGLVESLNLDLTLVRGQPAEPLRLCLLRFLRANGFNAPKALAQLEENVNFRDRENVVDLLQQKASDVLGCDPEA-----INRYFPHWDFGEDRVGRPVLCKQYGGFVVSELLSLTTMESMVRSHVWEQEMTLRLMRRRS--------------------LARGAIVDSVVVIIDTGGMAMRQVTADFIALMKRVAHVDQAMYPELLGQMFIINTPGLFTYVWKMFAPLLDSRTRDKIKIFSRPRDWQPALLELI 278
[Close]
BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: A0A7S1UE19_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UE19_9STRA)

HSP 1 Score: 132 bits (331), Expect = 3.620e-31
Identity = 86/280 (30.71%), Postives = 141/280 (50.36%), Query Frame = 1 
Query:   13 HSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGV-PAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLE-GSSADLRVLSDRKRW 846
            H +  GA GYLG L E Q   L+  R  V+    +GL    +     D     E  D   LR+LRA  +DVE  +  +  ++ WR   G   +    PA++LG  P A  R      +PHW LG DR+ RP+LL +YG F+   LL +TT  +L RYHVW Q++   ++  + +                      GC ++ Y+++LD+QG+ + Q+T + + L++ IA  D   +P R  T ++VN P +F ++W  +R  L+  + + +++ S ++ W
Sbjct:   16 HPAAGGAPGYLGTLDEEQEELLSQFREMVA---AKGLAAALAQLAEFD-----ESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNR-----YFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQR--------------------EGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDW 262
[Close]
BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: A0A6U4K456_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4K456_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.350e-31
Identity = 86/280 (30.71%), Postives = 141/280 (50.36%), Query Frame = 1 
Query:   13 HSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGV-PAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLE-GSSADLRVLSDRKRW 846
            H +  GA GYLG L E Q   L+  R  V+    +GL    +     D     E  D   LR+LRA  +DVE  +  +  ++ WR   G   +    PA++LG  P A  R      +PHW LG DR+ RP+LL +YG F+   LL +TT  +L RYHVW Q++   ++  + +                      GC ++ Y+++LD+QG+ + Q+T + + L++ IA  D   +P R  T ++VN P +F ++W  +R  L+  + + +++ S ++ W
Sbjct:   16 HPAAGGAPGYLGTLDEEQEELLSQFREMVA---AKGLAAALAQLAEFD-----ESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNR-----YFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQR--------------------EGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDW 262
[Close]
BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: A0A6U4K475_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4K475_9STRA)

HSP 1 Score: 132 bits (331), Expect = 9.820e-31
Identity = 86/280 (30.71%), Postives = 141/280 (50.36%), Query Frame = 1 
Query:   13 HSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGV-PAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLE-GSSADLRVLSDRKRW 846
            H +  GA GYLG L E Q   L+  R  V+    +GL    +     D     E  D   LR+LRA  +DVE  +  +  ++ WR   G   +    PA++LG  P A  R      +PHW LG DR+ RP+LL +YG F+   LL +TT  +L RYHVW Q++   ++  + +                      GC ++ Y+++LD+QG+ + Q+T + + L++ IA  D   +P R  T ++VN P +F ++W  +R  L+  + + +++ S ++ W
