mRNA_11466 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: A0A836C7H9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7H9_9STRA) HSP 1 Score: 551 bits (1419), Expect = 1.920e-196 Identity = 327/327 (100.00%), Postives = 327/327 (100.00%), Query Frame = 1 Query: 1 MSDPEHSTSVEKTTADRLADVLIQLKPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARRAAPALVACAFRAAGVLAAAALARPVFAAFVAQRGAALAVGAAADLALRARCVAPGHWADAQRVRLAAALGAAGFAVQWWRAFQLAFALRVALLPLSAVEWALTLCFAVLV 981 MSDPEHSTSVEKTTADRLADVLIQLKPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARRAAPALVACAFRAAGVLAAAALARPVFAAFVAQRGAALAVGAAADLALRARCVAPGHWADAQRVRLAAALGAAGFAVQWWRAFQLAFALRVALLPLSAVEWALTLCFAVLV Sbjct: 1 MSDPEHSTSVEKTTADRLADVLIQLKPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARRAAPALVACAFRAAGVLAAAALARPVFAAFVAQRGAALAVGAAADLALRARCVAPGHWADAQRVRLAAALGAAGFAVQWWRAFQLAFALRVALLPLSAVEWALTLCFAVLV 327
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: A0A7S0T5G8_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T5G8_9RHOD) HSP 1 Score: 107 bits (268), Expect = 3.230e-23 Identity = 91/273 (33.33%), Postives = 133/273 (48.72%), Query Frame = 1 Query: 154 SAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARRAAPALVACAFRAAGVLAAAALARPVFAAFVAQRGAALAVGAAADLALRARCVAPGHWADAQRVRLAAALGAAGFAV-----QWW---RAFQLAFALRVALLPLSAVE 948 + W L+PYHP+ L P+++G+ LVF GG F L+ A+EA R+ G + V + AL + AAR A E+DD VDAD+DG+ADV Q D + L R+ ++L++V+ + A+A+ +GT++G H + V + +P + R P ++ FR GV A L R V A F+ +GA L + L V G A + + +AGFAV WW R F L F L + LLPLS E Sbjct: 48 AVWEWLEPYHPDELIPVVVGILLVFFGGTFAVLIQAIEAARLFG-FEKVFTSLKALAQEFSAARKAYERDDMVDADKDGVADVKQMDKKQLAARKLGVILRAVDPQKLATALEGLTQAWIAIIATLRIKFAQAITLGTSIGNTLHRYVTPFVLKFTKPLVPREYARWLPVILQYTFRYIGVSIAFWLVRIVSALFMGMKGAEL-----FTIGLVQYFVRHGQL-SADVFDTGSPILSAGFAVIALFGAWWQISRNFSLPFPLNILLLPLSIAE 313
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: A0A7S0R125_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0R125_9CHLO) HSP 1 Score: 105 bits (261), Expect = 3.020e-22 Identity = 90/296 (30.41%), Postives = 136/296 (45.95%), Query Frame = 1 Query: 76 KPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARRAAPALVACAFRAAGVLAAAALARPVFAAFVAQRGAALAVGAAADLALRARCVAPGHWADAQRVR--LAAALGAAGFAVQWWRAFQLAFALRVALLPLSAVEWAL 957 KP+ + + + A P L + A WA LQPY P+ P+++GL L+F GG +P LV A+EA R+ G W + L YK A A KDD+VD ++DGIADV Q D + L+ R+ A+ +K+ + + A+ + +G +LG + +VV A +ALP + + ++ R+ V A L R + A A RGA L + L L+ + +P + ALG G Q R F L F L L P++ +EW L Sbjct: 29 KPIVEAILKVLDVAGPALEKSIAIASKIWAQLQPYDPQDWLPVIMGLFLIFFGGQWPLLVGAIEAFRICG-WDNTKKSLVLLYDQYKIAMDASRKDDKVDENKDGIADVKQIDTKQLVSRKLAVFMKATDPNAVNTGMQGLAAGFGAVIATLKMRFAQTVTLGVSLGDIFAKTADSVVRPALEKALPKEYHKWVGVMITYGSRSLAVTIAWWLQRIISALHSAMRGAQLLLMGVNKLMLKYKVRSPVDLTPQNPAYPGVTGALGGIGMYTQLVRGFALPFPLSFLLFPVTLLEWVL 323
