mRNA_11583 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352055
Unique NamemRNA_11583
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A0A836CMK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK3_9STRA)

HSP 1 Score: 558 bits (1439), Expect = 2.690e-199
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 3
Query:   99 MRQRALVALLVAGSACAFHTCSPASASVRHKNSVRRRVSEEVESFDVDFDIDRLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGGAQLAPPDTAVLERIRVFLKLPEEGSTTAAAVAATLAEVREGCPGVEVMGLWGEGRGAYALLQEVKAAVNAPKLKVTLPYRGVEESFKWNQGLGEGRGSIIWTFEFE 974
            MRQRALVALLVAGSACAFHTCSPASASVRHKNSVRRRVSEEVESFDVDFDIDRLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGGAQLAPPDTAVLERIRVFLKLPEEGSTTAAAVAATLAEVREGCPGVEVMGLWGEGRGAYALLQEVKAAVNAPKLKVTLPYRGVEESFKWNQGLGEGRGSIIWTFEFE
Sbjct:    1 MRQRALVALLVAGSACAFHTCSPASASVRHKNSVRRRVSEEVESFDVDFDIDRLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGGAQLAPPDTAVLERIRVFLKLPEEGSTTAAAVAATLAEVREGCPGVEVMGLWGEGRGAYALLQEVKAAVNAPKLKVTLPYRGVEESFKWNQGLGEGRGSIIWTFEFE 292          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: D7FMZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ7_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 1.190e-52
Identity = 106/264 (40.15%), Postives = 168/264 (63.64%), Query Frame = 3
Query:  213 SEEVESFDVDFDID--RLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGG----AQLAPPDTAVLERIRVFLKLPEEGSTTAAAVAATLAEVREGCPGVEVMGLWG---EGRGAYALLQEVKAAVNAPKLKVTLPYRGVEESFKWNQGL-GEGRGSIIWTFEFE 974
            +EEVE F++D ++D  +L+   T IT+VK +G VPASS++VYDC+HG+WLL Q+AYDRKI+LF+SRS   +  +++ +PD+++ +F+GA +PK  KR+LK++ L +VV  DA +  A+ +++  ER RLAAKGLS++S++RERYL   GG    A    P  +++  +R F+++ E  S     VA  +  + + C  + V+GLWG   +      +L+ V+       L+V + + G  +S  W  GL G  RG I+WTF +E
Sbjct:    3 TEEVEDFEIDMEVDTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLLSISSSLPDNSRFIFSGALIPKQIKRILKMKGLSAVVARDAESVVAMEESIDAERKRLAAKGLSRISQSRERYLLEKGGGENGANQRGPVGSLVSGLRTFVRIQEGQSVDD--VAEIVNTIEQTCRNISVVGLWGGDMDPETCLNMLEAVRTKSGISNLRVAMEHLG-PKSAGWFTGLRGARRGPIMWTFNYE 263          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A0A6V1VHY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VHY5_HETAK)

HSP 1 Score: 77.8 bits (190), Expect = 2.480e-12
Identity = 60/169 (35.50%), Postives = 87/169 (51.48%), Query Frame = 3
Query:  225 ESFDVDFDIDRLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPD--DAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGGAQLAPPDTAVLERIRVFLKLPEE 725
            ++F++D D D ++  N  IT +K+   +P ++ I  +CT  +W+  Q+A DR I  F SRSA  +   A   PD  DA +L TG  L K  KRL K   ++ + V +   A  LS  +A E AR   K  SKVS +R++YL A  G   A      LE     L++  E
Sbjct:   80 DTFEMDIDGDAINLFNERITTLKKA--LP-TARICLECTGLEWIFAQIAQDRGIDAFYSRSATALRKYAETAPDVADATLLLTGKVLEKQVKRLAKFPEVNCIAVSNKEEADILSQGLAAEIARAMKKRRSKVSASRDKYLDAKTGDSRAK---GYLESANYILRISSE 242          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A0A835YJT4_9STRA (Lactonase, 7-bladed beta-propeller-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT4_9STRA)