Sbjct:   16 HPAAGGAPGYLGTLDEEQEELLSQFREMVA---AKGLAAALAQLAEFD-----ESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNR-----YFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQR--------------------EGCPIETYTIVLDVQGMALTQVTRDFLRLVQQIAAIDQNEFPERLGTLFIVNVPRVFPMVWRGVRPFLDPDTESKIKIFSRKEDW 262
[Close]
BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: A0A7S1UDP5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDP5_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.190e-21
Identity = 73/229 (31.88%), Postives = 112/229 (48.91%), Query Frame = 1 
Query:   13 HSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLSCDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGV-PAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIA 696
            H +  GA GYLG L E Q   L+  R  V+    +GL    +     D     E  D   LR+LRA  +DVE  +  +  ++ WR   G   +    PA++LG  P A  R      +PHW LG DR+ RP+LL +YG F+   LL +TT  +L RYHVW Q++   ++  + +                      GC ++ Y+++LD+QG+ + Q+T + + L + IA
Sbjct:   16 HPAAGGAPGYLGTLDEEQEELLSQFREMVA---AKGLAAALAQLAEFD-----ESPDYAALRFLRACKWDVEVAVARMESHLDWRRDFGFEEIMMLEPAQILGCDPEAVNR-----YFPHWQLGFDRQHRPILLKQYGPFEIWNLLEQTTMEQLLRYHVWWQQKGVEIMKYKGQR--------------------EGCPIETYTIVLDVQGMALTQVTRDFLRLPQQIA 211
[Close]
BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: F0YG95_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YG95_AURAN)

HSP 1 Score: 85.1 bits (209), Expect = 9.930e-15
Identity = 60/233 (25.75%), Postives = 105/233 (45.06%), Query Frame = 1 
Query:  205 RAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGVPAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQ-ITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIW-----GAIRGCLE-------GSSADLRVLSDRKRWQQVRCA 864
            RA   D +     L  +  WR + G AALR Q+PAEVLG        +++  Y   LLG D  GR  L   Y    AR L +     ++ R+H+WEQE+ A ++    R                             +++LD+  + + + + S+ + +++ +A  D  H+P R  TT+++N P +FG++W     GA  G  E        +   + +++D++ W+ +  A
Sbjct:   45 RARRGDAKTAYAFLKADYDWRVEHGVAALRTQSPAEVLGCDPR----VLSQYYERRLLGVDAHGRLCLYQGYKNMLARELKKHVPLEKVTRFHIWEQERAAAIIDELVRTRRRRGGRGPPI-------------QPKMAVMLDVSDMTISRHVNSDFLYVVKTLANYDQNHFPERMGTTFIMNAPSVFGMVWRIATPGAGNGWFEVKPWLDAHTVKKIHIVTDKEDWRTIVAA 260
[Close]
BLAST of jgi.p|Trimin1|156444 vs. uniprot
Match: A0A2I0J120_PUNGR (CRAL-TRIO domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0J120_PUNGR)

HSP 1 Score: 79.3 bits (194), Expect = 6.050e-13
Identity = 68/249 (27.31%), Postives = 111/249 (44.58%), Query Frame = 1 
Query:   97 VSDGQQQGLLDISSITLSCDGYGESEDLD-RCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQTPAEVLGVPAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLRRTTARRLQRYHVWEQEQNARLLARRARXXXXXXXXXXXXXXXXXXXXXSGCDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVNTPPLFGVIWGAIRGCLEG-SSADLRVLSDR 837
            V D ++   +D    TL  DG   S   D   LLR+L+A  FD+ER   +  + + WR + GT  +       +     AEL  ++   YP    G D+ GRPV +   G  DA  L+  TT  R  RYHV E E++  +                           +   +D+ + ILD+QG+G+  +T     L+  + + D  +YP      +++N  P F ++W  IR  L+  ++A + VL ++