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: C1MW76_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MW76_MICPC) HSP 1 Score: 97.4 bits (241), Expect = 2.390e-19 Identity = 93/307 (30.29%), Postives = 136/307 (44.30%), Query Frame = 1 Query: 43 ADRLADVLIQLKPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARRAAPALVACAFRAAGVLAAAALARPVFAAFVAQRGAALAVGAAADLALRARCVAPGHWADAQRVRLAA--ALGAAGFAVQWWRAFQLAFALRVALLPLSAVEWAL 957 A + +L + P+F L +P + L+PYHPE P + G LVF GG F TL AVEA R+ G + A L+ +Y A AA +KDD+VDAD DG+ADV Q DARAL R+ A++ K+V+ D A + IG+ +G + H+ A P + ++ P + + G + A L + A A RGA + + A R + P + RV A AL GF Q+W + L F L + LLP++ E+A+ Sbjct: 37 ATLMRPMLEKTTPLFALLSQTIATIEPYVIALVAYFNHLATILKPYHPEEFLPAMCGFVLVFFGGNFFTLCAAVEAYRLIG-FDDTKIALKKLKHSYDVAMAASKKDDEVDADGDGVADVKQIDARALAVRKAAVVAKAVDPDLVTDALVAINGGLMAVVATLRVRFAACVTIGSTVGEMAHNAVQTHAEPALLELTPSEYKKWVPCGLRYGCQLCGFVIAWFLQMSISAFHSATRGAQMFARGSLTYATRRGYLNPTAIDEKGRVFNACVFALAFVGFWSQFWSGYSLPFPLNILLLPVTFAEYAM 342
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: A0A7S0I9E2_MICPS (Hypothetical protein n=3 Tax=Micromonas TaxID=38832 RepID=A0A7S0I9E2_MICPS) HSP 1 Score: 96.3 bits (238), Expect = 9.280e-19 Identity = 90/305 (29.51%), Postives = 134/305 (43.93%), Query Frame = 1 Query: 43 ADRLADVLIQLKPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARRAAPALVACAFRAAGVLAAAALARPVFAAFVAQRGAALAVGAAADLALRARCVAPGHWADAQRVR--LAAALGAAGFAVQWWRAFQLAFALRVALLPLSAVEW 951 A + VL + P F L + P + A AW LQPYHP+ P + G LVF GG F TL AVEA R+ G + A AL +YK A A +KDD VD D DGIADV Q ++ L++R+ ++ K+++ + A+ + IG +G + H+ P + ++ V A + GV A L + A A RGA L + A+R + ++P + +V LG GF Q+W F L F + + LLP++ E+ Sbjct: 74 AGAIKPVLDKAAPAFAVLSQVFAIVFPYIEMAFTYLAVAWEKLQPYHPQEFMPAIAGFCLVFFGGNFFTLAAAVEAYRMVG-FDETKTALIALHKSYKVALDASKKDDDVDDDGDGIADVKQISSKELVQRKIGVVAKAIDPELVADAVTAINAGLMAVVATLKVKFAKCVTIGVTVGGIAHNVVSTNFEPVLLELTPGEYKKWVSPGVKYACKLFGVSIAWWLQMTISAFHSASRGAQLFARGSLAYAVRHKYLSPSAIDEKGKVFNFFIVGLGCLGFWWQFWNGFSLPFPMNILLLPVTFAEY 377
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: R7QPM1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPM1_CHOCR) HSP 1 Score: 87.0 bits (214), Expect = 4.950e-17 Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 1 Query: 7 DPEHSTSVEKTTADRLADVLIQLKPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADV 402 DP S + A LA V + P+F L + +P+L ++ W L+PYHPE L L G LVF GG + TLV + EA + G W + A AL + ARAA E+D++VDA+RDGIADV Sbjct: 29 DPPQPASQTQDRAFNLAQVHDTVSPLFVALATIVGAVEPILDRVSDLVQTVWKALEPYHPEDLFVALYGFLLVFFGGVYMTLVASFEAAHIFG-WANIKMAVRALYYEWGKARAAFERDNKVDANRDGIADV 159
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: A0A7S3JX97_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JX97_9STRA) HSP 1 Score: 87.4 bits (215), Expect = 6.750e-16 Identity = 58/204 (28.43%), Postives = 95/204 (46.57%), Query Frame = 1 Query: 40 TADRLADVLIQLKPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARR 651 T + + +++L P+ + + E + P + + L+PYHPE + + LGL + F GG FP L+TAVEA R G + + A L + + A +KDD++DAD+DGI DV Q +A L+ R+ L LK+ + ARA+ +G A+G + ++ + +PPD R Sbjct: 19 TPESVRAYIVKLAPIIALVGTILEVSVPYMIKIYNGLIKLYKILEPYHPEDMAYVFLGLCMAFFGGIFPALITAVEAYRQVG-FASTLRALKVLYDDCLKVQEASKKDDKIDADKDGIPDVEQVEAHQLVERKVLLFLKTTDPKAVSDALAAITSGWLSVLASLRIKFARAITLGAAIGDVLRKPATRYLSPFLHKVVPPDYER 221
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: A0A7S3UGJ9_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UGJ9_9CHLO) HSP 1 Score: 86.3 bits (212), Expect = 1.360e-15 Identity = 56/175 (32.00%), Postives = 87/175 (49.71%), Query Frame = 1 Query: 52 LADVLIQLKPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALG 576 + + L +L P F L ++ +R PLL +SA A L +H + L +LG ++F GG FPTL++AVEA R+ G W L +Y+ A+AA EKDD++D D+DG DV A+ L R+ + +K+ + D+ AR + +G A+G Sbjct: 1 MEEALARLVPAFQTLGSVLDRLAPLLVWLAEHLQSALAKLGQWHADVLFKCILGACMLFFGGYFPTLISAVEAYRICG-WKTTKQCLLDLYESYRVAKAASEKDDKLDEDKDGQPDVLSLSAKELAARKLKVAMKATDPDKVMYATIGLWAGFSAVAATLRMKFARFITLGGAIG 174
