mRNA_11593 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173846
Unique NamemRNA_11593
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: A0A835ZJ11_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ11_9STRA)

HSP 1 Score: 786 bits (2030), Expect = 6.680e-285
Identity = 465/465 (100.00%), Postives = 465/465 (100.00%), Query Frame = 1
Query:    1 MRHRPSHPSHAPPAPPPADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAPAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYARAHRLERGAAATLEPAAACPLSDFPAHEPSPAPAEALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAESR 1395
            MRHRPSHPSHAPPAPPPADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAPAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYARAHRLERGAAATLEPAAACPLSDFPAHEPSPAPAEALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAESR
Sbjct:    1 MRHRPSHPSHAPPAPPPADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAPAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYARAHRLERGAAATLEPAAACPLSDFPAHEPSPAPAEALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAESR 465          
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: H3G857_PHYRM (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G857_PHYRM)

HSP 1 Score: 351 bits (900), Expect = 1.480e-113
Identity = 210/452 (46.46%), Postives = 279/452 (61.73%), Query Frame = 1
Query:   52 ADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEI----AAPAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYAR--AHRLERGAAATLEPAAACPLSDFPAHEPSPAPAEALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAE 1389
            ADIGEGI EVE+LQWFV+ GD V QF  VCEVQSDKATVEITSRYDG +  +H+ VG M   G+TL++I    A  AA   XXXXX    P +                              + VAA      +         +LT+P+VRR ARE+ +DL  +  +GP+GR+LKGD+  Y +  A    + A +T + AAA           +    + ++PL  +Q+ M + M  ALQ+PH GY DE+ MD +  LR +++     ++    +LSF+P IIKA SLAL  +P+LN+++    T L   A  NI VAMDTP GL+VPN+K V++ S++EIA +L RLQ    AG+LT  DL+GGTF++SNIG+IGGTY SPVL+VPQV IGA+G+++ LPRYDA G + P  LM VSW+ DHRV+DGAT+ARFSN WKG+LE P  ML E
Sbjct:   35 ADIGEGIAEVEVLQWFVKSGDEVKQFQNVCEVQSDKATVEITSRYDGVITKVHYEVGDMAKVGSTLIDIDVDDATAAAVQGXXXXXASSGPPIPRKPVAKGP---------------------VTVAAPVPTPDSDEK------LLTSPSVRRLAREHNIDLHDVEGTGPQGRILKGDLLQYIKVLAAHPPKPATSTGQTAAAVQSPAMDGPNATYLQQDTVVPLTPIQKMMVKSMNAALQIPHFGYADEIQMDALYDLRKELKPL---AESRGVKLSFMPFIIKAASLALKHYPMLNATVNESETELTLVAAHNISVAMDTPAGLIVPNVKNVESKSVMEIAEDLNRLQQLAVAGKLTPSDLTGGTFSISNIGSIGGTYMSPVLMVPQVAIGAIGQIQKLPRYDAEGNVEPVRLMNVSWSGDHRVIDGATMARFSNQWKGYLETPVSMLTE 456          
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: A0A3M6VTC8_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VTC8_9STRA)

HSP 1 Score: 348 bits (892), Expect = 4.400e-112
Identity = 206/452 (45.58%), Postives = 268/452 (59.29%), Query Frame = 1
Query:   52 ADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAPAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAAT---ADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYAR---AHRLERGAAATLEPAAACPLSDFPAHEPSPAPAEALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAE 1389
            ADIGEGI EVE+LQWFV+ G+ V QF  VCEVQSDKATVEITSRYDG V  +++ VG M   G TL++I    A             S +                               VAAT   +    A         +LT+P+VRR A E+ + L  +  +GP GR+LKGD+  + R   A +L   A  T E  AA PL        +    + ++PL  +Q+ M + M  ALQ+PH GY DE+ MD +  LR +++     ++    +LSF+P IIKA SLAL  +P+LN+++    T L   A  NI VAMDTP GL+VPN+K VQT S++EIA +L RLQ     G+L   DLSGGTF++SNIG+IGGTY SPVL+VPQV IGA+G+++ LPRYDA G + P  LM VSW+ DHRV+DGAT+ARFSN WKG+LE P  ML E
Sbjct:   38 ADIGEGIAEVEVLQWFVKSGEKVKQFQNVCEVQSDKATVEITSRYDGVVTKVYYEVGEMAKVGTTLIDIDVDEATARKQGGGKKKTSSGAPIPRKVSTPVSKDVEAVTTP----------VVAATPLLSRILDAPRRVGDGEKLLTSPSVRRLAMEHNIQLHEIEGTGPDGRILKGDLLEFIRVQAAKKLSSSATLTDETVAAMPLPSENGLNATYLQQDMVVPLTPIQKMMTKSMNLALQIPHFGYADEIRMDALYELRKELKPL---AESRGVKLSFMPFIIKAASLALRYYPMLNATLDDSETELTLLASHNISVAMDTPTGLIVPNVKNVQTKSVIEIAEDLHRLQQLADVGKLAPSDLSGGTFSISNIGSIGGTYMSPVLMVPQVAIGAIGQIQKLPRYDAEGNVKPVRLMNVSWSGDHRVIDGATMARFSNQWKGYLETPVSMLTE 476          
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: A0A8K1C4M0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4M0_PYTOL)

