mRNA_11501 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|180785
Unique NamemRNA_11501
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|180785 vs. uniprot
Match: A0A836CFX3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFX3_9STRA)

HSP 1 Score: 552 bits (1422), Expect = 5.080e-194
Identity = 415/415 (100.00%), Postives = 415/415 (100.00%), Query Frame = 1 
Query:    1 MPETPPASIRRIFTRFKVIAARVHITGPDDYYGDKDDCDNAGDHFGRAFAALQTTDRWDNVEDLTLFIHCAKNVPTRLPARLRRLTVVDIALDTRRRELCGVADNEERGAHGITPSADGGIDEGAGYINVFQDYDFINWILPQLPRSLEDLCLSRSGIRSLTGPLPQNLRTLALGPKFTGPLEDLXXXXXXXXXXXXXXXXXXXXXAGLTHFTAFETREYCWFEQPLGALPAAMRVLDIAASTYXXXXXXXXXXXXXXLRVGQRFXXXXXXXXXXXXXXVFAHRALXXXXXXXXXXXXXEXEFHQYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMSGDSYYLNNVVHGLPPSVVKFIGNRGMKCPPSFDRSGDAITEPARR 1245
            MPETPPASIRRIFTRFKVIAARVHITGPDDYYGDKDDCDNAGDHFGRAFAALQTTDRWDNVEDLTLFIHCAKNVPTRLPARLRRLTVVDIALDTRRRELCGVADNEERGAHGITPSADGGIDEGAGYINVFQDYDFINWILPQLPRSLEDLCLSRSGIRSLTGPLPQNLRTLALGPKFTGPLEDLXXXXXXXXXXXXXXXXXXXXXAGLTHFTAFETREYCWFEQPLGALPAAMRVLDIAASTYXXXXXXXXXXXXXXLRVGQRFXXXXXXXXXXXXXXVFAHRALXXXXXXXXXXXXXEXEFHQYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMSGDSYYLNNVVHGLPPSVVKFIGNRGMKCPPSFDRSGDAITEPARR
Sbjct:    1 MPETPPASIRRIFTRFKVIAARVHITGPDDYYGDKDDCDNAGDHFGRAFAALQTTDRWDNVEDLTLFIHCAKNVPTRLPARLRRLTVVDIALDTRRRELCGVADNEERGAHGITPSADGGIDEGAGYINVFQDYDFINWILPQLPRSLEDLCLSRSGIRSLTGPLPQNLRTLALGPKFTGPLEDLXXXXXXXXXXXXXXXXXXXXXAGLTHFTAFETREYCWFEQPLGALPAAMRVLDIAASTYXXXXXXXXXXXXXXLRVGQRFXXXXXXXXXXXXXXVFAHRALXXXXXXXXXXXXXEXEFHQYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTMSGDSYYLNNVVHGLPPSVVKFIGNRGMKCPPSFDRSGDAITEPARR 415
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BLAST of jgi.p|Trimin1|180785 vs. uniprot
Match: A0A835Z0U9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0U9_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 2.760e-7
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:  625 LTHFTAFETREYCWFEQPLGALPAAMRVLDIAASTYXXXXXXXXXXXXXXLRVGQRF 795
            LTH T F+T +YC FEQPLGALPA +RVLDIA+S YXXXXXXXXXXXX  LRVGQ F
Sbjct:  270 LTHLTFFKTEDYCHFEQPLGALPAGLRVLDIASSMYXXXXXXXXXXXXKVLRVGQCF 326
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|180785 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CFX3_9STRA5.080e-194100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0U9_9STRA2.760e-777.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_228contigContig_228:67784..69031 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|180785|e_gw1.228.36.1
Hectar predicted targeting categoryother localisation
TranscriptId181107
TrackFilteredModels1
ProteinId180785
