mRNA_11587 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|155307
Unique NamemRNA_11587
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: A0A835ZH59_9STRA (Alpha/Beta hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH59_9STRA)

HSP 1 Score: 405 bits (1041), Expect = 1.630e-142
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 1
Query:    1 RGGLIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESMEIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWIGARV 651
            RGGLIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESMEIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWIGARV
Sbjct:    1 RGGLIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESMEIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWIGARV 217          
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: D8LB84_ECTSI (GI23857 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB84_ECTSI)

HSP 1 Score: 149 bits (376), Expect = 1.650e-40
Identity = 96/223 (43.05%), Postives = 126/223 (56.50%), Query Frame = 1
Query:    1 RGGLIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGI-LCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESMEIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPW-ACHLAGVFSLSSFLHAASPLY---AQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTS-AGYAVTHAEYATLGHDMSRAEVEALLQWIGARV 651
            RG +IFLHGSGDTG GV++WL   +GG F+R +A  G+   +YPTAP R YT+  G +  VW DR  L   S  D   VL S+  VE  + +LE+AGV RS V +GGFSMGG +AL+ + A   A  LAGVFS +SFL   S ++   A              +Y  HG  D MV  AW RSTA+ L +  G  +T  E+  L H++   ++  LL WI   V
Sbjct:    9 RGAVIFLHGSGDTGGGVRDWLSSASGGKFDRAIAELGLGEVVYPTAPERRYTLAGGAVSTVWFDRERLSPGSRQDRAGVLRSLRQVEDEVRKLEDAGVPRSGVFVGGFSMGGCLALEALGAEGLAGRLAGVFSHASFLSDDSAVFEVTAGGSAAQSSRPAPTPVYVTHGAADGMVKVAWGRSTAEKLKARGGLDLTFKEHVELDHELEEEQIAGLLDWISTVV 231          
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: A0A803TKH0_ANOCA (Palmitoyl-protein hydrolase n=1 Tax=Anolis carolinensis TaxID=28377 RepID=A0A803TKH0_ANOCA)

HSP 1 Score: 139 bits (350), Expect = 1.880e-37
Identity = 79/211 (37.44%), Postives = 128/211 (60.66%), Query Frame = 1
Query:   10 LIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESM-EIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWI 639
            +IFLHGSGD+GPGV++W+  +     ++ L+ Q I  +YPTAP RPYT  +G L +VW DR  + ++  P+    ++SM +++  L+++  + G+ ++ ++LGGFSMGGG+A+  +A  +   +AGVF+LSSFL+  S +Y               L+  HG  DE+V ++W   T + LTS G   T      L H+M+++E+E L +WI
Sbjct:   21 VIFLHGSGDSGPGVRDWIKQV----LKKNLSFQHIKVIYPTAPARPYTPMRGSLSNVWFDRYKISYDC-PEHIETIDSMCQVLTSLIDDEVKNGIKKNRILLGGFSMGGGMAMH-LAYRYHQDVAGVFALSSFLNKNSVVYQALKKEGQEVPE---LFQCHGTADELVLYSWGEETNKMLTSLGVTTTFLSLPNLYHEMNKSELEKLQEWI 222          
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: UPI001C4DB05C (LOW QUALITY PROTEIN: lysophospholipase-like protein 1 n=1 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4DB05C)

HSP 1 Score: 137 bits (344), Expect = 1.610e-36
Identity = 79/211 (37.44%), Postives = 125/211 (59.24%), Query Frame = 1
Query:   10 LIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESM-EIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWI 639
            +IFLHGSGDTG G+++W+  +      + L+ Q I  +YPTAP RPYT  +G L  VW DR  +  N  P+    ++SM + + GL+++  + G+ ++ ++LGGFSMGGG+A+  +A  +   +AGVF+LSSFL+  S +Y               L+  HG  DE+V ++W   T + L S G A T  E+  + H+++++E+E L  WI
Sbjct:   24 IIFLHGSGDTGQGIRDWIKQV----LNQDLSFQHIKVIYPTAPARPYTPMRGSLSSVWFDRYKIS-NDCPEHIETIDSMCQALTGLIDDEVKNGIKKNRILLGGFSMGGGMAMH-LAYRYHQDVAGVFALSSFLNKNSSVYQALKKDGRELPE---LFQCHGTADELVLYSWGEETNKMLKSLGVATTFFEFPNIYHELNKSELEKLQTWI 225          
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: A0A3B4C1E0_PYGNA (Palmitoyl-protein hydrolase n=1 Tax=Pygocentrus nattereri TaxID=42514 RepID=A0A3B4C1E0_PYGNA)