HSP 1 Score: 347 bits (891), Expect = 6.810e-112
Identity = 215/456 (47.15%), Postives = 279/456 (61.18%), Query Frame = 1
Query:   52 ADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIA---APAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYAR--AHRLERGAAATLEPA--AACPLSDFPAHEPSPAPAEALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAA---RGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAE 1389
            ADIGEGI EVE+LQWF++ G+ + QF  VCEVQSDKATVEITSRYDG V  +H+  G M   G TL++I    A AA              L T            XXXXX        E E+  A  A    AQ        VLT+P+VRR A+E+ +DL  +  +GP+GRVLK D+  Y R  A   +  A     P+  +A P+     +       + ++PL  +Q+ M + M  AL+VPH GY DE+ MD +  LR D++     RG       +LSF+P IIKA SLAL  HP LN+S++   T +  HA  NI VAMDTP GL+VPNIK V++ SIL+IA EL RLQ    AG+L   DL+GGTF++SNIG++GGTY  PV+LVPQV IGA+G+++TLPR+   G++VP  LM VSW+ DHRV+DGAT+ARFSN WK +LENP  ML+E
Sbjct:   37 ADIGEGIAEVEVLQWFIKEGEPIKQFQNVCEVQSDKATVEITSRYDGIVKKIHYGKGEMAQVGTTLIDIEVDDATAASVQEASKPAQARKGLPTPVGAAKAAPVPKXXXXXPAAPEPVVE-EIPRARVA--AVAQTTRSTDGKVLTSPSVRRLAKEHNIDLFDVEGTGPQGRVLKEDLLEYIRVLASTPKTAAPQVTAPSTVSASPVLSVAGYLEQ----DTVVPLSPIQKMMVKSMNAALKVPHFGYADEIEMDAVYKLREDLKPLALERGV------KLSFMPFIIKAASLALKYHPSLNASVSADETTVTMHAAHNISVAMDTPTGLIVPNIKNVESKSILDIATELNRLQGLATAGKLAPADLTGGTFSISNIGSVGGTYMGPVILVPQVAIGAVGKIQTLPRFAKDGSVVPVRLMNVSWSGDHRVIDGATMARFSNKWKAYLENPVAMLSE 479          
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: D0MQU7_PHYIT (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=10 Tax=Phytophthora TaxID=4783 RepID=D0MQU7_PHYIT)

HSP 1 Score: 347 bits (890), Expect = 9.340e-112
Identity = 212/450 (47.11%), Postives = 278/450 (61.78%), Query Frame = 1
Query:   52 ADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEI----AAPAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYARAHRLERGAAATLEPAAACPLSDFPAHEPSPAPAEALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAE 1389
            ADIGEGI EVE+LQWFV+ GD V QF  VCEVQSDKATVEITSRYDG V  +H+ VG M   G+TL++I    A  AA            P  +           XXXXXXXXXXXXX       V+       A         +LT+P+VRR A+E+ +DL  +  +GP+GR+LKGD+  Y R    +   ++  +   A P         +    + ++PL  +Q+ M + M  ALQ+PH GY DE+ MD +  LR +++     ++    +LSF+P IIKA SLAL  +P+LN+++    T +   A  N+ VAMDTP GL+VPN+K VQ  SILEIA +L RLQ    AG+L   DL+GGTF++SNIG+IGGTY SPVL+VPQV IGA+G+++ LPRYD  G + P  LM VSW+ DHRV+DGAT+ARFSN WK +LE P  ML E
Sbjct:   38 ADIGEGIAEVEVLQWFVKSGDEVKQFQNVCEVQSDKATVEITSRYDGVVTKVHYEVGEMAKVGSTLIDIDVDEATAAATSGGGKKKGDPIPRRAPSPVATEPVAAXXXXXXXXXXXXXPTPVVSRVSL------APRRLEGEEKLLTSPSVRRLAKEHSIDLHDVEGTGPQGRILKGDLLEYIRMRATQPSTSSVSQSTTATPPPVVDGSNATYLQQDTVVPLTPIQKMMVKSMNAALQIPHFGYADEIRMDALYDLRKELKPL---AEARGVKLSFIPFIIKAASLALKHYPMLNATVNESETEVTLVAAHNVSVAMDTPTGLIVPNVKNVQAKSILEIAEDLNRLQQLAVAGKLAPSDLTGGTFSISNIGSIGGTYMSPVLMVPQVAIGAIGQIQKLPRYDTEGNVEPVRLMNVSWSGDHRVIDGATMARFSNQWKEYLETPVSMLTE 478          
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: A0A7S2WK62_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WK62_9STRA)

