mRNA_11618 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|151642
Unique NamemRNA_11618
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|151642 vs. uniprot
Match: A0A835ZH81_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH81_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.220e-20
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:    1 CVAHKAEGMVDYLIPRCRWQKCTKRPSYGHPGQPPMYCA 117
            CVAHKAEGMVDYLIPRCRWQKCTKRPSYGHPGQPPMYCA
Sbjct:    1 CVAHKAEGMVDYLIPRCRWQKCTKRPSYGHPGQPPMYCA 39
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|151642 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZH81_9STRA2.220e-20100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:461451..462143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|151642|gw1.107.85.1
Hectar predicted targeting categoryother localisation
TranscriptId151964
TrackFilteredModels1
ProteinId151642
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151642gene_11618Tribonema minus UTEX_B_3156 geneContig_107 461451..462143 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11618_1exon_11618_1Tribonema minus UTEX_B_3156 exonContig_107 461451..462143 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11618CDS_11618Tribonema minus UTEX_B_3156 CDSContig_107 461451..462143 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|151642Trimin1|151642|gw1.107.85.1Tribonema minus UTEX_B_3156 polypeptideContig_107 461451..462143 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11618 ID=mRNA_11618|Name=jgi.p|Trimin1|151642|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=693bp|location=Sequence derived from alignment at Contig_107:461451..462143- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCGTCGCTCACAAGGCAGAGGGCATGGTGGATTATCTCATTCCTCGTTG
CAGGTGGCAGAAGTGCACCAAGAGGCCCTCCTACGGCCACCCTGGCCAGC
CCCCCATGTACTGCGCCATGCACAAGGACAACGGCATGATCGACGTCAAG
AACCGGAGGTGCAGGTGCAACACGTGCCAGCGCCTGCCCACGTACGGGCA
CGTGGGCGGCACGGCCATCGTCTGCCGCGTGCACCGCGAGGACGGCATGG
TCGACCTCAAGAACCGCCGCTGCGAGTCCGACGGCTGCACCAAGTGGCCC
ACGTACGGCGTCCAGGGCGAGCGCTCGCGCTTCTGCCTCGCGCACCGCAG
CGACGGCATGGTCGACGTCAAGAACCGCCGCTGCGAGCAGGGCGGCTGCG
ACAAGCGCCCGACGTACGGCTACGAGGGCGAGCGGCCGCGCTTCTGCCTC
GCGCACAAGACGGAGGGCATGTCCGACGTGCGCAACCGCCGCTGCGAGGT
CGCGGGCTGCGTCAAGCGCCCGACGTACGGCTACGTCGGCGGCAAGTCGC
GCTTCTGCCTCGCGCACAAGACGCCTGACATGGTCGACGTCATGGCGCGC
CGCTGCCAGTTCCACGGCTGCTCCGAGCGCCCCACCCACGGCTTTGCGGG
GCGCAAGCCGCGCTGCTGCGCGGCGCACGCGCAGCGCGGCATG
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protein sequence of jgi.p|Trimin1|151642

>Trimin1|151642|gw1.107.85.1 ID=Trimin1|151642|gw1.107.85.1|Name=jgi.p|Trimin1|151642|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=231bp
CVAHKAEGMVDYLIPRCRWQKCTKRPSYGHPGQPPMYCAMHKDNGMIDVK
NRRCRCNTCQRLPTYGHVGGTAIVCRVHREDGMVDLKNRRCESDGCTKWP
TYGVQGERSRFCLAHRSDGMVDVKNRRCEQGGCDKRPTYGYEGERPRFCL
AHKTEGMSDVRNRRCEVAGCVKRPTYGYVGGKSRFCLAHKTPDMVDVMAR
RCQFHGCSERPTHGFAGRKPRCCAAHAQRGM
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mRNA from alignment at Contig_107:461451..462143-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11618 ID=mRNA_11618|Name=jgi.p|Trimin1|151642|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=693bp|location=Sequence derived from alignment at Contig_107:461451..462143- (Tribonema minus UTEX_B_3156 )
TGCGTCGCTCACAAGGCAGAGGGCATGGTGGATTATCTCATTCCTCGTTG
CAGGTGGCAGAAGTGCACCAAGAGGCCCTCCTACGGCCACCCTGGCCAGC
CCCCCATGTACTGCGCCATGCACAAGGACAACGGCATGATCGACGTCAAG
AACCGGAGGTGCAGGTGCAACACGTGCCAGCGCCTGCCCACGTACGGGCA
CGTGGGCGGCACGGCCATCGTCTGCCGCGTGCACCGCGAGGACGGCATGG
TCGACCTCAAGAACCGCCGCTGCGAGTCCGACGGCTGCACCAAGTGGCCC
ACGTACGGCGTCCAGGGCGAGCGCTCGCGCTTCTGCCTCGCGCACCGCAG
CGACGGCATGGTCGACGTCAAGAACCGCCGCTGCGAGCAGGGCGGCTGCG
ACAAGCGCCCGACGTACGGCTACGAGGGCGAGCGGCCGCGCTTCTGCCTC
GCGCACAAGACGGAGGGCATGTCCGACGTGCGCAACCGCCGCTGCGAGGT
CGCGGGCTGCGTCAAGCGCCCGACGTACGGCTACGTCGGCGGCAAGTCGC
GCTTCTGCCTCGCGCACAAGACGCCTGACATGGTCGACGTCATGGCGCGC
CGCTGCCAGTTCCACGGCTGCTCCGAGCGCCCCACCCACGGCTTTGCGGG
GCGCAAGCCGCGCTGCTGCGCGGCGCACGCGCAGCGCGGCATG
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Coding sequence (CDS) from alignment at Contig_107:461451..462143-

>mRNA_11618 ID=mRNA_11618|Name=jgi.p|Trimin1|151642|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=693bp|location=Sequence derived from alignment at Contig_107:461451..462143- (Tribonema minus UTEX_B_3156 )
TGCGTCGCTCACAAGGCAGAGGGCATGGTGGATTATCTCATTCCTCGTTG
CAGGTGGCAGAAGTGCACCAAGAGGCCCTCCTACGGCCACCCTGGCCAGC
CCCCCATGTACTGCGCCATGCACAAGGACAACGGCATGATCGACGTCAAG
AACCGGAGGTGCAGGTGCAACACGTGCCAGCGCCTGCCCACGTACGGGCA
CGTGGGCGGCACGGCCATCGTCTGCCGCGTGCACCGCGAGGACGGCATGG
TCGACCTCAAGAACCGCCGCTGCGAGTCCGACGGCTGCACCAAGTGGCCC
ACGTACGGCGTCCAGGGCGAGCGCTCGCGCTTCTGCCTCGCGCACCGCAG
CGACGGCATGGTCGACGTCAAGAACCGCCGCTGCGAGCAGGGCGGCTGCG
ACAAGCGCCCGACGTACGGCTACGAGGGCGAGCGGCCGCGCTTCTGCCTC
GCGCACAAGACGGAGGGCATGTCCGACGTGCGCAACCGCCGCTGCGAGGT
CGCGGGCTGCGTCAAGCGCCCGACGTACGGCTACGTCGGCGGCAAGTCGC
GCTTCTGCCTCGCGCACAAGACGCCTGACATGGTCGACGTCATGGCGCGC
CGCTGCCAGTTCCACGGCTGCTCCGAGCGCCCCACCCACGGCTTTGCGGG
GCGCAAGCCGCGCTGCTGCGCGGCGCACGCGCAGCGCGGCATG
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