HSP 1 Score: 1187 bits (3071), Expect = 0.000e+0
Identity = 615/615 (100.00%), Postives = 615/615 (100.00%), Query Frame = 3
Query:   87 MIDGDSAPTPGKLEQLRAQVSRTYQHWLDRSVIYHTGRWVGFGVLLGVYLLRVYIIQGWFIVTYGLGIFLLNNFIGFLSPQVDPEMDGPGLPTASTDEFRPFTRRLPEFQFWHSSTRDAAXXXXXXXXXXXXXXXXXXXSFRXXXXXXXXXXXXXXXXRGVLTALVMTHFSLFDVPVFWPILLVYFVVLFFLTMKRQIKHMIKHRYVPWNWGKAKYRGGDGGTPGFDNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMKPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPHTTGRRQPGLP 1931
            MIDGDSAPTPGKLEQLRAQVSRTYQHWLDRSVIYHTGRWVGFGVLLGVYLLRVYIIQGWFIVTYGLGIFLLNNFIGFLSPQVDPEMDGPGLPTASTDEFRPFTRRLPEFQFWHSSTRDAAXXXXXXXXXXXXXXXXXXXSFRXXXXXXXXXXXXXXXXRGVLTALVMTHFSLFDVPVFWPILLVYFVVLFFLTMKRQIKHMIKHRYVPWNWGKAKYRGGDGGTPGFDNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMKPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPHTTGRRQPGLP
Sbjct:    1 MIDGDSAPTPGKLEQLRAQVSRTYQHWLDRSVIYHTGRWVGFGVLLGVYLLRVYIIQGWFIVTYGLGIFLLNNFIGFLSPQVDPEMDGPGLPTASTDEFRPFTRRLPEFQFWHSSTRDAAXXXXXXXXXXXXXXXXXXXSFRXXXXXXXXXXXXXXXXRGVLTALVMTHFSLFDVPVFWPILLVYFVVLFFLTMKRQIKHMIKHRYVPWNWGKAKYRGGDGGTPGFDNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMKPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPHTTGRRQPGLP 615          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A0A835YI21_9STRA (Lactonase, 7-bladed beta-propeller-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YI21_9STRA)

HSP 1 Score: 715 bits (1845), Expect = 1.270e-254
Identity = 343/390 (87.95%), Postives = 363/390 (93.08%), Query Frame = 3
Query:  762 FDNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMKPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPHTTGRRQPGLP 1931
            FDNLAHAP+GTPA  S+ VYR HRATGTMTLLTV+NTLENPAFFRYHP +NVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLT+D PA HMLFCNYWDSVIGTMPM P GMLE+VSVKLEPPKRVVAR ISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLG+D+IKQHLYDE TGTLTPTCTI CGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNA IAETLEAGSSKSTLRLVQ+ISTIPSAFP  LNTCGRICIDPSGR+VLVSNRGHDSIAVFAI+SDTDACGEGGKLSVVS+THTRG+TPRHFQFDP+G  LL+ANQDTD+ITLF+FD  TG LGF+G VYDCPSPNFVC+ E H   RRQ G+P
Sbjct:   25 FDNLAHAPRGTPASHSIRVYRFHRATGTMTLLTVNNTLENPAFFRYHPLRNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTVDVPAKHMLFCNYWDSVIGTMPMTPAGMLEEVSVKLEPPKRVVARDISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGEDNIKQHLYDEATGTLTPTCTIACGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNATIAETLEAGSSKSTLRLVQSISTIPSAFPGTLNTCGRICIDPSGRYVLVSNRGHDSIAVFAINSDTDACGEGGKLSVVSFTHTRGRTPRHFQFDPTGTTLLAANQDTDTITLFSFDAATGVLGFSGHVYDCPSPNFVCVAESHVDIRRQEGVP 414          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A0A0G4I6E3_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4I6E3_9ALVE)

HSP 1 Score: 532 bits (1370), Expect = 1.120e-180
Identity = 255/385 (66.23%), Postives = 301/385 (78.18%), Query Frame = 3
Query:  762 FDNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMKPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPHTTGRR 1916
            FDNLAH P+G PA  +L+VYRLHR + T+TLLT  + + NPAF R+HP KN+LY CTEDITKDN + AF+VSP +GEL  + S SA GKSTCYLTI A   HMLF NYWDSVIGT+P+ P G+L  V  K  P   VVAR I+DHL NRQSEPHAHAIVLDP+  RVA+VPDLG+DDIKQ++YDE TG L  TCTI CGP+    HGPRY+ FHPT+NTVYV+NELSSTVSVFEF+   A++L  GS+  TLR +QNISTIP+A+PRK NTCGRI +DP G HV VSNRGHDSIAVF I  D+ +CGEGGKLS+VSY HTRG+TPRHFQFDP G ++L ANQDT+SITLF FD ++  L FTG+ Y+ PSPNFVC+ E   TG R
Sbjct:   25 FDNLAHQPRGYPATDTLWVYRLHRKSATLTLLTKTSAISNPAFIRFHPQKNILYTCTEDITKDNEIVAFSVSPTTGELVKLGSVSAEGKSTCYLTIAADQRHMLFVNYWDSVIGTIPVSPTGLLGPVKHKRAPATPVVARDIADHLNNRQSEPHAHAIVLDPYVNRVAYVPDLGEDDIKQYVYDEATGQLRYTCTISCGPKEGKPHGPRYLEFHPTMNTVYVVNELSSTVSVFEFDMAAADSLTEGSNVQTLRFIQNISTIPTAYPRKSNTCGRIAVDPKGLHVFVSNRGHDSIAVFRIDDDSSSCGEGGKLSIVSYCHTRGRTPRHFQFDPLGEFVLCANQDTNSITLFKFDQESSELSFTGESYNVPSPNFVCV-ETMKTGVR 408          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: D8LM58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM58_ECTSI)

