mRNA_11617 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: A0A835ZFL1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFL1_9STRA) HSP 1 Score: 399 bits (1026), Expect = 6.760e-139 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 2
Query: 113 MKQSHPDQQVPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLTELRRALVKQLNVAMLDHQYAAXXXXXXXXXXXXXXXXLPRYDFLQLLAHSQRTLRAMHCAEFSYVTGLTVEE 784
MKQSHPDQQVPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLTELRRALVKQLNVAMLDHQYAAXXXXXXXXXXXXXXXXLPRYDFLQLLAHSQRTLRAMHCAEFSYVTGLTVEE
Sbjct: 1 MKQSHPDQQVPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLTELRRALVKQLNVAMLDHQYAAXXXXXXXXXXXXXXXXLPRYDFLQLLAHSQRTLRAMHCAEFSYVTGLTVEE 224
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: A0A6H5K7B9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7B9_9PHAE) HSP 1 Score: 117 bits (294), Expect = 5.420e-28 Identity = 67/162 (41.36%), Postives = 93/162 (57.41%), Query Frame = 2
Query: 137 QVPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLTELRRALVKQLNVAMLDHQ 622
+V + LN+LVM YLV G+ +AAEHF ESGTD VDL +++ R+ + A+M G +AM L N P +L+ L F L +Q ++EL+ RGDAD AL +A + LAP D +L Q+E+A+ LA L G E R A +LN A+L Q
Sbjct: 39 EVAKGELNELVMNYLVVEGYRDAAEHFVEESGTDAKVDLTTIEERVAIRKAMMQGNVVEAMKLANDLDPTMLDRDRELRFGLLKQRLLELVRRGDADEALSFAAEHLAPEGAQDPAILRQIEEAVTLLAFEDATSSPLSGLLDMEQRHAAAGRLNAAVLQSQ 200
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: UPI000B8F02DC (glucose-induced degradation protein 8 homolog n=1 Tax=Folsomia candida TaxID=158441 RepID=UPI000B8F02DC) HSP 1 Score: 112 bits (279), Expect = 5.660e-26 Identity = 64/163 (39.26%), Postives = 99/163 (60.74%), Query Frame = 2
Query: 137 QVPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLT-ELRRALVKQLNVAMLDHQ 622
QVPR +N L+M YLVT G ++AAE F ESGT+P VDL+++D R+++L + G+ +A+ ++N P LL+ L F L++QH+IELI + DAAL +A + LA ++ +L +LE+ L LA DA ++ G L R+ + +LN A L +
Sbjct: 32 QVPRSEVNKLIMNYLVTEGFKDAAEKFQIESGTEPGVDLKTLDKRIKILEKIQEGEIQKAIHMINAYQPQLLDDNRYLYFHLQQQHLIELIRAKNIDAALKFAQENLADQGEENTEVLEELERTLALLAF-EDAEISPFGDLLALSHRQKVASELNTAFLGQE 193
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: D8U9V7_VOLCA (Uncharacterized protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8U9V7_VOLCA) HSP 1 Score: 110 bits (275), Expect = 1.800e-25 Identity = 63/162 (38.89%), Postives = 98/162 (60.49%), Query Frame = 2
Query: 140 VPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPL-TELRRALVKQLNVAMLDHQ 622
VP+ +N L+M +LVT G+ EAA F++ESGT P V+L ++ RM V A+ G A+A +N P +LE +P L F L++Q +IELI G+ ++ALD+A + LAPLA ++ L +LE+ + LA D + + +G + R+ +LN A+L Q
Sbjct: 25 VPKDDMNKLIMNFLVTEGYVEAARMFAKESGTAPGVNLDAITDRMEVRRALQSGDVEAAVARVNDLDPEILESQPKLFFHLQQQRLIELIRAGNVESALDFAQENLAPLAEENAEFLEELERTVALLAF-EDTNASPVGDLMDVAQRQKTASELNAAILQSQ 185
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: A0A2G8JS59_STIJA (Putative glucose-induced degradation protein 8-like (Fragment) n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JS59_STIJA) HSP 1 Score: 109 bits (273), Expect = 2.990e-25 Identity = 61/160 (38.12%), Postives = 91/160 (56.88%), Query Frame = 2
Query: 137 QVPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLTELRRALVKQLNVAMLD 616
QV R +N L+M YLVT G +EAAE F ESGTDP ++L S+D ++++ AV G+ +A+ ++N P LL+ L F L++QH+IELI + D + AL YA LA +D +L +LE+ L LA R+ + +LN A+L+
Sbjct: 19 QVTRSDMNKLIMNYLVTEGFKEAAEKFQEESGTDPGIELSSLDNKLQIREAVQDGRLEEAITMVNDIHPELLDTNRYLYFHLQQQHLIELIRQRDIEGALAYAQSHLAEHGEEDNNVLPELERTLALLAFEQPDTSPFADLLEVSQRQKVASELNAAILE 178
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: UPI0006C98E41 (glucose-induced degradation protein 8 homolog n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C98E41) HSP 1 Score: 109 bits (272), Expect = 4.930e-25 Identity = 65/177 (36.72%), Postives = 100/177 (56.50%), Query Frame = 2
Query: 110 RMKQSHPDQQVPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLTEL-----RRALVKQLNVAMLDHQY 625
R+++ H QV R +N+L+M YLVT G +EAAE F +ESG P V+L S+D R+R+ A+ G+ +A L+N P LL+ L F L++ H+IELI G + AL +A ++L+ DE +L +LE+ L LA P ++L R+ + +LN A+L +Y
Sbjct: 19 RLEEGH---QVQRTQMNNLIMNYLVTEGFKEAAEKFQQESGVKPAVELDSMDDRIRIRDAIQNGRIEEAKTLVNQLHPELLDNDRYLHFHLQQLHLIELIRSGRIEEALQFAQEQLSEAGESDENILGELERTLALLAFDEPQK-----SPFSDLLHPTHRQKIASELNAAILKMEY 187