HSP 1 Score: 136 bits (343), Expect = 2.590e-36
Identity = 85/211 (40.28%), Postives = 119/211 (56.40%), Query Frame = 1
Query:   10 LIFLHGSGDTGPGVQEWL-DYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESMEIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWI 639
            +IFLHGSGDTG G++ W+ D +T     + +A + I  +YPTAP RPYT  +G L HVW DR  +  +     E + E    +  ++++  +AGV +  +V+GGFSMGG +AL  +A  +   LAGVF+LSSFL+  S +Y               L   HG  DE+VSH+W   T+  L  AG A T   +  LGH + RAE+E L  WI
Sbjct:   22 VIFLHGSGDTGQGLRAWVRDVLT-----QDMAFEHIRVIYPTAPARPYTPMKGGLSHVWFDRYKISCDCPEQLESIDEMCSNLGAIVQDEVQAGVPKQRIVIGGFSMGGAMALH-LACRYHQDLAGVFALSSFLNKDSFVYQAVEDAARHPLPE--LLQCHGTADELVSHSWGEETSSLLKKAGMATTFHSFPGLGHHLCRAELELLHSWI 224          
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: A0A674K021_TERCA (Palmitoyl-protein hydrolase n=11 Tax=Durocryptodira TaxID=1579337 RepID=A0A674K021_TERCA)

HSP 1 Score: 135 bits (341), Expect = 4.890e-36
Identity = 79/214 (36.92%), Postives = 121/214 (56.54%), Query Frame = 1
Query:    1 RGGLIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESM-EIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWI 639
            R  +I LHGSGDTGPGV+ W+  +      + L  Q I  +YPTAP RPYT  +G L  VW DR  +  N  P+    ++SM +++  ++++  + G+ ++ ++LGGFSMGGG+A+  +A  +   +AGVF+LSSFL+  S +Y               L+  HG  DE+V H+W   T + L S G A +   +  L H++ + E+E L  WI
Sbjct:   19 RASVILLHGSGDTGPGVRAWIKQV----LNQDLVFQHIKVIYPTAPARPYTPMRGALSTVWFDRWKIS-NECPEHIETIDSMCQVLTNVIDDEVKNGISKNRIILGGFSMGGGMAMH-LAYRYHQDVAGVFALSSFLNKTSAVYQALQKNESVLPE---LFQCHGTADELVLHSWGEETNKMLKSLGVATSFHSFPNLKHELHKTELEKLSSWI 223          
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: A0A6I8P4D0_ORNAN (Palmitoyl-protein hydrolase n=3 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=A0A6I8P4D0_ORNAN)

HSP 1 Score: 137 bits (345), Expect = 1.380e-35
Identity = 82/213 (38.50%), Postives = 120/213 (56.34%), Query Frame = 1
Query:    1 RGGLIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESMEIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWI 639
            R  LI LHGSGD+G G+++W+      +  R LA + +  +YPTAPLRPYT   GEL  VW DR  +  +S    E +    +I+  L+++  ++G+ ++ +++GGFSMGG +ALQ +A      LAGVF+LSSFL+  S +Y               L+  HG  DE+V H+W R T   L S G   T   +  L H+++R E+E L  WI
Sbjct:  120 RASLIVLHGSGDSGQGMKDWIRR----TLNRDLAFRHVKIIYPTAPLRPYTPRMGELSPVWFDRYKISIDSPEHLESINSMCQILTDLIDDEVKSGIKKNRILIGGFSMGGCMALQ-LAYRKHQDLAGVFALSSFLNKTSAVYQALQKKEASLPE---LFQCHGTADELVPHSWGRETNSRLRSLGVTTTFHSFPRLNHELNRDELEQLKSWI 324          
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: UPI0015923F26 (lysophospholipase-like protein 1 n=3 Tax=Lacertinae TaxID=162266 RepID=UPI0015923F26)