Sbjct:   78 VRDIKELQAVDAFRHTLLSDGLLPSRHDDYHMLLRFLKARKFDIERAKCMWADMIQWRKEFGTDTI-------LEDFEFAELNEVLQY-YPQGYHGVDKEGRPVYIEGLGKVDANKLMLVTTMDRYIRYHVREFEKSFAI-------------------KFPACSIAAKRHIDSSTTILDVQGVGLKNLTKSARELIMRLQKIDGDNYPETLFRMFIINAGPGFKLLWSTIRSFLDPRTTAKIHVLGNK 299
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|156444 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZHE9_9STRA3.660e-190100.00CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
D8LT58_ECTSI1.570e-3936.57CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KCF8_9PHAE7.770e-3736.23CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A836CLC3_9STRA1.160e-3332.38CRAL-TRIO domain-containing protein (Fragment) n=1... [more]
A0A7S1UE19_9STRA3.620e-3130.71Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A6U4K456_9STRA9.350e-3130.71Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U4K475_9STRA9.820e-3130.71Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S1UDP5_9STRA3.190e-2131.88Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YG95_AURAN9.930e-1525.75Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A2I0J120_PUNGR6.050e-1327.31CRAL-TRIO domain-containing protein n=1 Tax=Punica... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:1843409..1846323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|156444|e_gw1.1.415.1
Descriptionmacromolecule localization
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG1471@1|root,KOG1471@2759|Eukaryota
Evalue2.57e-40
Seed ortholog2880.D8LT58
Hectar predicted targeting categoryother localisation
TranscriptId156766
TrackFilteredModels1
ProteinId156444
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156444gene_1165Tribonema minus UTEX_B_3156 geneContig_1 1843409..1846323 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1165_1exon_1165_1Tribonema minus UTEX_B_3156 exonContig_1 1843409..1843720 +
exon_1165_2exon_1165_2Tribonema minus UTEX_B_3156 exonContig_1 1844913..1845257 +
exon_1165_3exon_1165_3Tribonema minus UTEX_B_3156 exonContig_1 1846090..1846323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1165CDS_1165Tribonema minus UTEX_B_3156 CDSContig_1 1843409..1843720 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|156444Trimin1|156444|e_gw1.1.415.1Tribonema minus UTEX_B_3156 polypeptideContig_1 1843409..1846323 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1165 ID=mRNA_1165|Name=jgi.p|Trimin1|156444|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=891bp|location=Sequence derived from alignment at Contig_1:1843409..1846323+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCACCCTCACAGCTCCAACGATGGCGCCAAGGGTTATCTGGGTAA
TCTCGCGGAGGCGCAGACTGCTGCGCTCGCGGCCCTGAGGGCTCGCGTCA
GCGATGGGCAGCAGCAGGGTCTGCTGGATATCTCCAGCATCACCCTGTCC
TGCGATGGCTACGGGGAGTCGGAGGACTTGGACCGCTGTCTGCTGCGGTA