HSP 1 Score: 346 bits (887), Expect = 2.260e-111
Identity = 213/454 (46.92%), Postives = 272/454 (59.91%), Query Frame = 1
Query:   52 ADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAPAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYARAHRLER------GAAATLEPAAACPLSDFPA----HEPSPAPAEALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALML 1383
            ADIGEGI EVE+LQWFV  GD V QFDRVCEVQSDKATVEI+SRYDG V  +HH VG+MV  G+ L++IA                P   T                            +  A  A AR+          +LTTPAVRR ARE+ +DL  +  +GP GR+LK DV  Y      E       G ++T  P+A   LS  PA    H P+   A+ +  ++G QR M + M+ +LQ+PH  Y DEV M R++ +R+ I        P + +LS+LP +IKA SLA+A +P+LN+S+    T +  H   NIGVAMDTPRGL+VPNIK VQ LSI EI   L  LQA G AG+L E  L+GGTFTLSN+G+IGGTY SPV+ VPQV IGALG+++ +P+    G       +TVSWA DHR++DGAT+ARFSN WK +LE+PA+ML
Sbjct:   50 ADIGEGIAEVEVLQWFVSEGDQVHQFDRVCEVQSDKATVEISSRYDGVVQKIHHDVGSMVEVGSALIDIAVEG--DVAAGSTSVAEPEAETESATPAPTTVAEP---------------VEEAPAAPARSGP--------ILTTPAVRRLAREHDLDLSLVTPTGPGGRILKSDVLDYMEGRAPESSKTSSGGQSSTATPSAPA-LSSAPAAPGVHRPA---ADRVEKIQGFQRIMVKSMRESLQIPHFTYSDEVNMARVSDMRSSINTHLA---PQSKKLSYLPFLIKAASLAMAHYPVLNASIVNNETEVIYHGSHNIGVAMDTPRGLLVPNIKDVQNLSIFEIREALAELQALGQAGKLGEEHLTGGTFTLSNLGSIGGTYMSPVITVPQVAIGALGKMQVVPKVQPNGEFEGQLTLTVSWAGDHRIIDGATMARFSNQWKTYLEDPAVML 471          
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: A0A5D6XY54_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XY54_9STRA)

HSP 1 Score: 346 bits (887), Expect = 3.370e-111
Identity = 230/452 (50.88%), Postives = 300/452 (66.37%), Query Frame = 1
Query:   52 ADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAPAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXE--FELAVAATADARAA-QXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYARAHRLE-RGAAATLEPAAACPLSDFPAHEPSPAPAE--ALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAE 1389
            ADIGEGI EVE+LQWFV+ GDAV QF  VCEVQSDKATVEITSRYDG V  +H++VG M   G TL++I    A            P+ +T   XXXXXXXXXXXXXXXXXXXXXX    ++AV     ARAA +        VLT+P+VRR A+E+G+DL  +  +GP GR+LK D+  + R    + +     L  A+A  ++       S +  E   ++PL  MQ+ M + M  ALQ+PH GY DEV MD +  LR +++     +D    +LSF+P +IKA SLAL + P LN++++   T++   A  NI VAMDTP GL+VPN+K VQ+ SILEIA EL RLQ   +AG+L   DLSGGTF++SNIG+IGGTY SPV+L PQV IGA+G+++TLPR+   G++V   +M VSW+ DHRV+DGAT+ARFSN WK +LE P  ML+E
Sbjct:   38 ADIGEGIAEVEMLQWFVKEGDAVKQFQNVCEVQSDKATVEITSRYDGVVKKVHYSVGEMAKVGTTLIDIEVDDATAAAFHAAAPSKPAAATPTLXXXXXXXXXXXXXXXXXXXXXXXAAVQVAVEVAVPARAASRQPRDADERVLTSPSVRRLAKEHGIDLLEVIGTGPDGRLLKEDLLEHIRMLASQPKIELVQLPSASAKAVAAVGGGRASASYLEEDTVVPLTPMQKMMVKSMNAALQIPHFGYADEVQMDALHRLRQELKPL---ADQRGVKLSFMPFVIKAASLALRQFPSLNATVSADETSVTYVAAHNISVAMDTPTGLIVPNVKDVQSKSILEIAEELNRLQQLASAGKLGVADLSGGTFSVSNIGSIGGTYMSPVILTPQVAIGAIGKIQTLPRFADDGSVVSVRVMNVSWSGDHRVIDGATMARFSNQWKQYLETPVAMLSE 486          
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: A0A485KS23_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KS23_9STRA)

