mRNA_11629 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173841
Unique NamemRNA_11629
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: A0A835YUX5_9STRA (Seven in absentia n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUX5_9STRA)

HSP 1 Score: 166 bits (420), Expect = 1.890e-52
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSVTCRNLALEALCEGHQFPCPHSTHGCTRQLELRDLRY 219
            VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSVTCRNLALEALCEGHQFPCPHSTHGCTRQLELRDLRY
Sbjct:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSVTCRNLALEALCEGHQFPCPHSTHGCTRQLELRDLRY 73
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BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: A0A1B6L0X8_9HEMI (E3 ubiquitin-protein ligase n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6L0X8_9HEMI)

HSP 1 Score: 79.0 bits (193), Expect = 1.340e-16
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSV-TCRNLALEALCEGHQFPCPHSTHGCTRQL 198
            VC+    PPILQC  GH+VCS+C P++T CP CRG +   RNLA+E +     FPC +ST GCT  L
Sbjct:   61 VCFDYVLPPILQCQSGHLVCSSCRPKLTCCPTCRGPLGNIRNLAMEKVASTVLFPCKYSTSGCTMSL 127
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BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: A0A6P4JWI7_DROBP (E3 ubiquitin-protein ligase n=2 Tax=Drosophila bipectinata TaxID=42026 RepID=A0A6P4JWI7_DROBP)

HSP 1 Score: 80.1 bits (196), Expect = 3.260e-16
Identity = 33/63 (52.38%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSVT-CRNLALEALCEGHQFPCPHSTHGC 186
            VC+G   PPI+QC +GH++CSTC P++T+CPVCR +++  RNLA+E +     FPC HS+ GC
Sbjct:   69 VCFGYMMPPIMQCSRGHLICSTCRPKLTACPVCRVTMSNIRNLAMEKVASKLVFPCKHSSCGC 131
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BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: A0A1B6KMN2_9HEMI (E3 ubiquitin-protein ligase n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6KMN2_9HEMI)

HSP 1 Score: 79.0 bits (193), Expect = 6.590e-16
Identity = 35/67 (52.24%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSV-TCRNLALEALCEGHQFPCPHSTHGCTRQL 198
            VC+    PPILQC  GH+VCS+C P++T CP CRG +   RNLA+E +     FPC +ST GCT  L
Sbjct:   47 VCFDYVLPPILQCQSGHLVCSSCRPKLTCCPTCRGPLGNIRNLAMEKVASTVLFPCKYSTSGCTMSL 113
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BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: UPI000BA7EC5E (E3 ubiquitin-protein ligase Siah1-like isoform X1 n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7EC5E)

HSP 1 Score: 75.1 bits (183), Expect = 8.490e-16
Identity = 34/67 (50.75%), Postives = 41/67 (61.19%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSV-TCRNLALEALCEGHQFPCPHSTHGCTRQL 198
            VC+    PPILQC  GH+VCSTC  +IT CP CR  +   RNLA+E +     FPC +S  GC  QL
Sbjct:   36 VCFEFVLPPILQCQNGHLVCSTCRQKITCCPTCRAPIGNIRNLAMEKVASTVMFPCKYSASGCNAQL 102
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BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: T1JGZ3_STRMM (E3 ubiquitin-protein ligase n=1 Tax=Strigamia maritima TaxID=126957 RepID=T1JGZ3_STRMM)

HSP 1 Score: 78.2 bits (191), Expect = 1.030e-15
Identity = 34/67 (50.75%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSV-TCRNLALEALCEGHQFPCPHSTHGCTRQL 198
            VC+    PPILQC  GH+VCSTC P++T CP CRG++   RNLA+E +     FPC +S+ GC   L
Sbjct:   29 VCFDYVLPPILQCQSGHLVCSTCRPKLTCCPTCRGALGNIRNLAMEKVASTVMFPCKYSSSGCAATL 95
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BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: A0A7R9AAN3_9CRUS (E3 ubiquitin-protein ligase n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9AAN3_9CRUS)

HSP 1 Score: 77.8 bits (190), Expect = 1.610e-15
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSV-TCRNLALEALCEGHQFPCPHSTHGCTRQL 198
            VC+    PPILQC  GH+VC+TC P++T CP CRG +   RNLA+E +     FPC ++T GC+  L
Sbjct:   38 VCFDYVLPPILQCQSGHLVCTTCRPKLTCCPTCRGQLGNIRNLAMEKVASTVMFPCKYTTSGCSASL 104
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BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: H9J043_BOMMO (E3 ubiquitin-protein ligase n=38 Tax=Ditrysia TaxID=37567 RepID=H9J043_BOMMO)