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180785gene_11501Tribonema minus UTEX_B_3156 geneContig_228 67784..69031 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11501_1exon_11501_1Tribonema minus UTEX_B_3156 exonContig_228 67784..69031 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11501CDS_11501Tribonema minus UTEX_B_3156 CDSContig_228 67784..69031 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|180785Trimin1|180785|e_gw1.228.36.1Tribonema minus UTEX_B_3156 polypeptideContig_228 67784..69031 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11501 ID=mRNA_11501|Name=jgi.p|Trimin1|180785|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1248bp|location=Sequence derived from alignment at Contig_228:67784..69031- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGAAACGCCACCAGCTTCAATTCGGCGCATCTTCACGAGATTTAA
AGTCATCGCGGCGCGAGTGCACATCACGGGACCAGATGACTACTACGGGG
ACAAAGACGATTGCGACAATGCTGGAGACCACTTCGGCAGGGCCTTCGCG
GCTCTACAGACGACCGATCGTTGGGACAACGTGGAGGATTTGACGCTTTT
CATCCACTGCGCGAAGAACGTGCCCACGAGGCTGCCAGCGCGGCTCCGGA
GATTGACCGTCGTCGACATCGCGTTAGACACACGCCGGAGGGAGCTCTGT
GGCGTCGCCGACAATGAAGAGAGAGGCGCACACGGCATCACGCCATCGGC
CGACGGCGGCATCGACGAGGGAGCCGGCTACATCAACGTGTTCCAGGACT
ATGACTTCATCAACTGGATCCTGCCGCAGCTGCCACGGTCTCTTGAAGAC
CTGTGCCTCAGCAGATCCGGCATTCGCAGCCTGACGGGTCCTCTTCCCCA
AAATCTGCGAACCCTCGCTCTCGGTCCGAAGTTCACGGGACCGCTCGAGG
ATCTGCCTGCCACGCTGCGCAAGATGTGCATCGGCGGCCACTTCAACACT
GCCATCCACGTACTCCCGGCGGGGCTGACTCACTTCACGGCCTTCGAGAC
GCGTGAGTATTGCTGGTTCGAGCAGCCGCTGGGCGCTCTTCCCGCGGCGA
TGAGAGTTCTCGACATTGCCGCTTCGACGTACTTCAACTCCCCCCTCGGG
GAACTGCCGCCGACTTTGCAGGTGCTTCGCGTGGGGCAGCGATTCGATCA
GCCACTGGGCGCACTGCCGAATGGGCTTGAGGTGCTCGTGTTTGCGCATC
GAGCTTTGTTCAACCAGCCCCTGGGGCCCCTGCCCCACTCACTGCAAGAG
CTGGAGTTCCATCAGTATGCTCGATTCGACCAGCCCCTAGGACGCCTGCC
ACACTCACTGCGCGTGCTTGAGTTCCATATCCATGCGGTATTCAACCAGC
CGTTGGATGTACTACCGGAGTCGCTGCGTGTCCTCAAATTCATGGGATAC
ACACGATTCAGTCAACAGCTGCCGAGGCTCCCGGATTGCCTGAGGGAGTT
GACCATGAGCGGCGACAGTTACTATCTGAATAACGTGGTGCACGGGTTGC
CGCCTAGCGTGGTCAAGTTCATCGGGAACCGGGGTATGAAGTGTCCGCCT
TCGTTTGATCGCAGTGGCGACGCCATCACAGAGCCAGCTCGCAGATGA
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protein sequence of jgi.p|Trimin1|180785

>Trimin1|180785|e_gw1.228.36.1 ID=Trimin1|180785|e_gw1.228.36.1|Name=jgi.p|Trimin1|180785|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=416bp
MPETPPASIRRIFTRFKVIAARVHITGPDDYYGDKDDCDNAGDHFGRAFA
ALQTTDRWDNVEDLTLFIHCAKNVPTRLPARLRRLTVVDIALDTRRRELC
GVADNEERGAHGITPSADGGIDEGAGYINVFQDYDFINWILPQLPRSLED
LCLSRSGIRSLTGPLPQNLRTLALGPKFTGPLEDLPATLRKMCIGGHFNT
AIHVLPAGLTHFTAFETREYCWFEQPLGALPAAMRVLDIAASTYFNSPLG
ELPPTLQVLRVGQRFDQPLGALPNGLEVLVFAHRALFNQPLGPLPHSLQE
LEFHQYARFDQPLGRLPHSLRVLEFHIHAVFNQPLDVLPESLRVLKFMGY
TRFSQQLPRLPDCLRELTMSGDSYYLNNVVHGLPPSVVKFIGNRGMKCPP
SFDRSGDAITEPARR*
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mRNA from alignment at Contig_228:67784..69031-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11501 ID=mRNA_11501|Name=jgi.p|Trimin1|180785|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1248bp|location=Sequence derived from alignment at Contig_228:67784..69031- (Tribonema minus UTEX_B_3156 )
ATGCCGGAAACGCCACCAGCTTCAATTCGGCGCATCTTCACGAGATTTAA