HSP 1 Score: 341 bits (875), Expect = 1.780e-109
Identity = 206/461 (44.69%), Postives = 273/461 (59.22%), Query Frame = 1
Query:   52 ADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAP----AAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYARAHRLERGA---AATLEPAAACPLSDFPAHEPSPAPAEAL-----IPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIR---AARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAE 1389
            ADIGEGI EVE+LQWFV+PGD ++QF  + EVQSDKATVEITSR+DG V  +H+ VG M   G+ L+++       AA            P+                                A AA A    +         VLTTP+VRR ARE+ +DL+ +   G R  +LKGD+  Y R   L  G    AA   PAA            + +  E L     +P+  +Q+ M + M  AL+VPH GY DE+ MD +  LR  ++   A RG       ++++LP++IKA SLAL  HPILN+S++ C   +  HA  NI VAMDTP+GL+VPN+K V++ SILEIA +L RLQA    G+L  +DL+GGTF+LSNIG+IGGTY  PV++VPQV IGA+G+++TLPR+D  G +VP  +M VSW+ DHRV+DGAT+ARFS  WK FLENP  ML+E
Sbjct:   37 ADIGEGIAEVEVLQWFVKPGDKISQFQNLVEVQSDKATVEITSRFDGVVTKVHYEVGGMAKVGSALIDLEVSDEVAAAHNAGSAPKKASTPAAKKVEPLKKAAPSSSGPAPVAPIPQ-------AAAAAAPVSLSSIVRNTSGKVLTTPSVRRLAREHNIDLEDIPVEGDR--ILKGDILNYIR--HLAEGKYQPAAPEAPAAXXXXXXXXXXSSATSTVEFLTESQTVPVNPIQKMMVKSMNAALKVPHFGYADEIEMDALDELRQRLKVVAAERGV------KVTYLPLMIKAASLALKYHPILNASVSDCEGFITMHAHHNISVAMDTPKGLLVPNVKNVESKSILEIAEDLARLQALATEGKLGVQDLTGGTFSLSNIGSIGGTYMGPVIMVPQVAIGAIGKIQTLPRFDKAGNVVPVKIMNVSWSGDHRVIDGATMARFSTKWKNFLENPTSMLSE 480          
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: A0A1V9YPZ4_9STRA (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPZ4_9STRA)

HSP 1 Score: 339 bits (870), Expect = 6.530e-109
Identity = 204/453 (45.03%), Postives = 272/453 (60.04%), Query Frame = 1
Query:   52 ADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAPAAXXXXXXXXXXXXPSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYARAHRLERGAAATLEPAAACPLSDFPAHEPSPA----PAEALIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIR---AARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAE 1389
            +DIGEGI EVE+LQWFV+PGD ++QF  + EVQSDKATVEITSR+DGT+  LH+  G M   G+ L+++    +            P                            X     VA    ARA          VLTTP+VRR ARE+ +DL+ + A G R  +LKGD+  Y + H  E  AAA                  +PA         +P+  +Q+ M + M  AL+VPH GY DE+ M+ +  LR  ++   AARG       ++++LP++IKA SLAL  +PILN+S++     +  HA  NI VAMDTP+GL+VPN+K V++ SIL+IA +LQRLQ  GA G+L   DL+GGTF+LSNIG+IGGTY SPV++VPQV IGALG+++T+PR++A G +VP  LM VSW+ DHRV+DGAT+ARFS  WK FLENP  ML E
Sbjct:   30 SDIGEGIAEVEVLQWFVKPGDKISQFQNLVEVQSDKATVEITSRFDGTITKLHYEPGQMAKVGSALIDL--DVSDEVAAAQNASNAPKSKAPAKKVEPIKKAAPSPAPIAHAPTPXXAAAPVARIPIARA-----NTGGKVLTTPSVRRLAREHNIDLEDVPAEGDR--ILKGDILNYIK-HLAENKAAAPAAXXXXXXXXXXXXTSTTPAFEFLTESTTVPVTPIQKMMVKSMNAALKVPHFGYADEIEMNALDGLRTTLKPLAAARGV------KVTYLPLMIKAASLALKYYPILNASVSDDEAHITMHAHHNISVAMDTPKGLLVPNVKNVESKSILDIAEDLQRLQKLGAEGKLGPNDLTGGTFSLSNIGSIGGTYMSPVIMVPQVAIGALGKIQTVPRFNAAGDVVPVKLMNVSWSGDHRVIDGATMARFSTKWKDFLENPVAMLTE 466          
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Match: D7FZ94_ECTSI (Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ94_ECTSI)