HSP 1 Score: 414 bits (1065), Expect = 1.560e-137
Identity = 211/384 (54.95%), Postives = 249/384 (64.84%), Query Frame = 3
Query:  762 FDNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMKPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPHTTGR 1913
            FDNLAH P+GT A  +L  +RLHR + TMTLL V++TLENPAF R+HP  N+LYACTEDITKDN VA F+VS   G+LTH+ S+SA GKSTCYL +D+  +HMLF NYWDSV+GTMP+   G+LE V   L+P + VVAR + DHLANRQSEPHAHAIVLDP+FG+VAF+PDLG D I+QH YD KTG LTP+ T+ CGP+ +  HGPRYI                                                                        VLVSNRGH+SIAVFAI   T  CGE G L VV+Y HT+GKTPRHFQFDPSG +LLSANQDTDS+T+F FD +TG L FTGDV D PSPNFVC+ +PH  GR
Sbjct:   28 FDNLAHVPRGTTAGHTLSCFRLHRESATMTLLAVEDTLENPAFLRFHPEYNILYACTEDITKDNEVACFSVSATCGKLTHLRSQSAKGKSTCYLELDSSLEHMLFVNYWDSVVGTMPLTCSGLLEPVVKTLKPERPVVARDLKDHLANRQSEPHAHAIVLDPYFGKVAFIPDLGMDVIQQHHYDAKTGVLTPSTTLACGPDDLKPHGPRYI-----------------------------------------------------------------------FVLVSNRGHNSIAVFAI-KQTTRCGEAGYLRVVNYCHTKGKTPRHFQFDPSGEFLLSANQDTDSVTVFRFDNETGKLTFTGDVNDVPSPNFVCVFQPHRNGR 339          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: F2U7G7_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U7G7_SALR5)

HSP 1 Score: 410 bits (1055), Expect = 2.710e-135
Identity = 207/380 (54.47%), Postives = 252/380 (66.32%), Query Frame = 3
Query:  762 FDNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMKPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPH 1901
            F+NLAH P GT +  SLYVYRL   TG + LLTV +  ENPAF RYHP  NVLY CTE I  D  + A  V+  +G L+ +   SA GKSTCYLTID    HML  NYWDS +  +PM+  G L  VS KL P ++VVA   SDHL NRQ EPH HAIVLDP+ G VA+VPDLG D IKQ ++D+ TG+L        G + +  HGPRY+ FHP L   YV+NELSSTV+VF FN   A  +     K TL L+Q ISTIPSAFPR LNTCGRI +  +G  V+VSNRGH+SI+ + ++ D       G L    Y HTRG+TPRHFQFD +G +LL ANQDTDS+++F+FD   G L F G  YD PSPNFVC++ P+
Sbjct:   19 FENLAHTPDGTVSAHSLYVYRLDTQTGQLVLLTVLDGFENPAFLRYHPQLNVLYFCTESIADDGDIVACKVNARTGALSVLGKWSAHGKSTCYLTIDTDLKHMLAVNYWDSTLSVLPMETSGALSPVSFKLVPDRKVVASSRSDHLTNRQLEPHNHAIVLDPYNGTVAYVPDLGTDVIKQFVFDKGTGSLIHAGQFQSGSDELKPHGPRYLQFHPKLPVAYVVNELSSTVAVFSFNIEQAARIAEEPEKPTLTLLQTISTIPSAFPRHLNTCGRITVTNAGTFVVVSNRGHNSISTYRVNDD-------GTLCSADYFHTRGRTPRHFQFDSTGNWLLVANQDTDSVSVFSFDRKHGTLNFAGHTYDVPSPNFVCVQMPY 391          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A9VB49_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VB49_MONBE)