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: A0A7S3R0W0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R0W0_DUNTE) HSP 1 Score: 85.9 bits (211), Expect = 2.650e-15 Identity = 81/305 (26.56%), Postives = 132/305 (43.28%), Query Frame = 1 Query: 49 RLADVLIQLKPVFTHLEALTERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARRAAPALVACAFRAAGVLAAAALARPVFAAFVAQRGAALAVGAAADLALRARCVAPGHWADAQRVRLAA--ALGAAGFAVQWWRAFQLAFALRVALLPLSAVEWAL 957 R+ +++I++ P+ A+ + P + + + E I LGL L+F GG FP L+ A+EA R++G W + + L YK A A +KDD++DA+ DG+ DV Q A+ +++R+ L L + A+ + +G +L ++ + A R LPP+ + L++ A R+ V A R + A A RG + + + R + + AA ALG+ GFA Q F L F L + LLP +EWAL Sbjct: 28 RVEEIIIKITPIIETCAAIADFMGPYVDKGFQFGEKLYHSAERNGAEEYVQIGLGLLLLFFGGNFPVLIAAIEAFRITG-WDSMKTSFRILYKEYKKAMVAHKKDDEMDANNDGVPDVQQIGAQEVVKRKVLLFLTETDPKAVNEGVMGLSSGFMSVLATLRVKFAKTVTLGVSLADCFNETAQKIAGPALMRTLPPEHHKWIDLLISYACRSLAVTIAWWCQRIISALHCAMRGGQMILKGISRALARHNIQLSLDLSPSNPAFPAACTALGSVGFAFQAMHGFSLPFPLNILLLPFRIMEWAL 331
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Match: A0A0M9FY41_9TRYP (Uncharacterized protein n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9FY41_9TRYP) HSP 1 Score: 84.3 bits (207), Expect = 8.970e-15 Identity = 55/181 (30.39%), Postives = 89/181 (49.17%), Query Frame = 1 Query: 109 ERAQPLLTNAELQARSAWAGLQPYHPEALGPILLGLALVFAGGAFPTLVTAVEAVRVSGTWPGVVDACGALRANYKAARAAQEKDDQVDADRDGIADVAQADARALLRRRGALLLKSVNADQXXXXXXXXXXXXXXXXXXXXXXXARALAIGTALGRLTHDWCGAVVTEAAARALPPDARR 651 ++A P L + A +A + Y E P+L+GLAL F GGA+ L+ VE VR+ W + ++ L+ NY+ A KD+ +DAD +G+ADV + D L R+ AL LKSV+ + AR+LA+G +L + ++ + + + LPPD ++ Sbjct: 46 DKAAPYLAQVPVYAAAAKEQAKKYRLEEFVPMLIGLALCFFGGAYTMLIAVVETVRLV-CWEDLQNSFAVLKRNYEIAAEQNRKDNAIDADGNGVADVQEMDRNELFTRKAALFLKSVDIESVQTAARTIASAFLSVMATLRVKFARSLALGGSLTNMAKEYIH--LEQWLSEVLPPDTKK 223 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|338307 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11466 ID=mRNA_11466|Name=jgi.p|Trimin1|338307|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=984bp|location=Sequence derived from alignment at Contig_90:548795..550698- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCGGACCCTGAGCACTCCACGTCCGTCGAGAAAACGACGGCGGATCGback to top protein sequence of jgi.p|Trimin1|338307 >Trimin1|338307|MIX47070_1_15 ID=Trimin1|338307|MIX47070_1_15|Name=jgi.p|Trimin1|338307|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=328bp MSDPEHSTSVEKTTADRLADVLIQLKPVFTHLEALTERAQPLLTNAELQAback to top mRNA from alignment at Contig_90:548795..550698- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11466 ID=mRNA_11466|Name=jgi.p|Trimin1|338307|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1904bp|location=Sequence derived from alignment at Contig_90:548795..550698- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_90:548795..550698- >mRNA_11466 ID=mRNA_11466|Name=jgi.p|Trimin1|338307|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=984bp|location=Sequence derived from alignment at Contig_90:548795..550698- (Tribonema minus UTEX_B_3156 )back to top |