HSP 1 Score: 343 bits (881), Expect = 1.320e-108
Identity = 224/477 (46.96%), Postives = 285/477 (59.75%), Query Frame = 1
Query:   55 DIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQSDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAPAAXXXXXXXXXXXX---------PSLSTXXXXXXXXXXXXXXXXXXXXXXXXXEFELAVAATADARAAQXXXXXXXAVLTTPAVRRAAREYGVDL--QRLRASGPRGRVLKGDVEAYARAHRL----------ERGAAA---TLEPAAACPLSDFPAHEPSPAPAEA----LIPLRGMQRAMAEHMKRALQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSLALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSILEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQVGIGALGRVRTLPRYDAGGA--LVPAPLMTVSWAADHRVVDGATLARFSNAWKGFLENPALMLAESR 1395
            DIGEGI EVE+LQW+V PGD+V+QFD++CEVQSDKA VEITSRYDG V  +H  VG MV TGA L++I   AA                     P LS                           F           +AQ        VL TPAVRR  RE  +DL  + +  +GP GR+LKGDV A+A A             E G AA    LE             E   +  EA     +P++G+QRAM E M++AL+VPHM +CDEV  DR+  LR+D++ A   ++   ARLS+LP+I+KATS+AL   P LN+S++     L  H   NIGVAMDT +GL+VP I  V+ +S+L+IA EL  LQ  GAAG+L E +L+G TFTLSNIG+IGGTYASPV+L PQV IGALGR++ +PR+DA     +V + ++ VSW+ADHRVVDG TLARFSN WK +LENPALMLA++R
Sbjct:  154 DIGEGILEVEVLQWYVAPGDSVSQFDKLCEVQSDKANVEITSRYDGVVRKVHWNVGDMVQTGAVLVDIEERAASSAGSSTPRQPYLSSAESTGVPQLSVPSSPHPAVAPPAPAETVTPESTGGTSFGNGGVVGDLEGSAQARRQ----VLATPAVRRLCREMSIDLALEPIPGTGPGGRLLKGDVLAHASATAKTAASGGPINGEMGTAARESNLEKGWRWRRRKKEGGEQQRSRHEAKETVAVPIKGVQRAMMEAMRKALEVPHMTFCDEVNADRLGKLRSDLKEA---AERRGARLSYLPLIVKATSMALTAFPTLNASLSEDKKFLLQHPGHNIGVAMDTEKGLLVPCIANVEEMSVLDIAEELNTLQRLGAAGKLGEEELAGTTFTLSNIGSIGGTYASPVILHPQVCIGALGRMQRVPRFDAVDTDKVVASKVIPVSWSADHRVVDGGTLARFSNTWKAYLENPALMLADTR 623          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173846 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZJ11_9STRA6.680e-285100.00Dihydrolipoamide acetyltransferase component of py... [more]
H3G857_PHYRM1.480e-11346.46Dihydrolipoamide acetyltransferase component of py... [more]
A0A3M6VTC8_9STRA4.400e-11245.58Dihydrolipoamide acetyltransferase component of py... [more]
A0A8K1C4M0_PYTOL6.810e-11247.15Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MQU7_PHYIT9.340e-11247.11Dihydrolipoamide acetyltransferase component of py... [more]
A0A7S2WK62_9STRA2.260e-11146.92Dihydrolipoamide acetyltransferase component of py... [more]
A0A5D6XY54_9STRA3.370e-11150.88Dihydrolipoamide acetyltransferase component of py... [more]
A0A485KS23_9STRA1.780e-10944.69Dihydrolipoamide acetyltransferase component of py... [more]
A0A1V9YPZ4_9STRA6.530e-10945.03Dihydrolipoamide acetyltransferase component of py... [more]
D7FZ94_ECTSI1.320e-10846.96Dihydrolipoamide acetyltransferase component of py... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:314683..318029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173846|e_gw1.107.92.1
BRITEbr01601,ko00000,ko00001,ko00002,ko01000
KEGG rclassRC00004,RC02727,RC02870
KEGG ReactionR02662,R03174,R04097,R10998
KEGG ModuleM00036
KEGG Pathwayko00280,ko00640,ko01100,ko01110,ko01130,map00280,map00640,map01100,map01110,map01130
KEGG koko:K09699
EC2.3.1.168
Descriptione3 binding domain
COG categoryC
Max annot lvl4776|Peronosporales
EggNOG OGsCOG0508@1|root,KOG0558@2759|Eukaryota,3Q8YW@4776|Peronosporales
Evalue6.47e-116
Seed ortholog67593.Physo108462
Hectar predicted targeting categoryother localisation
TranscriptId174168
TrackFilteredModels1
ProteinId173846
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173846gene_11593Tribonema minus UTEX_B_3156 geneContig_107 314683..318029 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173846Trimin1|173846|e_gw1.107.92.1Tribonema minus UTEX_B_3156 polypeptideContig_107 314683..318029 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11593_1exon_11593_1Tribonema minus UTEX_B_3156 exonContig_107 314683..315324 +
exon_11593_2exon_11593_2Tribonema minus UTEX_B_3156 exonContig_107 315712..315825 +
exon_11593_3exon_11593_3Tribonema minus UTEX_B_3156 exonContig_107 316046..316327 +
exon_11593_4exon_11593_4Tribonema minus UTEX_B_3156 exonContig_107 316961..317122 +
exon_11593_5exon_11593_5Tribonema minus UTEX_B_3156 exonContig_107 317832..318029 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11593CDS_11593Tribonema minus UTEX_B_3156 CDSContig_107 314683..315324 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11593 ID=mRNA_11593|Name=jgi.p|Trimin1|173846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1398bp|location=Sequence derived from alignment at Contig_107:314683..318029+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGACATCGTCCCAGTCACCCCTCTCACGCGCCCCCCGCCCCCCCCCC
CGCAGACATCGGCGAGGGCATCAAGGAGGTGGAGCTGCTGCAGTGGTTCG
TGCGCCCCGGCGACGCCGTCGCGCAGTTCGACCGCGTGTGCGAGGTGCAG
AGCGACAAGGCGACGGTCGAGATCACGTCGCGCTACGACGGCACCGTCGT
CGCGCTGCACCATGCCGTCGGCGCCATGGTGCCCACGGGCGCCACCCTCA
TGGAGATCGCAGCCCCCGCCGCTGCCGCCGCCGCTGTCGCCCCGCCGCCG
CCGGCTTCCCCATCGCTGAGCACTGCAGATACGGCCCCCGCACCGCCCCC
CGTCCTGACATCAGCGTCACCAACCAGCGGCGCCGCCCCCGCAGCAGCAG
AATTCGAGCTCGCTGTTGCCGCCACCGCCGATGCGCGCGCCGCGCAGGGC
GGCGGCGGCGGCGGCGCCGCGGTGCTGACGACGCCCGCGGTGCGCCGCGC
CGCGCGCGAGTACGGCGTCGACCTGCAGCGGCTGCGCGCCAGCGGGCCGC
GCGGGCGCGTGCTCAAGGGCGACGTCGAGGCGTACGCGCGCGCGCACAGG
CTGGAGCGCGGCGCCGCCGCCACGCTCGAACCCGCTGCTGCTTGCCCCCT
GTCCGACTTCCCGGCGCACGAACCGTCTCCGGCGCCGGCCGAGGCGCTGA
TACCGCTGCGCGGCATGCAGCGCGCCATGGCGGAGCACATGAAGCGCGCG
CTGCAGGTGCCGCACATGGGCTACTGCGACGAGGTCCTGATGGACCGCAT
GGCCGCGCTGCGCGCCGACATCCGCGCGGCGCGCGGCGCGTCCGACCCCG
CCGCCGCGCGCCTCAGCTTCCTGCCCATCATCATTAAGGCGACCTCGCTC
GCGCTCGCGCGCCACCCGATACTCAACAGCAGCATGGCGCCGTGCGGCAC
GGCGCTGCAGCCGCACGCGGACCAGAACATCGGCGTCGCGATGGACACGC
CGCGCGGCCTCGTCGTGCCCAACATCAAGCGCGTGCAGACCCTGTCCATA
CTGGAGATTGCCGCGGAGCTGCAGCGGCTGCAGGCGGAGGGCGCGGCGGG
GCGCCTGACGGAGCGCGACCTCAGCGGCGGCACCTTCACGCTGTCCAACA
TCGGCACCATCGGCGGCACGTACGCGTCGCCCGTGCTGCTGGTCCCGCAG
GTCGGCATCGGCGCCCTCGGGCGCGTGCGCACGCTGCCGCGCTACGACGC
GGGCGGCGCGCTCGTGCCGGCGCCGCTCATGACGGTGTCGTGGGCCGCGG
ACCACCGCGTGGTCGACGGCGCGACGCTCGCGCGCTTCTCCAACGCGTGG
AAGGGCTTCCTCGAGAACCCCGCGCTCATGCTCGCCGAGTCGCGCTGA
back to top