HSP 1 Score: 402 bits (1033), Expect = 7.720e-132
Identity = 208/383 (54.31%), Postives = 243/383 (63.45%), Query Frame = 3
Query:  762 FDNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPM-KPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKST--LRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPH 1901
            FDNLAH PKGTPAK SLYVYRL   TG +TLLTVDN+ +NP F RYHP KN+LY CTEDI K+N + A++V+P +G L  +   SA G+STCYLTID P  HML  NYWDS +   P+    G L D S   EP K+VVA    DHL NRQ EPHAHAIVLDP+ G +AFVPDLG D IK   YD  TG L    T   GP G   HGPRY+ FHP LN +YV+NELSSTVSVF+++   A  L A  S     L   Q+I T+P AFPR LNTCGRIC+DPSG++V+VSNRGH+SIA F   + T      G L    + HTRG+TPRHFQF                        + G L FTG  YD PSPNFVC+  PH
Sbjct:   30 FDNLAHVPKGTPAKHSLYVYRLCPRTGQLTLLTVDNSFDNPGFLRYHPQKNILYLCTEDILKENTIGAYSVNPETGALAEIDHWSAHGRSTCYLTIDKPQRHMLAVNYWDSTVAAFPIDSSTGKLRDASHIHEPEKKVVAMSRLDHLHNRQLEPHAHAIVLDPYEGHLAFVPDLGLDVIKIFTYDNATGCLKTAQTAAPGPAG-STHGPRYVHFHPELNIMYVVNELSSTVSVFDYDREAAAQLAANPSADVTILTFKQSIPTVPEAFPRSLNTCGRICLDPSGQYVVVSNRGHNSIATFKADAST------GMLKQPEFFHTRGRTPRHFQFXXXXXXXXXXXXXXXXXXXXXXXREEGVLEFTGHTYDVPSPNFVCVHAPH 405          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A0A6B2L6A8_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L6A8_9EUKA)

HSP 1 Score: 364 bits (934), Expect = 1.290e-117
Identity = 180/360 (50.00%), Postives = 233/360 (64.72%), Query Frame = 3
Query:  840 GTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMKPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAG--SSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPHTTGR 1913
            G +TLL++   ++NPAF R+HP +N+LY C+E I  D+ V +F+VSP +G L  +      GKS CYLTID    H+L+ NYWDS IG+ P++PCGML  V+    P K VV+   +DHL NRQSEPHAHA+VLDP  GR+A++PDLG+D +KQ LY+ + G L P  TIP      G  GPRYI FHP L   +++NELSS++SVFEF    A  +     S++ TL  +Q+ISTIP A+P+KLNTCGRI +DP+G+ VLVSNRGH+SIA+F I +D+       KLS V Y HTRGKTPRHFQFD                         G+L +TG+ YD PSPNFVC+  PH   R
Sbjct:    5 GALTLLSISREMDNPAFMRFHPFQNILYVCSESILTDDKVVSFSVSPTTGLLRKLNEHGTGGKSCCYLTIDKKMKHLLYVNYWDSTIGSFPIQPCGMLNGVNHIYRPEKSVVSSHRTDHLNNRQSEPHAHAVVLDPCLGRIAYIPDLGEDVVKQFLYNPENGELLPYGTIPADSLAPGPSGPRYIEFHPFLPVAFLVNELSSSISVFEFEEAEASLISECNVSARPTLVQIQSISTIPFAYPKKLNTCGRITVDPTGQFVLVSNRGHNSIAIFRISTDSR------KLSEVGYFHTRGKTPRHFQFDXXXXXXXXXXXXXXXXXXXXXXXXXGSLNYTGNTYDVPSPNFVCVCAPHMLAR 358          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A0A7S4RRV9_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4RRV9_9DINO)