CCTGCGGGCTCATGGCTTCGATGTGGAAAGGACTCTGGTGATTCTGGGAG
AGAATGTTGCCTGGAGAGCGCAGGAGGGGACGGCAGCGCTCCGCGCGCAA
ACCCCCGCTGAGGTCCTCGGCGTCCCCGCCGCGGAGCTGCGCGCGCTGAT
CGCCGCGCGCTACCCGCACTGGCTGCTCGGCGACGACCGCCGCGGGCGCC
CCGTGCTGCTGTACCGCTACGGCGCGTTCGACGCGCGCGCGCTGCTGCGG
CGCACGACGGCGCGGCGCCTGCAGCGCTACCACGTCTGGGAGCAGGAGCA
GAACGCGCGGCTGCTCGCGCGGCGCGCGCGGCGGCGGCGCGGCGGCGGCG
ACGGCAGCGGCAGCGGCGGCGGCGCAGGCGGCGCCAGCGGCGGCAGCGGC
TGTGACATGGATGCCTACAGCCTGATACTGGACCTGCAGGGGCTGGGCGT
GGGGCAGATCACGAGCGAGCTCGTCGCGCTGCTGCGCTACATTGCGGAGA
CGGACGCGCGCCACTACCCGCGCCGCTGCGCGACCACGTACGTCGTCAAC
ACGCCACCGCTGTTCGGCGTCATCTGGGGCGCCATCAGGGGGTGCTTGGA
GGGGTCCTCCGCCGACTTGCGCGTCCTGTCGGACCGGAAGCGCTGGCAGC
AGGTGCGCTGCGCTCTTGTCATCTCCCTGGCTGCGCTGTGA
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protein sequence of jgi.p|Trimin1|156444

>Trimin1|156444|e_gw1.1.415.1 ID=Trimin1|156444|e_gw1.1.415.1|Name=jgi.p|Trimin1|156444|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=297bp
MCHPHSSNDGAKGYLGNLAEAQTAALAALRARVSDGQQQGLLDISSITLS
CDGYGESEDLDRCLLRYLRAHGFDVERTLVILGENVAWRAQEGTAALRAQ
TPAEVLGVPAAELRALIAARYPHWLLGDDRRGRPVLLYRYGAFDARALLR
RTTARRLQRYHVWEQEQNARLLARRARRRRGGGDGSGSGGGAGGASGGSG
CDMDAYSLILDLQGLGVGQITSELVALLRYIAETDARHYPRRCATTYVVN
TPPLFGVIWGAIRGCLEGSSADLRVLSDRKRWQQVRCALVISLAAL*
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mRNA from alignment at Contig_1:1843409..1846323+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1165 ID=mRNA_1165|Name=jgi.p|Trimin1|156444|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2915bp|location=Sequence derived from alignment at Contig_1:1843409..1846323+ (Tribonema minus UTEX_B_3156 )
ATGTGCCACCCTCACAGCTCCAACGATGGCGCCAAGGGTTATCTGGGTAA
TCTCGCGGAGGCGCAGACTGCTGCGCTCGCGGCCCTGAGGGCTCGCGTCA
GCGATGGGCAGCAGCAGGGTCTGCTGGATATCTCCAGCATCACCCTGTCC
TGCGATGGCTACGGGGAGTCGGAGGACTTGGACCGCTGTCTGCTGCGGTA
CCTGCGGGCTCATGGCTTCGATGTGGAAAGGACTCTGGTGATTCTGGGAG
AGAATGTTGCCTGGAGAGCGCAGGAGGGGACGGCAGCGCTCCGCGCGCAA
ACCCCCGCTGAGGTAAGGCGATGGCTGTCGGCGTGCTTGAGCATGAGTAT
TCGTGCCAGTAGTTGTGCTGCTCCACAGTCTGTCGTGCGACCCACGAACT
CGCCTCAGGGAGGTGCCAGTGCCAATTACATTGCGCAAGGCATCAACGGG
TGCAGGTACGCAACAGACACGTGCGCAGTTTTCATGTGGCCATCATATGT
GGCCATCATTTGGCCATTTTCGGCGGCCCGTGGACACTGAAGCATTGCTT
AAAATGATGCAATACACCCAAGAGATCACCAAACCATGTACCAGATTGCG
CACAGGGAGGTGGTGCTGTAGTCGCCGGTGAGCGCTGCGGAGCCATCCGC
TCGCGCATCCGCGCTGCGCATCTGCAGCGCTCGCGGCGCACGTGCGCGCC
GATGGGCGCATGCGCCGGGCAAACACGCCCAGCTCCGCTGGCAGTATGCC
ATCACTTCGTGCTGTTGTGGCGCGACTCGCTTGTGTAACTCACGCACAAT
GCGTGCGCTTCCACGCCCTCTGCGAGTGCGTGCGCCCAAACGTCCACGCA
GCACGAGCGAGCGCATCCGCCCACTGCAGCCGGGGCCTGGTCAGCCTATG
CGCTCGGTTCCCGCAGTAGACCGGCTGCTTGATGATGATGCTCAAAGCGT
TTCGAAGAATGTTGAAGTATGCTTGTTTGGGAGGCTGCGAAGGCACCAAG
TGCGCACAGATATCTGAGCGGCGCAGCCGCAGGCAGCGCGGCGGTGTGGG
TCGATAGGGCTAGCTAACCAGCATCTGCCCTCGGCATGCCGCAGCCGGCG
CTCACGCGCTGTGCGCAGCGCTCGCAAATCGCCATCTGTTCCCGATCTGG
TGGTGGGGCGGAGGCAGCGGCGCAACCTACACGCCGTGACGAGGGTTTAG
ACAAACATGATTGAGCCCGAACGTATGTTCACCCACCGCCCTGCGCATGC
GCGCGAGGGGCGTGTTCTGCGCCACGTCCTCGAGGAGCGCTGACCTGATC