protein sequence of jgi.p|Trimin1|173846

>Trimin1|173846|e_gw1.107.92.1 ID=Trimin1|173846|e_gw1.107.92.1|Name=jgi.p|Trimin1|173846|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=466bp
MRHRPSHPSHAPPAPPPADIGEGIKEVELLQWFVRPGDAVAQFDRVCEVQ
SDKATVEITSRYDGTVVALHHAVGAMVPTGATLMEIAAPAAAAAAVAPPP
PASPSLSTADTAPAPPPVLTSASPTSGAAPAAAEFELAVAATADARAAQG
GGGGGAAVLTTPAVRRAAREYGVDLQRLRASGPRGRVLKGDVEAYARAHR
LERGAAATLEPAAACPLSDFPAHEPSPAPAEALIPLRGMQRAMAEHMKRA
LQVPHMGYCDEVLMDRMAALRADIRAARGASDPAAARLSFLPIIIKATSL
ALARHPILNSSMAPCGTALQPHADQNIGVAMDTPRGLVVPNIKRVQTLSI
LEIAAELQRLQAEGAAGRLTERDLSGGTFTLSNIGTIGGTYASPVLLVPQ
VGIGALGRVRTLPRYDAGGALVPAPLMTVSWAADHRVVDGATLARFSNAW
KGFLENPALMLAESR*
back to top