HSP 1 Score: 366 bits (939), Expect = 4.390e-117
Identity = 194/412 (47.09%), Postives = 263/412 (63.83%), Query Frame = 3
Query:  762 FDNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNT-LENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMKPCGMLEDVS-------------VKLEPPKRVVARGISDHLAN--RQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETL------EAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPHTTGRRQPGLP 1931
            FDNLAH PKGT A +SLY +R+  + G M L++V N  + NPAF R+HP KNVLY CTE + ++  + ++ V P +G LT + S +A G STCY+T+D   ++ML  NYW++ IG   +   G ++D +             +K    K V    ++D  A   RQS+PH+HA++L+PF+GR+A+VPDLG D I+Q  YD++ G L     +P GP+G  A GPRYI FHP L   YV+NELSS VSVFEF+   A+ L      +A +++ TLRL+Q + TIP A+P +LNTCGRI +  +G  VLVSNRGH+SI VF +H D +     G LSV    HTRG TPRHFQFD SG++L++ANQD+D+I +F F+  TG L +TG  Y  PSPNFVC   PH      P +P
Sbjct:   43 FDNLAHGPKGTEATRSLYTFRMDPSDGQMALISVTNDPVMNPAFSRFHPFKNVLYTCTESVAENGEIVSWEVCPRTGRLTKLSSSNAGGTSTCYITLDMECENMLVVNYWNATIGVFGLS--GEMDDTATLRSMYDPNDGREMKARHDKHV-NHSMNDASAQKERQSDPHSHAVILEPFYGRIAYVPDLGMDVIRQFHYDKEKGRLISGGAMPSGPDGRVALGPRYIEFHPALPVCYVVNELSSEVSVFEFDFKCAKELMSAGEKDAANAEPTLRLMQTVRTIPDAYPGQLNTCGRIAVHSAGNFVLVSNRGHNSITVFRVHHDLET---PGMLSVAQIQHTRGATPRHFQFDGSGQWLITANQDSDNIGVFRFNLATGKLEWTGHEYLVPSPNFVCSVRPHLAVSAGPPVP 448          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A0A7S3U6W3_9SPIT (Hypothetical protein n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3U6W3_9SPIT)

HSP 1 Score: 357 bits (916), Expect = 7.970e-114
Identity = 200/404 (49.50%), Postives = 252/404 (62.38%), Query Frame = 3
Query:  762 FDNLAHAPKGTPAKQ-SLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSG-ELTHMVSRSAMGKSTCYLTIDAPADH--MLFCNYWDSVIGTMPMKPCGMLEDVSVKLEPPKRVVARGISDHLANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETL----EAGSSKST--LRLVQNISTI----PSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREPHTTGRRQPGLP 1931
            F  LAHAPKG+ AK  +L+ YR+   TG +      + L NPAF R+HP+K ++Y  TE IT+   +   A  P +G  L     +SA G STCYLT+ +P D   ML  NYWDSVI  +P KPCG LE V+  L PP  V ARGI DHL +RQSEPHAHA+VLDP FGR+AFVPDLG D ++ +L D  +G+L+   TIPC P G G HGPRYI F P+    YV+NELSSTVSVF F    A  L     +G SK+   L+LVQ +ST+    P   PRK NTCGRI + P+G+ VLVSNRG DSIA FAI  +        +L   + T T G TPRHFQF  +G ++++ANQD+DS+ +F F P+TG L  TG +Y+  SPNFV            PG+P
Sbjct:   28 FSTLAHAPKGSEAKHGTLHAYRMCTQTGELIHEASLDGLHNPAFLRHHPSKPLIYVATETITEPGDIITLAYDPTAGPSLRQTGVQSAHGASTCYLTLTSPTDKQWMLAVNYWDSVISVLPTKPCGTLEPVACVLPPPMPVRARGIEDHLRDRQSEPHAHAVVLDPSFGRIAFVPDLGTDMVRLYLLDPASGSLSHAGTIPCAPTGTGPHGPRYIEFDPSRTAAYVVNELSSTVSVFRFCQASAGALIHADASGRSKAAEVLQLVQVVSTLEPVQPGLAPRK-NTCGRIAVAPNGKFVLVSNRGDDSIACFAIEREAGTT-LPPRLRTPTLTKTGGATPRHFQFAGNGSFVIAANQDSDSLAVFKFCPETGQLHSTGKLYEVASPNFVATFSSREGVGPLPGIP 429          
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Match: A0A7S3YTS1_9EUKA (Hypothetical protein n=4 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YTS1_9EUKA)