HSP 1 Score: 77.8 bits (190), Expect = 1.690e-15
Identity = 34/67 (50.75%), Postives = 43/67 (64.18%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSV-TCRNLALEALCEGHQFPCPHSTHGCTRQL 198
            VC+    PPILQC  GH+VCS+C P+++ CP CRG +   RNLA+E +     FPC HS  GCT  L
Sbjct:   42 VCFDYVLPPILQCQSGHLVCSSCRPKLSCCPTCRGPLGNIRNLAMEKVASNVMFPCKHSNTGCTVTL 108
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BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: A0A7R9BUW8_9CRUS (E3 ubiquitin-protein ligase n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BUW8_9CRUS)

HSP 1 Score: 77.4 bits (189), Expect = 3.290e-15
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSV-TCRNLALEALCEGHQFPCPHSTHGCTRQL 198
            VC+    PPILQC  GH+VCSTC P++T CP CRG++   RNLA+E +     FPC +++ GC   L
Sbjct:   74 VCFDYVLPPILQCSSGHLVCSTCRPKLTCCPTCRGALGNIRNLAMEKVASTVMFPCKYASSGCNVSL 140
[Close]
BLAST of jgi.p|Trimin1|173841 vs. uniprot
Match: A0A6M2D8H1_RHIMP (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2D8H1_RHIMP)

HSP 1 Score: 75.1 bits (183), Expect = 5.210e-15
Identity = 33/71 (46.48%), Postives = 44/71 (61.97%), Query Frame = 1 
Query:    1 VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSVT-CRNLALEALCEGHQFPCPHSTHGCTRQLELRD 210
            VC  +  PPI+QC  GH+VCS+C P + +CP+CR  +   RNLALE + E  +FPC   + GCT  L   D
Sbjct:   20 VCLDSVLPPIVQCRNGHLVCSSCRPNVDTCPICREQLDDIRNLALEKIAEKVKFPCKFKSSGCTLMLSAAD 90
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173841 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YUX5_9STRA1.890e-52100.00Seven in absentia n=1 Tax=Tribonema minus TaxID=30... [more]
A0A1B6L0X8_9HEMI1.340e-1652.24E3 ubiquitin-protein ligase n=1 Tax=Graphocephala ... [more]
A0A6P4JWI7_DROBP3.260e-1652.38E3 ubiquitin-protein ligase n=2 Tax=Drosophila bip... [more]
A0A1B6KMN2_9HEMI6.590e-1652.24E3 ubiquitin-protein ligase n=1 Tax=Graphocephala ... [more]
UPI000BA7EC5E8.490e-1650.75E3 ubiquitin-protein ligase Siah1-like isoform X1 ... [more]
T1JGZ3_STRMM1.030e-1550.75E3 ubiquitin-protein ligase n=1 Tax=Strigamia mari... [more]
A0A7R9AAN3_9CRUS1.610e-1549.25E3 ubiquitin-protein ligase n=1 Tax=Darwinula stev... [more]
H9J043_BOMMO1.690e-1550.75E3 ubiquitin-protein ligase n=38 Tax=Ditrysia TaxI... [more]
A0A7R9BUW8_9CRUS3.290e-1549.25E3 ubiquitin-protein ligase n=1 Tax=Notodromas mon... [more]
A0A6M2D8H1_RHIMP5.210e-1546.48E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Rhi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:540308..540529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173841|e_gw1.107.98.1
BRITEko00000,ko00001,ko01000,ko04121
KEGG Pathwayko04013,ko04115,ko04120,ko04310,map04013,map04115,map04120,map04310
KEGG koko:K04506,ko:K08742
EC2.3.2.27
GOsGO:0000075,GO:0000151,GO:0000209,GO:0000278,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001752,GO:0001754,GO:0002065,GO:0002067,GO:0003674,GO:0003712,GO:0003714,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005768,GO:0005769,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006935,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007264,GO:0007275,GO:0007346,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007465,GO:0008150,GO:0008152,GO:0008270,GO:0009056,GO:0009057,GO:0009605,GO:0009653,GO:0009887,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010466,GO:0010498,GO:0010556,GO:0010558,GO:0010605,GO:0010646,GO:0010648,GO:0010941,GO:0010951,GO:0012505,GO:0016043,GO:0016567,GO:0016579,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0022008,GO:0022402,GO:0022603,GO:0023051,GO:0023052,GO:0023057,GO:0030030,GO:0030111,GO:0030154,GO:0030162,GO:0030163,GO:0030178,GO:0030182,GO:0030855,GO:0031175,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031399,GO:0031410,GO:0031624,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032269,GO:0032446,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0035556,GO:0035883,GO:0036211,GO:0036477,GO:0040011,GO:0042221,GO:0042330,GO:0042706,GO:0042981,GO:0042995,GO:0043005,GO:0043025,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043412,GO:0043621,GO:0043632,GO:0044092,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045165,GO:0045466,GO:0045595,GO:0045664,GO:0045676,GO:0045786,GO:0045861,GO:0045930,GO:0045934,GO:0046530,GO:0046532,GO:0046552,GO:0046872,GO:0046914,GO:0048468,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048592,GO:0048663,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050767,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051603,GO:0051716,GO:0051726,GO:0051960,GO:0052547,GO:0052548,GO:0060255,GO:0060284,GO:0060429,GO:0060548,GO:0060828,GO:0061564,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0080090,GO:0090090,GO:0090596,GO:0097458,GO:0097485,GO:0097708,GO:0120025,GO:0120036,GO:0120039,GO:0140096,GO:0140110,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1902679,GO:1903047,GO:1903320,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000027,GO:2000116,GO:2000117,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Preferred nameSIAH2
DescriptionE3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
COG categoryO
Max annot lvl33208|Metazoa
EggNOG OGsKOG3002@1|root,KOG3002@2759|Eukaryota,38C30@33154|Opisthokonta,3BDKD@33208|Metazoa,3CRMM@33213|Bilateria,41VKS@6656|Arthropoda,3SJAU@50557|Insecta,452DB@7147|Diptera,45CRZ@7148|Nematocera
Evalue1.02e-17
Seed ortholog43151.ADAC009372-PA
Hectar predicted targeting categoryother localisation
TranscriptId174163
TrackFilteredModels1
ProteinId173841
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173841gene_11629Tribonema minus UTEX_B_3156 geneContig_107 540308..540529 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11629_1exon_11629_1Tribonema minus UTEX_B_3156 exonContig_107 540308..540529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11629CDS_11629Tribonema minus UTEX_B_3156 CDSContig_107 540308..540529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173841Trimin1|173841|e_gw1.107.98.1Tribonema minus UTEX_B_3156 polypeptideContig_107 540308..540529 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11629 ID=mRNA_11629|Name=jgi.p|Trimin1|173841|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_107:540308..540529- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCTGTTATGGGACGTCAACGCCCCCCATTCTACAGTGCGGTCAAGGCCA
CGTGGTATGCTCTACATGCCTTCCCAGGATCACAAGCTGCCCTGTCTGCA
GAGGATCGGTTACCTGCAGAAATCTGGCACTGGAAGCCCTCTGCGAGGGT
CACCAGTTCCCCTGCCCGCACTCTACTCATGGATGCACAAGACAGCTGGA
ACTGCGCGATTTAAGGTACTGA
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protein sequence of jgi.p|Trimin1|173841