mRNA from alignment at Contig_107:314683..318029+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11593 ID=mRNA_11593|Name=jgi.p|Trimin1|173846|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3347bp|location=Sequence derived from alignment at Contig_107:314683..318029+ (Tribonema minus UTEX_B_3156 )
ATGAGACATCGTCCCAGTCACCCCTCTCACGCGCCCCCCGCCCCCCCCCC CGCAGACATCGGCGAGGGCATCAAGGAGGTGGAGCTGCTGCAGTGGTTCG TGCGCCCCGGCGACGCCGTCGCGCAGTTCGACCGCGTGTGCGAGGTGCAG AGCGACAAGGCGACGGTCGAGATCACGTCGCGCTACGACGGCACCGTCGT CGCGCTGCACCATGCCGTCGGCGCCATGGTGCCCACGGGCGCCACCCTCA TGGAGATCGCAGCCCCCGCCGCTGCCGCCGCCGCTGTCGCCCCGCCGCCG CCGGCTTCCCCATCGCTGAGCACTGCAGATACGGCCCCCGCACCGCCCCC CGTCCTGACATCAGCGTCACCAACCAGCGGCGCCGCCCCCGCAGCAGCAG AATTCGAGCTCGCTGTTGCCGCCACCGCCGATGCGCGCGCCGCGCAGGGC GGCGGCGGCGGCGGCGCCGCGGTGCTGACGACGCCCGCGGTGCGCCGCGC CGCGCGCGAGTACGGCGTCGACCTGCAGCGGCTGCGCGCCAGCGGGCCGC GCGGGCGCGTGCTCAAGGGCGACGTCGAGGCGTACGCGCGCGCGCACAGG CTGGAGCGCGGCGCCGCCGCCACGCTCGAACCCGCTGCTGCTGTGGCGGC GGCGGCAGCGCCATCCGTGATGCTGAACATTGCGCCGGCGGTGACGGTTC GCTGGGGGCGCCTCGAGCGCCCGCCGCTCAACGGCGGCAGCAGCGGCGCA GCGGCGGCGCACATTAACGGCGGCGCACACATGAGACTGAACGGCAGCGC AAGCACCCCTGTGCCTGCAGCGCTGCCGTCATTGCCGCCGCCGCCTCCGC CAGCTGTTCAAGCGCCGGCGCGGCCTCGTGCAGCTGAGGCTCAAGCGCAA CTGCCGCCGCCTTCGCCGGCAGTGTTCGTGGCGCCGCCGCCGCACCAGCA GCTGCAGCCGCAAGCACCGCCGCCGCAGCAGCAGGACTGGCAGCAGCAGC AGCAGCGCCACCAGCAGCAGCAGCAGCAGTGCCCCCTGTCCGACTTCCCG GCGCACGAACCGTCTCCGGCGCCGGCCGAGGCGCTGATACCGCTGCGCGG CATGCAGCGCGCCATGGCGGAGCACATGAAGCGCGCGCTGCAGGTGAGCG CGCGGTGCTGCTGTGGCTCGCGGCGACCGAGACACTCGTGCGCCCTGAGT CGCATTCCGAGTCTTGCTTCACATCGCACAATGACCTGTTCAAAACGACA TTCAAGTTGGCGCAAATCGCAAGTAGCAGTACTCTCGCCAGGGTCCTCCG CGGCGCCTGCCAAGTCCCTCACCCGCAGTTGCGCCCCCCTACCCCCCTTT CCGCGCGCGGCAGGTGCCGCACATGGGCTACTGCGACGAGGTCCTGATGG ACCGCATGGCCGCGCTGCGCGCCGACATCCGCGCGGCGCGCGGCGCGTCC GACCCCGCCGCCGCGCGCCTCAGCTTCCTGCCCATCATCATTAAGGCGAC CTCGCTCGCGCTCGCGCGCCACCCGATACTCAACAGCAGCATGGCGCCGT GCGGCACGGCGCTGCAGCCGCACGCGGACCAGAACATCGGCGTCGCGATG GACACGCCGCGCGGCCTCGTCGTGCCCAACATCAAGCGCGTGCAGGTGAG CGCTGCTGCTTGTGAACGCCGCCCCCCCCCCCCCCCCTCGCCCGTTAGGT ACCTATGTATGCTCAGCAGGCGAGGGATGCGACGCGCGGCCTCGTCGTGC CTGACGCCAAGCGCGTGCAGGTGAGCGCTGCTGCTGCTTGCGCATGCGGT AGGTATCTATGCGTATTACGCAATGGATACGCCGCGCGGCCTCGTCGTGC CTAAACGTCAAGCGCGTGCAGGTGAGCGCTGCTGCTGACTTGATGGTGGG CTGGCATGCATGCATTGCTGTGCAAGCAGTGAACGTTTTGGACGCCTGTA ATGCTCTGATACGGTACTGGACGGACGGGGCGCAACTTGTTGAACACGCA CTTCATACTAGTTGCGCTGCCATGGCACACGCCGTGGGGCTCGACGTCAC TCAACTTCAACTGCAATGAGACTGAATGGCAGGCCGCGTTTTCCGCAGCC TCCAGTGACGACTTTCCGGGCGCCGCCGCGACACCTCCCACACCACTGCA GCACAAGACGGCACTCTCTATGTACAGCACTACAGCACCTCTGCTGAGAA GTGCGATAACATCACAACAGCGGGAAGCATGTACTCACGCCGATGCCGCA CCTGCCTTACGCAACTTTTGCGCTGCAGACCCTGTCCATACTGGAGATTG CCGCGGAGCTGCAGCGGCTGCAGGCGGAGGGCGCGGCGGGGCGCCTGACG GAGCGCGACCTCAGCGGCGGCACCTTCACGCTGTCCAACATCGGCACCAT CGGCGGCACGTACGCGTCGCCCGTGCTGCTGGTCCCGCAGGTATGGTGAT ATGCTGTATCCATAGGGTTCATACGTAGAGGTTTCTGGGCACACTTGTAT GCAGTAATACATCGAAGTATCTGTACGGAGCGCGACCTCAGCGGCAGCAC CTTCACGCTGTCCAACATTGGCAGCATCGGCGGCACGTACGCGTCGCCCG TGCTGCTCGTCCCGCAGGTAGTAGTGGTATGCCGTATAGGGTTCATACGT AGAGGTTTCTAGGCACACTTGTATGCAGTATACCCTCAAAGTATTTGATG TGAACGTAGAGGCAATGTGTGGCTAAATAGGTGTGCAAGTACGCAGGGAC GCGTGTGCGCCTGAGGCGGCAGTACAGTCGGCAACAACAGCCGCTGCGCT GTGGCGCATCTGCACCCTCAACAATGTTACCTTCTGTGACAGCCGCCTTT GCTGTGTTGTCATTTGTGATCCAACTGCCCCGATACTGTGCGTTTCTGCG TATTCATGTGCCATTGCCCAGCGGCGGTAATATCTGTGCCTCAGAGCCTG CACACGCACTGATGAATACGCAATGCGCCAGCCCTCGCGAAAACGCAATC CACAATCCGCGCACGCTCGTGGCCAGCTCGCTCTGTACCCCCCCCCCCCC CCCCCCACACACACACACACGCACCCACGCCACCGCTTCCGCCCCCTCAC CACCACCGCCGCCGCCGCTGCCAATCTCGCGCCACGCGCATTCACGCAGG TCGGCATCGGCGCCCTCGGGCGCGTGCGCACGCTGCCGCGCTACGACGCG GGCGGCGCGCTCGTGCCGGCGCCGCTCATGACGGTGTCGTGGGCCGCGGA CCACCGCGTGGTCGACGGCGCGACGCTCGCGCGCTTCTCCAACGCGTGGA AGGGCTTCCTCGAGAACCCCGCGCTCATGCTCGCCGAGTCGCGCTGA
back to top