HSP 1 Score: 358 bits (918), Expect = 9.130e-114
Identity = 188/395 (47.59%), Postives = 240/395 (60.76%), Query Frame = 3
Query:  765 DNLAHAPKGTPAKQSLYVYRLHRATGTMTLLTVDNTLENPAFFRYHPTKNVLYACTEDITKDNLVAAFAVSPVSGELTHMVSRSAMGKSTCYLTIDAPADHMLFCNYWDSVIGTMPMK---PCGMLEDVSVKLEPPKRVVAR------------GISDH--LANRQSEPHAHAIVLDPFFGRVAFVPDLGDDDIKQHLYDEKTGTLTPTCTIPCGPEGVGAHGPRYICFHPTLNTVYVINELSSTVSVFEFNANIAETLEAGSSKSTLRLVQNISTIPSAFPRKLNTCGRICIDPSGRHVLVSNRGHDSIAVFAIHSDTDACGEGGKLSVVSYTHTRGKTPRHFQFDPSGRYLLSANQDTDSITLFNFDPDTGALGFTGDVYDCPSPNFVCIREP 1898
            D LAH P G  A    YVY+++  TG +TL +VD  +ENPAF RYHPTKN+LY  TE I ++ +VAA+ V P SG LT    + A G STCYLTID   ++MLF NYWDS +GT P+    P   ++ +  K +    V  R             ++D    A RQ+  HAH+IVLDP  G VAFVPDLG D + Q+L+D KTG L     IP      G HGPRYI FH  LN  Y+INE+S TV+VF+F+ +  E +EAG S  +L  +Q+IST+P  FP   NTCGRIC+DP+GR VLVSNRGHDSI VF I ++ D     G+L+ V + HTRG+TPRHF FD S                F+F+P  G L  TG+ Y  PSPNF+C++ P
Sbjct:   69 DILAHQPAGDNALFGFYVYKMNTTTGGLTLTSVDKGMENPAFSRYHPTKNILYTATESIHENGIVAAYDVDPESGVLTERAQQDAGGASTCYLTIDRDEENMLFVNYWDSTLGTFPLNDGTPVDNVKLIETKFDAADAVTKRHPAPKAGEQRKHSLNDPETAAERQTSAHAHSIVLDPQDGTVAFVPDLGQDCVHQYLFDAKTGHLEHRGKIPSDETKDGPHGPRYIEFHRELNVAYLINEMSCTVAVFKFDPSAIEKIEAGESFPSLTQIQSISTVPEGFPSMYNTCGRICVDPTGRFVLVSNRGHDSITVFRILNEND-----GRLTRVGWCHTRGRTPRHFAFDDSXXXXXXXXXXXXXXXXFDFNPSNGLLRHTGNDYVVPSPNFICVKTP 458          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CMK3_9STRA2.690e-199100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FMZ7_ECTSI1.190e-5240.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1VHY5_HETAK2.480e-1235.50Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
BLAST of jgi.p|Trimin1|352055 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YJT4_9STRA0.000e+0100.00Lactonase, 7-bladed beta-propeller-domain-containi... [more]
A0A835YI21_9STRA1.270e-25487.95Lactonase, 7-bladed beta-propeller-domain-containi... [more]
A0A0G4I6E3_9ALVE1.120e-18066.23Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
D8LM58_ECTSI1.560e-13754.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
F2U7G7_SALR52.710e-13554.47Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A9VB49_MONBE7.720e-13254.31Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
A0A6B2L6A8_9EUKA1.290e-11750.00Uncharacterized protein n=1 Tax=Arcella intermedia... [more]
A0A7S4RRV9_9DINO4.390e-11747.09Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S3U6W3_9SPIT7.970e-11449.50Hypothetical protein n=2 Tax=Choreotrichia TaxID=1... [more]