AGTCATCGCGGCGCGAGTGCACATCACGGGACCAGATGACTACTACGGGG
ACAAAGACGATTGCGACAATGCTGGAGACCACTTCGGCAGGGCCTTCGCG
GCTCTACAGACGACCGATCGTTGGGACAACGTGGAGGATTTGACGCTTTT
CATCCACTGCGCGAAGAACGTGCCCACGAGGCTGCCAGCGCGGCTCCGGA
GATTGACCGTCGTCGACATCGCGTTAGACACACGCCGGAGGGAGCTCTGT
GGCGTCGCCGACAATGAAGAGAGAGGCGCACACGGCATCACGCCATCGGC
CGACGGCGGCATCGACGAGGGAGCCGGCTACATCAACGTGTTCCAGGACT
ATGACTTCATCAACTGGATCCTGCCGCAGCTGCCACGGTCTCTTGAAGAC
CTGTGCCTCAGCAGATCCGGCATTCGCAGCCTGACGGGTCCTCTTCCCCA
AAATCTGCGAACCCTCGCTCTCGGTCCGAAGTTCACGGGACCGCTCGAGG
ATCTGCCTGCCACGCTGCGCAAGATGTGCATCGGCGGCCACTTCAACACT
GCCATCCACGTACTCCCGGCGGGGCTGACTCACTTCACGGCCTTCGAGAC
GCGTGAGTATTGCTGGTTCGAGCAGCCGCTGGGCGCTCTTCCCGCGGCGA
TGAGAGTTCTCGACATTGCCGCTTCGACGTACTTCAACTCCCCCCTCGGG
GAACTGCCGCCGACTTTGCAGGTGCTTCGCGTGGGGCAGCGATTCGATCA
GCCACTGGGCGCACTGCCGAATGGGCTTGAGGTGCTCGTGTTTGCGCATC
GAGCTTTGTTCAACCAGCCCCTGGGGCCCCTGCCCCACTCACTGCAAGAG
CTGGAGTTCCATCAGTATGCTCGATTCGACCAGCCCCTAGGACGCCTGCC
ACACTCACTGCGCGTGCTTGAGTTCCATATCCATGCGGTATTCAACCAGC
CGTTGGATGTACTACCGGAGTCGCTGCGTGTCCTCAAATTCATGGGATAC
ACACGATTCAGTCAACAGCTGCCGAGGCTCCCGGATTGCCTGAGGGAGTT
GACCATGAGCGGCGACAGTTACTATCTGAATAACGTGGTGCACGGGTTGC
CGCCTAGCGTGGTCAAGTTCATCGGGAACCGGGGTATGAAGTGTCCGCCT
TCGTTTGATCGCAGTGGCGACGCCATCACAGAGCCAGCTCGCAGATGA
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Coding sequence (CDS) from alignment at Contig_228:67784..69031-

>mRNA_11501 ID=mRNA_11501|Name=jgi.p|Trimin1|180785|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1248bp|location=Sequence derived from alignment at Contig_228:67784..69031- (Tribonema minus UTEX_B_3156 )
ATGCCGGAAACGCCACCAGCTTCAATTCGGCGCATCTTCACGAGATTTAA
AGTCATCGCGGCGCGAGTGCACATCACGGGACCAGATGACTACTACGGGG
ACAAAGACGATTGCGACAATGCTGGAGACCACTTCGGCAGGGCCTTCGCG
GCTCTACAGACGACCGATCGTTGGGACAACGTGGAGGATTTGACGCTTTT
CATCCACTGCGCGAAGAACGTGCCCACGAGGCTGCCAGCGCGGCTCCGGA
GATTGACCGTCGTCGACATCGCGTTAGACACACGCCGGAGGGAGCTCTGT
GGCGTCGCCGACAATGAAGAGAGAGGCGCACACGGCATCACGCCATCGGC
CGACGGCGGCATCGACGAGGGAGCCGGCTACATCAACGTGTTCCAGGACT
ATGACTTCATCAACTGGATCCTGCCGCAGCTGCCACGGTCTCTTGAAGAC
CTGTGCCTCAGCAGATCCGGCATTCGCAGCCTGACGGGTCCTCTTCCCCA
AAATCTGCGAACCCTCGCTCTCGGTCCGAAGTTCACGGGACCGCTCGAGG
ATCTGCCTGCCACGCTGCGCAAGATGTGCATCGGCGGCCACTTCAACACT
GCCATCCACGTACTCCCGGCGGGGCTGACTCACTTCACGGCCTTCGAGAC
GCGTGAGTATTGCTGGTTCGAGCAGCCGCTGGGCGCTCTTCCCGCGGCGA
TGAGAGTTCTCGACATTGCCGCTTCGACGTACTTCAACTCCCCCCTCGGG
GAACTGCCGCCGACTTTGCAGGTGCTTCGCGTGGGGCAGCGATTCGATCA
GCCACTGGGCGCACTGCCGAATGGGCTTGAGGTGCTCGTGTTTGCGCATC
GAGCTTTGTTCAACCAGCCCCTGGGGCCCCTGCCCCACTCACTGCAAGAG
CTGGAGTTCCATCAGTATGCTCGATTCGACCAGCCCCTAGGACGCCTGCC
ACACTCACTGCGCGTGCTTGAGTTCCATATCCATGCGGTATTCAACCAGC
CGTTGGATGTACTACCGGAGTCGCTGCGTGTCCTCAAATTCATGGGATAC
ACACGATTCAGTCAACAGCTGCCGAGGCTCCCGGATTGCCTGAGGGAGTT
GACCATGAGCGGCGACAGTTACTATCTGAATAACGTGGTGCACGGGTTGC
CGCCTAGCGTGGTCAAGTTCATCGGGAACCGGGGTATGAAGTGTCCGCCT
TCGTTTGATCGCAGTGGCGACGCCATCACAGAGCCAGCTCGCAGATGA
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