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: A0A8J4C3T0_9CHLO (Uncharacterized protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4C3T0_9CHLO) HSP 1 Score: 108 bits (271), Expect = 7.060e-25 Identity = 63/162 (38.89%), Postives = 95/162 (58.64%), Query Frame = 2
Query: 140 VPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPL-TELRRALVKQLNVAMLDHQ 622
+P+ LN L+M +LVT G+ EAA F +ESGT P V+L ++ RM V A+ GG AM +N P +LE +P L F L++Q +IE I G+ ++ALD+A LAPLA ++ L +LE+ + LA D+ + +G + R+ +LN A+L Q
Sbjct: 26 IPKSDLNKLIMNFLVTEGYVEAARVFEKESGTAPGVNLDAITDRMEVRRALQGGDVEAAMERVNDLDPEILESQPKLFFHLQQQRLIEFIRAGNVESALDFAQQNLAPLAEENAEFLEELERTVALLAF-EDSKSSPVGDLMDVAQRQKTASELNAAILQSQ 186
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: A0A0L7R0J7_9HYME (Protein C20orf11 n=2 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7R0J7_9HYME) HSP 1 Score: 108 bits (270), Expect = 9.200e-25 Identity = 63/165 (38.18%), Postives = 93/165 (56.36%), Query Frame = 2
Query: 146 RRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLTEL-----RRALVKQLNVAMLDHQY 625
R +NDL+M YLVT G +EAAE F +ESG +P VDL S+D R+R+ A+ G +A L+N P LL+ L F L++ H+IELI G + AL +A D L+ + +L +LE+ L LA + H + P ++L R+ + LN A+L +Y
Sbjct: 26 RASMNDLIMNYLVTEGFKEAAEKFQQESGVEPTVDLSSLDNRIRIREAIQNGNIQKATELVNQLHPELLDNDRHLYFRLQQLHLIELIRTGKVEEALQFAQDRLSEAGESNNNILCELERTLALLAFD-EPHKS----PYSDLLHPTHRQKIASDLNAAILKMEY 185
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: A0A3B3RN33_9TELE (Glucose-induced degradation protein 8 homolog n=2 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3RN33_9TELE) HSP 1 Score: 107 bits (268), Expect = 1.760e-24 Identity = 61/162 (37.65%), Postives = 98/162 (60.49%), Query Frame = 2
Query: 140 VPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLTELRRALV-KQLNVAMLDHQ 622
+ R +N L+M YL+T G +EAAE F ESG +P VDL S+D R+++ ++ GQ +A+AL+NG P LL+ L F L++QH+IELI + ++AL++A +LA + L ++E+ L LA D + G L ++R V ++N A+LD++
Sbjct: 24 IQRADMNRLIMNYLITEGFKEAAEKFRMESGIEPSVDLDSLDERIKIREMILKGQIQEAVALINGLHPELLDSNRYLYFHLQQQHLIELIRLRETESALEFAQMQLAEQGEESRECLTEMERTLALLAFD-DPQDSPFGDLLNVIQRQKVWSEVNQAVLDYE 184
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Match: A0A1D2NN00_ORCCI (Glucose-induced degradation protein 8 n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2NN00_ORCCI) HSP 1 Score: 107 bits (268), Expect = 2.210e-24 Identity = 60/160 (37.50%), Postives = 96/160 (60.00%), Query Frame = 2
Query: 137 QVPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVDGRMRVLSAVMGGQSSQAMALLNGAFPLLLEGRPALVFALKRQHVIELIERGDADAALDYATDELAPLARDDEGLLAQLEQALMRLALGADAHVALIGPPLT-ELRRALVKQLNVAML 613
Q+PR +N L+M YLVT G ++AAE F ESGT+P VDL ++D R+++L ++ G+ +A+ ++N P LL+ L F L++QH+IELI + + D AL +A + LA ++ +L +LE+ L LA D + G L R+ + + N+A L
Sbjct: 32 QIPRSEINKLIMNYLVTEGFKDAAEKFQDESGTEPGVDLTTLDQRIKILESIQDGKIQEAVQMINSFQPQLLDDNRYLFFHLQQQHLIELIRQKNIDGALKFAQEHLADQGEENSQVLEELERTLALLAF-EDPESSPFGDLLALSHRQKVASEFNIAFL 190 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352075 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11617 ID=mRNA_11617|Name=jgi.p|Trimin1|352075|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=867bp|location=Sequence derived from alignment at Contig_107:456595..458150+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGGGTATTGAGCTCAATTGAGGGACAGGCAGGTGCCGGCTCAAGGATCAback to top protein sequence of jgi.p|Trimin1|352075 >Trimin1|352075|estExt_Genemark1.C_Ctg_1070063 ID=Trimin1|352075|estExt_Genemark1.C_Ctg_1070063|Name=jgi.p|Trimin1|352075|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=225bp MKQSHPDQQVPRRVLNDLVMQYLVTNGHEEAAEHFSRESGTDPPVDLRSVback to top mRNA from alignment at Contig_107:456595..458150+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11617 ID=mRNA_11617|Name=jgi.p|Trimin1|352075|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1556bp|location=Sequence derived from alignment at Contig_107:456595..458150+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_107:456595..458150+ >mRNA_11617 ID=mRNA_11617|Name=jgi.p|Trimin1|352075|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=675bp|location=Sequence derived from alignment at Contig_107:456595..458150+ (Tribonema minus UTEX_B_3156 )back to top |