A0A7S3YTS1_9EUKA9.130e-11447.59Hypothetical protein n=4 Tax=Lotharella globosa Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_107contigContig_107:264185..265820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352055|estExt_Genemark1.C_Ctg_1070030
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002900.1
TranscriptId352377
TrackFilteredModels1
ProteinId352055
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352055gene_11583Tribonema minus UTEX_B_3156 geneContig_107 264185..265820 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11583_1exon_11583_1Tribonema minus UTEX_B_3156 exonContig_107 264185..264500 +
exon_11583_2exon_11583_2Tribonema minus UTEX_B_3156 exonContig_107 265019..265820 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11583UTR5_11583Tribonema minus UTEX_B_3156 five_prime_UTRContig_107 264185..264282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11583CDS_11583Tribonema minus UTEX_B_3156 CDSContig_107 264283..264500 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11583UTR3_11583Tribonema minus UTEX_B_3156 three_prime_UTRContig_107 265680..265820 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352055Trimin1|352055|estExt_Genemark1.C_Ctg_1070030Tribonema minus UTEX_B_3156 polypeptideContig_107 264283..265679 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11583 ID=mRNA_11583|Name=jgi.p|Trimin1|352055|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1118bp|location=Sequence derived from alignment at Contig_107:264185..265820+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCAGCTTCATTTCAAAGCAGCCTACGCGCCACCTCAGCGCCCACCCAGCA
CCTCAATCACCTGCAACGCCCTCAAGTTGCAATCAAGAGCAGTTGAACAT
GCGACAACGAGCGCTGGTGGCTCTGCTGGTTGCAGGGAGTGCGTGTGCAT
TCCACACTTGCTCGCCAGCCTCAGCATCTGTGCGGCATAAAAATTCGGTC
AGGCGTCGGGTGAGCGAGGAGGTGGAGAGCTTTGATGTGGACTTCGACAT
AGATCGTTTGGACGCCATGAACACTTACATCACGGACGTCAAACAAAAAG
GCTATGTGCCAGCGAGCTCCAACATCGTCTACGACTGCACGCACGGGCAG
TGGCTCCTCATGCAGGTCGCGTACGACAGGAAGATCAAGCTCTTCGCGAG
CCGCAGCGCCGCGGGCGTCGCCGACCTCGCCGCCATCGTCCCCGACGACG
CGCAGGTCCTCTTCACGGGCGCCTTCCTGCCCAAGCACGCCAAGCGCCTC
CTCAAGCTGCGCAACCTGCACTCGGTCGTCGTGCCGGACGCCGCCGCGGC
GCGCGCGCTGAGCGACGCCATGGCTGACGAGCGCGCGCGCCTCGCCGCCA
AGGGCCTCTCCAAGGTCTCCCGCGCGCGCGAGCGCTACCTCACGGCGGGC
GGCGGCGCGCAGCTCGCGCCGCCCGACACGGCCGTCCTGGAGCGCATCCG
CGTGTTCCTGAAGCTGCCGGAGGAGGGGAGCACGACGGCGGCGGCGGTCG
CGGCGACGCTGGCGGAGGTGCGCGAGGGGTGCCCGGGGGTGGAGGTGATG
GGGCTGTGGGGGGAGGGGCGCGGCGCGTACGCGCTGCTGCAGGAGGTCAA
GGCGGCGGTCAACGCGCCCAAGCTCAAGGTCACGCTGCCGTACCGCGGCG
TCGAGGAGTCCTTCAAGTGGAACCAGGGGCTCGGCGAGGGGCGCGGCAGC
ATCATCTGGACATTCGAGTTTGAATAGCGCTTGCTTTTTTTGCACGCCGC
GTGCGCGCTGCGCGTTTGGGGGTTCTGCCTCTGCTCTGGGTGTGCTTCTG
CAGCTGCACCGCACGTGTGCAGCGCTTCTCATGTTCACTGCTGCCTTCAT
TACTGCAGGCCATTTCTG
back to top