Coding sequence (CDS) from alignment at Contig_107:314683..318029+

>mRNA_11593 ID=mRNA_11593|Name=jgi.p|Trimin1|173846|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1398bp|location=Sequence derived from alignment at Contig_107:314683..318029+ (Tribonema minus UTEX_B_3156 )
ATGAGACATCGTCCCAGTCACCCCTCTCACGCGCCCCCCGCCCCCCCCCC
CGCAGACATCGGCGAGGGCATCAAGGAGGTGGAGCTGCTGCAGTGGTTCG
TGCGCCCCGGCGACGCCGTCGCGCAGTTCGACCGCGTGTGCGAGGTGCAG
AGCGACAAGGCGACGGTCGAGATCACGTCGCGCTACGACGGCACCGTCGT
CGCGCTGCACCATGCCGTCGGCGCCATGGTGCCCACGGGCGCCACCCTCA
TGGAGATCGCAGCCCCCGCCGCTGCCGCCGCCGCTGTCGCCCCGCCGCCG
CCGGCTTCCCCATCGCTGAGCACTGCAGATACGGCCCCCGCACCGCCCCC
CGTCCTGACATCAGCGTCACCAACCAGCGGCGCCGCCCCCGCAGCAGCAG
AATTCGAGCTCGCTGTTGCCGCCACCGCCGATGCGCGCGCCGCGCAGGGC
GGCGGCGGCGGCGGCGCCGCGGTGCTGACGACGCCCGCGGTGCGCCGCGC
CGCGCGCGAGTACGGCGTCGACCTGCAGCGGCTGCGCGCCAGCGGGCCGC
GCGGGCGCGTGCTCAAGGGCGACGTCGAGGCGTACGCGCGCGCGCACAGG
CTGGAGCGCGGCGCCGCCGCCACGCTCGAACCCGCTGCTGCTTGCCCCCT
GTCCGACTTCCCGGCGCACGAACCGTCTCCGGCGCCGGCCGAGGCGCTGA
TACCGCTGCGCGGCATGCAGCGCGCCATGGCGGAGCACATGAAGCGCGCG
CTGCAGGTGCCGCACATGGGCTACTGCGACGAGGTCCTGATGGACCGCAT
GGCCGCGCTGCGCGCCGACATCCGCGCGGCGCGCGGCGCGTCCGACCCCG
CCGCCGCGCGCCTCAGCTTCCTGCCCATCATCATTAAGGCGACCTCGCTC
GCGCTCGCGCGCCACCCGATACTCAACAGCAGCATGGCGCCGTGCGGCAC
GGCGCTGCAGCCGCACGCGGACCAGAACATCGGCGTCGCGATGGACACGC
CGCGCGGCCTCGTCGTGCCCAACATCAAGCGCGTGCAGACCCTGTCCATA
CTGGAGATTGCCGCGGAGCTGCAGCGGCTGCAGGCGGAGGGCGCGGCGGG
GCGCCTGACGGAGCGCGACCTCAGCGGCGGCACCTTCACGCTGTCCAACA
TCGGCACCATCGGCGGCACGTACGCGTCGCCCGTGCTGCTGGTCCCGCAG
GTCGGCATCGGCGCCCTCGGGCGCGTGCGCACGCTGCCGCGCTACGACGC
GGGCGGCGCGCTCGTGCCGGCGCCGCTCATGACGGTGTCGTGGGCCGCGG
ACCACCGCGTGGTCGACGGCGCGACGCTCGCGCGCTTCTCCAACGCGTGG
AAGGGCTTCCTCGAGAACCCCGCGCTCATGCTCGCCGAGTCGCGCTGA
back to top