GCAGCTCGCTGCAGATAACGCACTGCGATCCACGACTCTTCGAGCTGCGT
GGCGCGTGCAACGCGCTGACGCGCAGACGGATTTCCCTGCACCGCGCTGA
GCGCTGACCCGCGCTGCCGCGAATGCGTACAAACCCACACCCACGCGCAG
CTGAGCGCTGACCCGCGCCGCCGCATACATACATGCCTACCCCCCCCCCC
GCAGGTCCTCGGCGTCCCCGCCGCGGAGCTGCGCGCGCTGATCGCCGCGC
GCTACCCGCACTGGCTGCTCGGCGACGACCGCCGCGGGCGCCCCGTGCTG
CTGTACCGCTACGGCGCGTTCGACGCGCGCGCGCTGCTGCGGCGCACGAC
GGCGCGGCGCCTGCAGCGCTACCACGTCTGGGAGCAGGAGCAGAACGCGC
GGCTGCTCGCGCGGCGCGCGCGGCGGCGGCGCGGCGGCGGCGACGGCAGC
GGCAGCGGCGGCGGCGCAGGCGGCGCCAGCGGCGGCAGCGGCTGTGACAT
GGATGCCTACAGCCTGATACTGGACCTGCAGGGGCTGGGCGTGGGGCAGG
TGTGTTGAGCGCTGCATAGCAGAGTCTGAGTCTGGATCTGGGTCTTGTGT
GAGTTCAAATTGCGTGCTGTCAGCTCGGGGGGGGTAGAGTCGCGGCGGCA
GCGAATGCGGCAGCGGCCACCGCGCAACAAGCATTCGCACCGGCCGCGAA
GTGCCTCGCGCGGCGTGACGTGCTGCCGCGTGTCGCTCGCACCACGTTCA
TGCTCTCGGTGCTCGCTGCGATTCGCCGATTCCGCTGACGGTGCTTACAT
CGCTGTGCAGCTTGAAGACCGACAGCCGGCTCTACTCTATGTGTGAGGCG
GCGGCCATCATGCGCAGCTGGCGCTACTCGTGCCGTGCCAACAACGGTGC
AGCTCTGGCCCAGTCTCGCGGCGCTCACTGCCATTTCTCCACGCGGGGGG
GGGCGGGGGGGGCAGATATCACGAGCGAGCTCACCGCGCTGCTGCGCTAC
GTCGCGTAGATGAATGAGCGGCACTACTTGCGCCTCTACGCCACCATATT
GCGTCGTCAAGACGCCGCCACGTAGCACTTCCCCGCATGGTCGATACACC
ACCCTTGTCGTCTACGCAGCTGTTCGTTGGCGGGTTCTGACCGCCAGTCG
TGTGTGCGACGTTTTCGCGCGACGCAGATCACGAGCGAGCTCGTCGCGCT
GATGCGCTACATTGCGGAGACGGACGCGCGCCACTACCCGCGCCGCTGCG
GCACCATGCTGCGTCTGCGTCGTCAACATGCTGCCGCTTAAGCTCGCCTA
CGTGGCCGGCGCACCACGCGCATCACCTACGCAGCTGTTCTCTGAGGCAT
TTGCTGTGCGCTCATCGCTGTGTTGACGCAGATCACGAGCGAGCTCGTCG
CGCTGCTGCGCTACATTGCGGAGACGGACGCGCGCCACTACCCGCGCCGC
TGCGCGACCACGTACGTCGTCAACACGCCACCGCTGTTCGGCGTCATCTG
GGGCGCCATCAGGGGGTGCTTGGAGGGGTCCTCCGCCGACTTGCGCGTCC
TGTCGGACCGGAAGCGCTGGCAGCAGGTGCGCTGCGCTCTTGTCATCTCC
CTGGCTGCGCTGTGA
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Coding sequence (CDS) from alignment at Contig_1:1843409..1846323+

>mRNA_1165 ID=mRNA_1165|Name=jgi.p|Trimin1|156444|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=891bp|location=Sequence derived from alignment at Contig_1:1843409..1846323+ (Tribonema minus UTEX_B_3156 )
ATGTGCCACCCTCACAGCTCCAACGATGGCGCCAAGGGTTATCTGGGTAA
TCTCGCGGAGGCGCAGACTGCTGCGCTCGCGGCCCTGAGGGCTCGCGTCA
GCGATGGGCAGCAGCAGGGTCTGCTGGATATCTCCAGCATCACCCTGTCC
TGCGATGGCTACGGGGAGTCGGAGGACTTGGACCGCTGTCTGCTGCGGTA
CCTGCGGGCTCATGGCTTCGATGTGGAAAGGACTCTGGTGATTCTGGGAG
AGAATGTTGCCTGGAGAGCGCAGGAGGGGACGGCAGCGCTCCGCGCGCAA
ACCCCCGCTGAGGTCCTCGGCGTCCCCGCCGCGGAGCTGCGCGCGCTGAT
CGCCGCGCGCTACCCGCACTGGCTGCTCGGCGACGACCGCCGCGGGCGCC
CCGTGCTGCTGTACCGCTACGGCGCGTTCGACGCGCGCGCGCTGCTGCGG
CGCACGACGGCGCGGCGCCTGCAGCGCTACCACGTCTGGGAGCAGGAGCA
GAACGCGCGGCTGCTCGCGCGGCGCGCGCGGCGGCGGCGCGGCGGCGGCG
ACGGCAGCGGCAGCGGCGGCGGCGCAGGCGGCGCCAGCGGCGGCAGCGGC
TGTGACATGGATGCCTACAGCCTGATACTGGACCTGCAGGGGCTGGGCGT
GGGGCAGATCACGAGCGAGCTCGTCGCGCTGCTGCGCTACATTGCGGAGA
CGGACGCGCGCCACTACCCGCGCCGCTGCGCGACCACGTACGTCGTCAAC
ACGCCACCGCTGTTCGGCGTCATCTGGGGCGCCATCAGGGGGTGCTTGGA
GGGGTCCTCCGCCGACTTGCGCGTCCTGTCGGACCGGAAGCGCTGGCAGC
AGGTGCGCTGCGCTCTTGTCATCTCCCTGGCTGCGCTGTGA
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