HSP 1 Score: 134 bits (337), Expect = 1.700e-35
Identity = 76/211 (36.02%), Postives = 123/211 (58.29%), Query Frame = 1
Query:   10 LIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESM-EIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWI 639
            ++FLHGSGDTG G+++W+ ++        L+ Q I  +YPTAP RPYT  +G L +VWHDR  +  N  P+    ++SM + +  L+++  ++G+ ++ ++LGGFSMGGG+A+  +A  +   +AG F+LSSFL   S +Y               L+  HG  DE+V ++W   T + L S G A T      L H+++++E++ L  WI
Sbjct:   22 VVFLHGSGDTGQGLRDWIKWV----LSHDLSFQHIKVIYPTAPARPYTPMRGSLSNVWHDRYKIS-NDCPEHIETIDSMCQALTSLIDDEVKSGIGKNRILLGGFSMGGGMAMH-LAYRYHQDVAGAFALSSFLSKTSAVYQALKKIEREPPE---LFQCHGTADELVLYSWGEETNKVLKSLGIATTFLSLPNLYHELNKSELDKLQAWI 223          
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: A0A8D0KJ62_9SAUR (Palmitoyl-protein hydrolase n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0KJ62_9SAUR)

HSP 1 Score: 134 bits (336), Expect = 2.330e-35
Identity = 78/211 (36.97%), Postives = 124/211 (58.77%), Query Frame = 1
Query:   10 LIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESM-EIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXXLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHDMSRAEVEALLQWI 639
            +IFLHGSGDTG G++ W+  +      + L+ Q I  +YPTAP RPYT  +G L +VW DR  +  N  P+    ++SM + + GL+++  + G+ ++ ++LGGFSMGGG+A+  +A  +   +AGVF+LSSFL+  S +Y               L+  HG  DE+V ++W   T++ L S G   T   +  L H+++++E+E L  WI
Sbjct:   21 VIFLHGSGDTGQGIRTWIKQV----LNQDLSFQHIRLIYPTAPARPYTPMRGSLSNVWFDRYKIS-NDCPEHTETIDSMCQALTGLIDDEVKNGIKKNRILLGGFSMGGGMAMH-LAYRFHQDVAGVFALSSFLNKNSGVYKALKKSEGEIPE---LFQCHGTADELVLYSWGDETSKMLKSLGVTTTFLSFPNLYHELNKSELEKLHTWI 222          
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Match: A0A6H5K9N1_9PHAE (Abhydrolase_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N1_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 3.380e-35
Identity = 89/215 (41.40%), Postives = 117/215 (54.42%), Query Frame = 1
Query:    1 RGGLIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGI-LCLYPTAPLRPYTMCQGELRHVWHDRLALDFNSIPDEEHVLESMEIVEGLLEELEEAGVDRSAVVLGGFSMGGGVALQCIAAPW-ACHLAGVFSLSSFLHAASPLYAQXXXXXXXXXXXXX--LYTAHGLRDEMVSHAWARSTAQGLTS-AGYAVTHAEYATLGHDMSRAEVEALL 630
            RG +IFLHGSGDTG GV++WL   +GG F R +A  G+   +YPTAP R YT+  G    VW DR  L   S  D   VL S+  VE  + +LE+AGV  S V +GGFSMGG +AL+ + A   A  LAGVFS +SFL   S ++                 +Y  HG  D MV  AW R+TA+ L +  G  +T  E+  L H++   +    L
Sbjct:    9 RGAVIFLHGSGDTGRGVRDWLSSASGGKFNRAIAELGLGEVVYPTAPERRYTLAGGAPSTVWFDRERLSPGSPQDRAGVLRSLRQVEDEVRKLEDAGVPSSGVFVGGFSMGGCLALETLGAEGLAGRLAGVFSHASFLSDDSAVFEMTAGSAAQSSRQTPTPVYVTHGAADGMVKVAWGRATAEKLKAKTGLDLTFKEHVELDHELGEEQARKFL 223          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|155307 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZH59_9STRA1.630e-142100.00Alpha/Beta hydrolase protein (Fragment) n=1 Tax=Tr... [more]
D8LB84_ECTSI1.650e-4043.05GI23857 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A803TKH0_ANOCA1.880e-3737.44Palmitoyl-protein hydrolase n=1 Tax=Anolis carolin... [more]
UPI001C4DB05C1.610e-3637.44LOW QUALITY PROTEIN: lysophospholipase-like protei... [more]
A0A3B4C1E0_PYGNA2.590e-3640.28Palmitoyl-protein hydrolase n=1 Tax=Pygocentrus na... [more]