protein sequence of jgi.p|Trimin1|352055

>Trimin1|352055|estExt_Genemark1.C_Ctg_1070030 ID=Trimin1|352055|estExt_Genemark1.C_Ctg_1070030|Name=jgi.p|Trimin1|352055|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=293bp
MRQRALVALLVAGSACAFHTCSPASASVRHKNSVRRRVSEEVESFDVDFD
IDRLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFA
SRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAA
ARALSDAMADERARLAAKGLSKVSRARERYLTAGGGAQLAPPDTAVLERI
RVFLKLPEEGSTTAAAVAATLAEVREGCPGVEVMGLWGEGRGAYALLQEV
KAAVNAPKLKVTLPYRGVEESFKWNQGLGEGRGSIIWTFEFE*
back to top

mRNA from alignment at Contig_107:264185..265820+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11583 ID=mRNA_11583|Name=jgi.p|Trimin1|352055|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1636bp|location=Sequence derived from alignment at Contig_107:264185..265820+ (Tribonema minus UTEX_B_3156 )
GCAGCTTCATTTCAAAGCAGCCTACGCGCCACCTCAGCGCCCACCCAGCA CCTCAATCACCTGCAACGCCCTCAAGTTGCAATCAAGAGCAGTTGAACAT GCGACAACGAGCGCTGGTGGCTCTGCTGGTTGCAGGGAGTGCGTGTGCAT TCCACACTTGCTCGCCAGCCTCAGCATCTGTGCGGCATAAAAATTCGGTC AGGCGTCGGGTGAGCGAGGAGGTGGAGAGCTTTGATGTGGACTTCGACAT AGATCGTTTGGACGCCATGAACACTTACATCACGGACGTCAAACAAAAAG GCTATGTGCCAGCGAGGTACGTGGGCATTCCAACCATCCTGTGCAATTCT TAGACGTGATACCGCATATGCACACCGTCATCAGTTACGCACATCTGTTG ACAAGACTTGTGGAGCAGCAGCAGCACCTAGCATGCATCAGTGCAGCATT TCGGCACATCCGTTTGCATCCCCCTACCTTCGCATGGCAAAGCTATGATT GCCCTGCATAATGGTTTTCCAGGCACAAAATGTTTATCAGGGTGATGCAT TGCATCATCACAACAACTGTCTGCGATGATGCTGTCTGAGGTCCGATCAC CCGATCGGCTCCATGAGCCACCACGAGCACGAGTGTCGGCACAGTGCGCT ACTGGTATGCTGTGGCAGTCTAGCCTAGCCCTGCTTCACCACTTATCACT GGACACCCAACAGCGGCCCAAGCCAAACCTCGCCAAGGCCGTCAAACTGA ATGGCGAGACACCCCCCACCCGTTCGTCCCCCCTGCCTGCACCCCTACTC ACCAACCCCCTGTGCCCCCCCGCTCCCCCCCCAGCTCCAACATCGTCTAC GACTGCACGCACGGGCAGTGGCTCCTCATGCAGGTCGCGTACGACAGGAA GATCAAGCTCTTCGCGAGCCGCAGCGCCGCGGGCGTCGCCGACCTCGCCG CCATCGTCCCCGACGACGCGCAGGTCCTCTTCACGGGCGCCTTCCTGCCC AAGCACGCCAAGCGCCTCCTCAAGCTGCGCAACCTGCACTCGGTCGTCGT GCCGGACGCCGCCGCGGCGCGCGCGCTGAGCGACGCCATGGCTGACGAGC GCGCGCGCCTCGCCGCCAAGGGCCTCTCCAAGGTCTCCCGCGCGCGCGAG CGCTACCTCACGGCGGGCGGCGGCGCGCAGCTCGCGCCGCCCGACACGGC CGTCCTGGAGCGCATCCGCGTGTTCCTGAAGCTGCCGGAGGAGGGGAGCA CGACGGCGGCGGCGGTCGCGGCGACGCTGGCGGAGGTGCGCGAGGGGTGC CCGGGGGTGGAGGTGATGGGGCTGTGGGGGGAGGGGCGCGGCGCGTACGC GCTGCTGCAGGAGGTCAAGGCGGCGGTCAACGCGCCCAAGCTCAAGGTCA CGCTGCCGTACCGCGGCGTCGAGGAGTCCTTCAAGTGGAACCAGGGGCTC GGCGAGGGGCGCGGCAGCATCATCTGGACATTCGAGTTTGAATAGCGCTT GCTTTTTTTGCACGCCGCGTGCGCGCTGCGCGTTTGGGGGTTCTGCCTCT GCTCTGGGTGTGCTTCTGCAGCTGCACCGCACGTGTGCAGCGCTTCTCAT GTTCACTGCTGCCTTCATTACTGCAGGCCATTTCTG
back to top

Coding sequence (CDS) from alignment at Contig_107:264185..265820+

>mRNA_11583 ID=mRNA_11583|Name=jgi.p|Trimin1|352055|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=879bp|location=Sequence derived from alignment at Contig_107:264185..265820+ (Tribonema minus UTEX_B_3156 )
ATGCGACAACGAGCGCTGGTGGCTCTGCTGGTTGCAGGGAGTGCGTGTGC
ATTCCACACTTGCTCGCCAGCCTCAGCATCTGTGCGGCATAAAAATTCGG
TCAGGCGTCGGGTGAGCGAGGAGGTGGAGAGCTTTGATGTGGACTTCGAC
ATAGATCGTTTGGACGCCATGAACACTTACATCACGGACGTCAAACAAAA
AGGCTATGTGCCAGCGAGCTCCAACATCGTCTACGACTGCACGCACGGGC
AGTGGCTCCTCATGCAGGTCGCGTACGACAGGAAGATCAAGCTCTTCGCG
AGCCGCAGCGCCGCGGGCGTCGCCGACCTCGCCGCCATCGTCCCCGACGA
CGCGCAGGTCCTCTTCACGGGCGCCTTCCTGCCCAAGCACGCCAAGCGCC
TCCTCAAGCTGCGCAACCTGCACTCGGTCGTCGTGCCGGACGCCGCCGCG
GCGCGCGCGCTGAGCGACGCCATGGCTGACGAGCGCGCGCGCCTCGCCGC
CAAGGGCCTCTCCAAGGTCTCCCGCGCGCGCGAGCGCTACCTCACGGCGG
GCGGCGGCGCGCAGCTCGCGCCGCCCGACACGGCCGTCCTGGAGCGCATC
CGCGTGTTCCTGAAGCTGCCGGAGGAGGGGAGCACGACGGCGGCGGCGGT
CGCGGCGACGCTGGCGGAGGTGCGCGAGGGGTGCCCGGGGGTGGAGGTGA
TGGGGCTGTGGGGGGAGGGGCGCGGCGCGTACGCGCTGCTGCAGGAGGTC
AAGGCGGCGGTCAACGCGCCCAAGCTCAAGGTCACGCTGCCGTACCGCGG
CGTCGAGGAGTCCTTCAAGTGGAACCAGGGGCTCGGCGAGGGGCGCGGCA
GCATCATCTGGACATTCGAGTTTGAATAG
back to top