>Trimin1|173841|e_gw1.107.98.1 ID=Trimin1|173841|e_gw1.107.98.1|Name=jgi.p|Trimin1|173841|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=74bp
VCYGTSTPPILQCGQGHVVCSTCLPRITSCPVCRGSVTCRNLALEALCEG
HQFPCPHSTHGCTRQLELRDLRY*
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mRNA from alignment at Contig_107:540308..540529-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11629 ID=mRNA_11629|Name=jgi.p|Trimin1|173841|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=222bp|location=Sequence derived from alignment at Contig_107:540308..540529- (Tribonema minus UTEX_B_3156 )
GTCTGTTATGGGACGTCAACGCCCCCCATTCTACAGTGCGGTCAAGGCCA
CGTGGTATGCTCTACATGCCTTCCCAGGATCACAAGCTGCCCTGTCTGCA
GAGGATCGGTTACCTGCAGAAATCTGGCACTGGAAGCCCTCTGCGAGGGT
CACCAGTTCCCCTGCCCGCACTCTACTCATGGATGCACAAGACAGCTGGA
ACTGCGCGATTTAAGGTACTGA
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Coding sequence (CDS) from alignment at Contig_107:540308..540529-

>mRNA_11629 ID=mRNA_11629|Name=jgi.p|Trimin1|173841|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=222bp|location=Sequence derived from alignment at Contig_107:540308..540529- (Tribonema minus UTEX_B_3156 )
GTCTGTTATGGGACGTCAACGCCCCCCATTCTACAGTGCGGTCAAGGCCA
CGTGGTATGCTCTACATGCCTTCCCAGGATCACAAGCTGCCCTGTCTGCA
GAGGATCGGTTACCTGCAGAAATCTGGCACTGGAAGCCCTCTGCGAGGGT
CACCAGTTCCCCTGCCCGCACTCTACTCATGGATGCACAAGACAGCTGGA
ACTGCGCGATTTAAGGTACTGA
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