A0A674K021_TERCA4.890e-3636.92Palmitoyl-protein hydrolase n=11 Tax=Durocryptodir... [more]
A0A6I8P4D0_ORNAN1.380e-3538.50Palmitoyl-protein hydrolase n=3 Tax=Ornithorhynchu... [more]
UPI0015923F261.700e-3536.02lysophospholipase-like protein 1 n=3 Tax=Lacertina... [more]
A0A8D0KJ62_9SAUR2.330e-3536.97Palmitoyl-protein hydrolase n=1 Tax=Salvator meria... [more]
A0A6H5K9N1_9PHAE3.380e-3541.40Abhydrolase_2 domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:281377..282369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|155307|gw1.107.103.1
BRITEko00000
KEGG koko:K06999
GOsGO:0002084,GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008474,GO:0009056,GO:0009057,GO:0009987,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019538,GO:0030163,GO:0032879,GO:0032880,GO:0035601,GO:0036211,GO:0042157,GO:0042159,GO:0042996,GO:0042997,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051049,GO:0051051,GO:0051223,GO:0051224,GO:0052689,GO:0060341,GO:0060627,GO:0065007,GO:0070201,GO:0071704,GO:0090087,GO:0098599,GO:0098732,GO:0098734,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1904950,GO:1905475,GO:1905476
Preferred nameLYPLAL1
Descriptionacyl-protein thioesterase
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0400@1|root,KOG2112@2759|Eukaryota
Evalue2.71e-41
Seed ortholog2880.D8LB84
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPhospholipase/carboxylesterase/thioesterase
Ec32 orthologEc-27_004830.1
TranscriptId155629
TrackFilteredModels1
ProteinId155307
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155307gene_11587Tribonema minus UTEX_B_3156 geneContig_107 281377..282369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|155307Trimin1|155307|gw1.107.103.1Tribonema minus UTEX_B_3156 polypeptideContig_107 281377..282369 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11587_2exon_11587_2Tribonema minus UTEX_B_3156 exonContig_107 281377..281721 -
exon_11587_1exon_11587_1Tribonema minus UTEX_B_3156 exonContig_107 282064..282369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11587CDS_11587Tribonema minus UTEX_B_3156 CDSContig_107 282064..282369 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11587 ID=mRNA_11587|Name=jgi.p|Trimin1|155307|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=651bp|location=Sequence derived from alignment at Contig_107:281377..282369- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGAGGTGGACTGATCTTCCTACATGGCAGTGGCGACACGGGACCTGGAGT
CCAGGAGTGGCTGGACTACATCACCGGAGGGAGCTTTGAGCGCACTCTGG
CAGGACAGGGTATCCTCTGCCTGTATCCCACAGCCCCGTTGCGACCCTAC
ACCATGTGCCAAGGCGAATTGAGACACGTCTGGCACGATAGACTAGCGCT
GGATTTCAATAGCATCCCTGACGAGGAGCATGTGCTTGAGTCCATGGAGA
TCGTGGAGGGCTTGCTGGAGGAGCTGGAGGAGGCGGGAGTCGATAGGTCC
GCTGTGGTGCTGGGCGGCTTCAGCATGGGCGGCGGAGTCGCACTGCAGTG
CATCGCAGCGCCGTGGGCGTGCCACCTGGCGGGCGTCTTCTCGCTGAGCA
GCTTCCTGCACGCCGCGTCGCCGCTCTACGCGCAGCAGCAGCAGCAGCAG
CAGGCGCCGCCGCCGCCGCCGCCGCTGTACACGGCGCACGGCCTGCGCGA
CGAGATGGTGTCGCACGCGTGGGCGCGCAGCACGGCGCAGGGGCTGACCT
CCGCGGGCTACGCCGTGACGCACGCAGAGTACGCCACGCTGGGCCACGAC
ATGTCGCGCGCGGAGGTGGAGGCGCTGCTGCAGTGGATCGGCGCGCGCGT
C
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protein sequence of jgi.p|Trimin1|155307

>Trimin1|155307|gw1.107.103.1 ID=Trimin1|155307|gw1.107.103.1|Name=jgi.p|Trimin1|155307|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=217bp
RGGLIFLHGSGDTGPGVQEWLDYITGGSFERTLAGQGILCLYPTAPLRPY
TMCQGELRHVWHDRLALDFNSIPDEEHVLESMEIVEGLLEELEEAGVDRS
AVVLGGFSMGGGVALQCIAAPWACHLAGVFSLSSFLHAASPLYAQQQQQQ
QAPPPPPPLYTAHGLRDEMVSHAWARSTAQGLTSAGYAVTHAEYATLGHD
MSRAEVEALLQWIGARV
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mRNA from alignment at Contig_107:281377..282369-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11587 ID=mRNA_11587|Name=jgi.p|Trimin1|155307|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=993bp|location=Sequence derived from alignment at Contig_107:281377..282369- (Tribonema minus UTEX_B_3156 )
AGAGGTGGACTGATCTTCCTACATGGCAGTGGCGACACGGGACCTGGAGT CCAGGAGTGGCTGGACTACATCACCGGAGGGAGCTTTGAGCGCACTCTGG CAGGACAGGGTATCCTCTGCCTGTATCCCACAGCCCCGTTGCGACCCTAC ACCATGTGCCAAGGCGAATTGAGACACGTCTGGCACGATAGACTAGCGCT GGATTTCAATAGCATCCCTGACGAGGAGCATGTGCTTGAGTCCATGGAGA TCGTGGAGGGCTTGCTGGAGGAGCTGGAGGAGGCGGGAGTCGATAGGTCC GCTGTGGTGAGCAGGGCAGAGCTACAGTGACCACATTGCTCACGCAGAAT TGCAGCAGTAGGCAGAGACAGAGAGCACAGGCTCTTGCCGCTATGTTGAA GTGTGAGAGACCTACATTGTGATTCTTGCTGAGTGGATATGACGGATGCC AAGCTTGCTCCCAGAGCATTCATATATATTCATTCAACAACGCTTCTCAA AGCTCATCGACAATCACACTCAATGACATCAAGAGATGTACTTGTATGAA AAAAATTTTAATCATGGACGACGCAAACCCGCAACAACGCTGCACCTGCC GCTGATGCTGTCCGCTGCCCCCGCGCGCCGCCGCCGCTGCCCGCGCAGGT GCTGGGCGGCTTCAGCATGGGCGGCGGAGTCGCACTGCAGTGCATCGCAG CGCCGTGGGCGTGCCACCTGGCGGGCGTCTTCTCGCTGAGCAGCTTCCTG CACGCCGCGTCGCCGCTCTACGCGCAGCAGCAGCAGCAGCAGCAGGCGCC GCCGCCGCCGCCGCCGCTGTACACGGCGCACGGCCTGCGCGACGAGATGG TGTCGCACGCGTGGGCGCGCAGCACGGCGCAGGGGCTGACCTCCGCGGGC TACGCCGTGACGCACGCAGAGTACGCCACGCTGGGCCACGACATGTCGCG CGCGGAGGTGGAGGCGCTGCTGCAGTGGATCGGCGCGCGCGTC
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Coding sequence (CDS) from alignment at Contig_107:281377..282369-

>mRNA_11587 ID=mRNA_11587|Name=jgi.p|Trimin1|155307|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=651bp|location=Sequence derived from alignment at Contig_107:281377..282369- (Tribonema minus UTEX_B_3156 )
AGAGGTGGACTGATCTTCCTACATGGCAGTGGCGACACGGGACCTGGAGT
CCAGGAGTGGCTGGACTACATCACCGGAGGGAGCTTTGAGCGCACTCTGG
CAGGACAGGGTATCCTCTGCCTGTATCCCACAGCCCCGTTGCGACCCTAC
ACCATGTGCCAAGGCGAATTGAGACACGTCTGGCACGATAGACTAGCGCT
GGATTTCAATAGCATCCCTGACGAGGAGCATGTGCTTGAGTCCATGGAGA
TCGTGGAGGGCTTGCTGGAGGAGCTGGAGGAGGCGGGAGTCGATAGGTCC
GCTGTGGTGCTGGGCGGCTTCAGCATGGGCGGCGGAGTCGCACTGCAGTG
CATCGCAGCGCCGTGGGCGTGCCACCTGGCGGGCGTCTTCTCGCTGAGCA
GCTTCCTGCACGCCGCGTCGCCGCTCTACGCGCAGCAGCAGCAGCAGCAG
CAGGCGCCGCCGCCGCCGCCGCCGCTGTACACGGCGCACGGCCTGCGCGA
CGAGATGGTGTCGCACGCGTGGGCGCGCAGCACGGCGCAGGGGCTGACCT
CCGCGGGCTACGCCGTGACGCACGCAGAGTACGCCACGCTGGGCCACGAC
ATGTCGCGCGCGGAGGTGGAGGCGCTGCTGCAGTGGATCGGCGCGCGCGT
C
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